Wall clock time and date at job start Tue Mar 31 2020 07:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00175 * 2 1 4 4 H 1.48501 * 109.47215 * 240.00395 * 3 2 1 5 5 H 1.48501 * 109.47029 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47193 * 119.99936 * 3 2 1 7 7 C 1.37877 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99927 * 180.08230 * 7 2 1 9 9 C 1.50701 * 120.00353 * 0.07495 * 7 2 1 10 10 C 1.53004 * 115.54891 * 324.81398 * 9 7 2 11 11 N 1.46504 * 109.47033 * 305.85243 * 10 9 7 12 12 C 1.34770 * 119.99932 * 184.61050 * 11 10 9 13 13 O 1.21589 * 120.00238 * 5.72575 * 12 11 10 14 14 N 1.34781 * 120.00071 * 185.72962 * 12 11 10 15 15 C 1.47853 * 122.22794 * 353.99587 * 14 12 11 16 16 C 1.52718 * 111.06228 * 127.26278 * 15 14 12 17 17 C 1.53870 * 111.52945 * 48.52346 * 16 15 14 18 18 C 1.51098 * 107.33316 * 303.05864 * 17 16 15 19 19 H 1.08999 * 108.78644 * 309.05624 * 18 17 16 20 20 N 1.45468 * 119.10209 * 183.74537 * 18 17 16 21 21 C 1.48792 * 106.76674 * 208.99208 * 20 18 17 22 22 C 1.55469 * 106.93720 * 5.42188 * 21 20 18 23 23 C 1.45707 * 122.23133 * 173.69721 * 14 12 11 24 24 H 1.09005 * 111.02653 * 119.81811 * 23 14 12 25 25 C 1.52992 * 117.49786 * 110.47835 * 9 7 2 26 26 C 1.53003 * 117.50085 * 179.13972 * 9 7 2 27 27 H 0.96992 * 120.00338 * 5.00930 * 1 2 3 28 28 H 1.08996 * 109.47302 * 185.85107 * 10 9 7 29 29 H 1.09002 * 109.46983 * 65.85049 * 10 9 7 30 30 H 0.97005 * 119.99704 * 4.60572 * 11 10 9 31 31 H 1.09004 * 109.16093 * 247.66962 * 15 14 12 32 32 H 1.08999 * 109.16353 * 6.85150 * 15 14 12 33 33 H 1.08994 * 109.07199 * 169.05550 * 16 15 14 34 34 H 1.09005 * 109.06336 * 288.06634 * 16 15 14 35 35 H 1.08998 * 109.88493 * 62.51551 * 17 16 15 36 36 H 1.08997 * 109.88299 * 183.52945 * 17 16 15 37 37 H 1.00903 * 111.00447 * 330.09274 * 20 18 17 38 38 H 1.08999 * 109.97247 * 124.79456 * 21 20 18 39 39 H 1.09001 * 109.96683 * 246.02019 * 21 20 18 40 40 H 1.08998 * 110.97657 * 140.80971 * 22 21 20 41 41 H 1.08996 * 110.97617 * 264.55097 * 22 21 20 42 42 H 1.09007 * 117.50153 * 215.00336 * 25 9 7 43 43 H 1.08997 * 117.50252 * 0.02970 * 25 9 7 44 44 H 1.08997 * 117.49988 * 359.97438 * 26 9 7 45 45 H 1.08994 * 117.49520 * 144.97513 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 0.0008 9 6 1.2510 -2.4992 -0.0028 10 6 -0.0569 -2.5075 0.7911 11 7 0.2011 -2.0592 2.1618 12 6 -0.7911 -2.0743 3.0737 13 8 -1.8708 -2.5560 2.7896 14 7 -0.5868 -1.5553 4.3007 15 6 0.7401 -1.0758 4.7430 16 6 0.6577 0.3531 5.2756 17 6 -0.4957 0.5154 6.2810 18 6 -1.7669 0.0982 5.5788 19 1 -1.8327 0.6273 4.6281 20 7 -3.0366 0.2304 6.2764 21 6 -3.9344 -0.8268 5.7378 22 6 -3.0820 -1.6949 4.7698 23 6 -1.6600 -1.4234 5.2773 24 1 -1.4390 -1.9924 6.1805 25 6 1.3105 -3.3469 -1.2750 26 6 2.0730 -3.7895 -0.0237 27 1 -0.4850 0.8367 -0.0733 28 1 -0.4640 -3.5184 0.8100 29 1 -0.7734 -1.8360 0.3180 30 1 1.0861 -1.7517 2.4130 31 1 1.1126 -1.7304 5.5310 32 1 1.4301 -1.1041 3.8997 33 1 1.5972 0.6044 5.7678 34 1 0.4997 1.0358 4.4406 35 1 -0.3245 -0.1227 7.1479 36 1 -0.5693 1.5563 6.5959 37 1 -2.9143 0.1278 7.2727 38 1 -4.3152 -1.4425 6.5526 39 1 -4.7638 -0.3708 5.1971 40 1 -3.3359 -2.7505 4.8663 41 1 -3.1996 -1.3600 3.7393 42 1 0.4179 -3.9107 -1.5464 43 1 1.8949 -2.9610 -2.1102 44 1 3.1588 -3.6944 -0.0362 45 1 1.6823 -4.6441 0.5285 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891870769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:30 Heat of formation + Delta-G solvation = 13.479459 kcal Electronic energy + Delta-G solvation = -25380.592566 eV Core-core repulsion = 22013.002391 eV Total energy + Delta-G solvation = -3367.590175 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.49645 -38.24747 -36.63521 -35.55026 -32.95888 -32.61622 -32.16819 -29.06033 -28.84780 -26.08324 -25.41069 -24.19096 -21.99033 -21.41321 -21.18829 -20.52270 -19.24756 -18.92485 -17.17127 -16.25077 -15.90106 -15.72701 -15.28946 -14.78389 -14.56931 -14.19895 -14.03282 -13.70627 -13.46064 -13.35114 -12.97905 -12.70313 -12.48354 -11.97640 -11.89790 -11.71522 -11.39196 -11.21143 -11.09754 -11.04259 -10.80471 -10.76329 -10.66489 -10.51967 -10.44814 -10.25928 -9.62987 -9.09389 -8.92576 -8.85438 -8.72265 -8.28672 -8.08256 -7.60669 -6.00763 -4.20564 3.18886 3.22697 3.28369 3.28779 3.98488 4.12378 4.27396 4.61948 4.82590 4.85690 4.95688 4.98445 5.14078 5.20371 5.28254 5.39715 5.42166 5.48708 5.54850 5.66832 5.79212 5.89853 5.94615 6.04433 6.07743 6.14818 6.26759 6.32635 6.41367 6.56068 6.57501 6.63505 6.75256 6.76652 6.89292 7.00326 7.15203 7.27075 7.40229 7.57016 7.68791 7.79360 7.98674 8.31924 8.75225 8.95858 9.42249 9.50412 10.88645 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016468 B = 0.005790 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.896510 B = 4834.818952 C = 5640.770322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.075 3.925 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.498 4.498 8 H 0.059 0.941 9 C 0.037 3.963 10 C 0.182 3.818 11 N -0.701 5.701 12 C 0.708 3.292 13 O -0.602 6.602 14 N -0.628 5.628 15 C 0.114 3.886 16 C -0.131 4.131 17 C -0.108 4.108 18 C 0.052 3.948 19 H 0.085 0.915 20 N -0.665 5.665 21 C 0.039 3.961 22 C -0.125 4.125 23 C 0.129 3.871 24 H 0.068 0.932 25 C -0.197 4.197 26 C -0.212 4.212 27 H 0.263 0.737 28 H 0.020 0.980 29 H 0.109 0.891 30 H 0.394 0.606 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.330 0.670 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.899 -0.171 12.974 13.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.129 4.129 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.535 4.535 8 H 0.078 0.922 9 C 0.036 3.964 10 C 0.059 3.941 11 N -0.353 5.353 12 C 0.410 3.590 13 O -0.483 6.483 14 N -0.367 5.367 15 C -0.009 4.009 16 C -0.171 4.171 17 C -0.146 4.146 18 C -0.060 4.060 19 H 0.103 0.897 20 N -0.292 5.292 21 C -0.090 4.090 22 C -0.163 4.163 23 C 0.022 3.978 24 H 0.086 0.914 25 C -0.236 4.236 26 C -0.249 4.249 27 H 0.073 0.927 28 H 0.038 0.962 29 H 0.127 0.873 30 H 0.230 0.770 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.145 0.855 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.119 0.881 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.129 0.171 12.330 12.514 hybrid contribution 1.454 0.191 0.360 1.510 sum -0.675 0.362 12.691 12.714 Atomic orbital electron populations 1.69855 1.05644 1.26803 1.47725 1.24984 0.94823 0.98924 0.94186 0.86678 0.79589 0.83133 