Wall clock time and date at job start Tue Mar 31 2020 07:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00175 * 2 1 4 4 H 1.48501 * 109.47215 * 240.00395 * 3 2 1 5 5 H 1.48501 * 109.47029 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47193 * 119.99936 * 3 2 1 7 7 C 1.37877 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99927 * 180.08230 * 7 2 1 9 9 C 1.50701 * 120.00353 * 0.07495 * 7 2 1 10 10 C 1.53004 * 115.54891 * 324.81398 * 9 7 2 11 11 N 1.46504 * 109.47033 * 305.85243 * 10 9 7 12 12 C 1.34770 * 119.99932 * 184.61050 * 11 10 9 13 13 O 1.21589 * 120.00238 * 5.72575 * 12 11 10 14 14 N 1.34781 * 120.00071 * 185.72962 * 12 11 10 15 15 C 1.47853 * 122.22794 * 353.99587 * 14 12 11 16 16 C 1.52718 * 111.06228 * 127.26278 * 15 14 12 17 17 C 1.53870 * 111.52945 * 48.52346 * 16 15 14 18 18 C 1.51098 * 107.33316 * 303.05864 * 17 16 15 19 19 H 1.08999 * 108.78644 * 309.05624 * 18 17 16 20 20 N 1.45468 * 119.10209 * 183.74537 * 18 17 16 21 21 C 1.48792 * 106.76674 * 208.99208 * 20 18 17 22 22 C 1.55469 * 106.93720 * 5.42188 * 21 20 18 23 23 C 1.45707 * 122.23133 * 173.69721 * 14 12 11 24 24 H 1.09005 * 111.02653 * 119.81811 * 23 14 12 25 25 C 1.52992 * 117.49786 * 110.47835 * 9 7 2 26 26 C 1.53003 * 117.50085 * 179.13972 * 9 7 2 27 27 H 0.96992 * 120.00338 * 5.00930 * 1 2 3 28 28 H 1.08996 * 109.47302 * 185.85107 * 10 9 7 29 29 H 1.09002 * 109.46983 * 65.85049 * 10 9 7 30 30 H 0.97005 * 119.99704 * 4.60572 * 11 10 9 31 31 H 1.09004 * 109.16093 * 247.66962 * 15 14 12 32 32 H 1.08999 * 109.16353 * 6.85150 * 15 14 12 33 33 H 1.08994 * 109.07199 * 169.05550 * 16 15 14 34 34 H 1.09005 * 109.06336 * 288.06634 * 16 15 14 35 35 H 1.08998 * 109.88493 * 62.51551 * 17 16 15 36 36 H 1.08997 * 109.88299 * 183.52945 * 17 16 15 37 37 H 1.00903 * 111.00447 * 330.09274 * 20 18 17 38 38 H 1.08999 * 109.97247 * 124.79456 * 21 20 18 39 39 H 1.09001 * 109.96683 * 246.02019 * 21 20 18 40 40 H 1.08998 * 110.97657 * 140.80971 * 22 21 20 41 41 H 1.08996 * 110.97617 * 264.55097 * 22 21 20 42 42 H 1.09007 * 117.50153 * 215.00336 * 25 9 7 43 43 H 1.08997 * 117.50252 * 0.02970 * 25 9 7 44 44 H 1.08997 * 117.49988 * 359.97438 * 26 9 7 45 45 H 1.08994 * 117.49520 * 144.97513 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 0.0008 9 6 1.2510 -2.4992 -0.0028 10 6 -0.0569 -2.5075 0.7911 11 7 0.2011 -2.0592 2.1618 12 6 -0.7911 -2.0743 3.0737 13 8 -1.8708 -2.5560 2.7896 14 7 -0.5868 -1.5553 4.3007 15 6 0.7401 -1.0758 4.7430 16 6 0.6577 0.3531 5.2756 17 6 -0.4957 0.5154 6.2810 18 6 -1.7669 0.0982 5.5788 19 1 -1.8327 0.6273 4.6281 20 7 -3.0366 0.2304 6.2764 21 6 -3.9344 -0.8268 5.7378 22 6 -3.0820 -1.6949 4.7698 23 6 -1.6600 -1.4234 5.2773 24 1 -1.4390 -1.9924 6.1805 25 6 1.3105 -3.3469 -1.2750 26 6 2.0730 -3.7895 -0.0237 27 1 -0.4850 0.8367 -0.0733 28 1 -0.4640 -3.5184 0.8100 29 1 -0.7734 -1.8360 0.3180 30 1 1.0861 -1.7517 2.4130 31 1 1.1126 -1.7304 5.5310 32 1 1.4301 -1.1041 3.8997 33 1 1.5972 0.6044 5.7678 34 1 0.4997 1.0358 4.4406 35 1 -0.3245 -0.1227 7.1479 36 1 -0.5693 1.5563 6.5959 37 1 -2.9143 0.1278 7.2727 38 1 -4.3152 -1.4425 6.5526 39 1 -4.7638 -0.3708 5.1971 40 1 -3.3359 -2.7505 4.8663 41 1 -3.1996 -1.3600 3.7393 42 1 0.4179 -3.9107 -1.5464 43 1 1.8949 -2.9610 -2.1102 44 1 3.1588 -3.6944 -0.0362 45 1 1.6823 -4.6441 0.5285 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891870769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:29 Heat of formation + Delta-G solvation = -4.623055 kcal Electronic energy + Delta-G solvation = -25381.377550 eV Core-core repulsion = 22013.002391 eV Total energy + Delta-G solvation = -3368.375159 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.81529 -39.76547 -38.38550 -36.78134 -34.68099 -34.10082 -33.82951 -30.28549 -29.96687 -27.85149 -27.19890 -25.53214 -23.07991 -22.98856 -22.63583 -21.65113 -21.08484 -20.49469 -18.77044 -17.87208 -17.24255 -16.99393 -16.80276 -16.52436 -15.88380 -15.59813 -15.44198 -15.17662 -14.94548 -14.61410 -14.37937 -14.22250 -13.87752 -13.62250 -13.27859 -13.01711 -12.97214 -12.89521 -12.63104 -12.40862 -12.31062 -12.08052 -12.04275 -11.89692 -11.80686 -11.57264 -11.44805 -10.93627 -10.71471 -10.59397 -10.15466 -9.93327 -9.60223 -9.09195 -7.93780 -6.19548 1.42238 1.45627 1.52020 1.80636 2.37798 2.42140 2.92649 3.06179 3.32502 3.64817 3.71684 3.77681 3.90416 3.99046 4.09535 4.20886 4.26747 4.27460 4.34950 4.50373 4.54481 4.66054 4.72133 4.78241 4.81890 4.88794 4.91490 4.95307 5.03523 5.10238 5.12438 5.17501 5.24571 5.29700 5.36893 5.52396 5.59794 5.62912 5.84419 5.96944 5.98856 6.17990 6.38719 6.54364 6.81730 7.29184 7.45440 7.83734 8.92542 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016468 B = 0.005790 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.896510 B = 4834.818952 C = 5640.770322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.037 3.963 3 Si 0.946 3.054 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.261 1.261 7 C -0.503 4.503 8 H 0.060 0.940 9 C 0.008 3.992 10 C 0.197 3.803 11 N -0.700 5.700 12 C 0.699 3.301 13 O -0.638 6.638 14 N -0.626 5.626 15 C 0.108 3.892 16 C -0.127 4.127 17 C -0.099 4.099 18 C 0.065 3.935 19 H 0.038 0.962 20 N -0.666 5.666 21 C 0.049 3.951 22 C -0.126 4.126 23 C 0.121 3.879 24 H 0.098 0.902 25 C -0.198 4.198 26 C -0.186 4.186 27 H 0.255 0.745 28 H 0.010 0.990 29 H 0.071 0.929 30 H 0.398 0.602 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.110 0.890 34 H 0.041 0.959 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.351 0.649 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.051 0.949 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.704 -0.001 15.838 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.165 4.165 3 Si 0.772 3.228 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.186 1.186 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.007 3.993 10 C 0.073 3.927 11 N -0.353 5.353 12 C 0.401 3.599 13 O -0.521 6.521 14 N -0.364 5.364 15 C -0.014 4.014 16 C -0.166 4.166 17 C -0.137 4.137 18 C -0.047 4.047 19 H 0.056 0.944 20 N -0.295 5.295 21 C -0.080 4.080 22 C -0.165 4.165 23 C 0.015 3.985 24 H 0.115 0.885 25 C -0.237 4.237 26 C -0.223 4.223 27 H 0.064 0.936 28 H 0.029 0.971 29 H 0.089 0.911 30 H 0.234 0.766 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.128 0.872 34 H 0.059 0.941 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.168 0.832 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.489 0.354 15.247 15.259 hybrid contribution 0.917