0.78757 1.20249 1.21216 1.20128 1.20458 0.92347 0.88567 1.52139 0.92246 1.19239 0.93382 0.89555 0.94239 1.20923 0.97789 0.96258 0.79133 1.45019 1.11735 1.68003 1.10565 1.15816 0.84665 0.79060 0.79487 1.90803 1.25240 1.52982 1.79229 1.46987 1.09352 1.66821 1.13520 1.21544 0.84932 0.94456 0.99980 1.21888 0.98441 0.97362 0.99366 1.21339 0.93609 1.01780 0.97854 1.22377 0.88754 0.95718 0.99134 0.89658 1.62092 1.10632 1.48100 1.08362 1.23254 0.96608 0.91509 0.97654 1.22806 0.91970 1.00190 1.01368 1.22244 0.88478 0.96282 0.90827 0.91440 1.22927 1.01108 1.06653 0.92907 1.22943 0.97819 1.00740 1.03443 0.92664 0.96211 0.87342 0.77030 0.92231 0.89693 0.90514 0.91012 0.91967 0.91114 0.85467 0.92751 0.90447 0.90784 0.88108 0.91476 0.90251 0.90731 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.74 10.29 55.43 0.57 -22.17 16 2 C 0.08 1.90 5.27 -17.82 -0.09 1.80 16 3 Si 0.89 19.75 29.54 -169.99 -5.02 14.73 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.50 -12.45 8.30 -34.44 -0.29 -12.73 16 8 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.04 0.86 2.05 -155.66 -0.32 0.54 16 10 C 0.18 4.37 4.64 -4.04 -0.02 4.35 16 11 N -0.70 -15.29 5.13 -65.22 -0.33 -15.63 16 12 C 0.71 15.11 8.24 -86.92 -0.72 14.40 16 13 O -0.60 -14.45 13.34 5.29 0.07 -14.38 16 14 N -0.63 -10.73 2.91 -169.69 -0.49 -11.23 16 15 C 0.11 1.60 6.40 -3.44 -0.02 1.57 16 16 C -0.13 -1.60 5.92 -26.42 -0.16 -1.76 16 17 C -0.11 -1.21 5.86 -27.24 -0.16 -1.37 16 18 C 0.05 0.71 2.72 -68.12 -0.18 0.53 16 19 H 0.09 1.48 8.04 -51.93 -0.42 1.06 16 20 N -0.66 -8.28 7.42 -104.46 -0.78 -9.05 16 21 C 0.04 0.49 7.63 -1.46 -0.01 0.48 16 22 C -0.12 -1.97 4.92 -25.21 -0.12 -2.10 16 23 C 0.13 1.93 3.31 -66.82 -0.22 1.71 16 24 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 25 C -0.20 -4.33 9.96 -26.70 -0.27 -4.60 16 26 C -0.21 -4.44 9.92 -26.69 -0.26 -4.71 16 27 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 28 H 0.02 0.48 8.05 -51.93 -0.42 0.06 16 29 H 0.11 2.95 5.92 -51.93 -0.31 2.64 16 30 H 0.39 8.24 5.54 -40.82 -0.23 8.02 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.27 5.74 -51.93 -0.30 0.98 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.60 8.11 -51.93 -0.42 0.18 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.33 3.35 8.79 -39.29 -0.35 3.01 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.10 1.99 6.40 -51.93 -0.33 1.65 16 42 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 44 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 45 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 345.53 15.07 5.21 5.21 Total: -1.00 -27.83 345.53 -11.01 -38.83 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -7.38 Total: 15.57 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -2.84 Total: -1.88 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -1.03 Total: -58.08 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: 0.07 Total: -14.38 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.83 -11.01 -38.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891870769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.312 kcal (2) G-P(sol) polarization free energy of solvation -27.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds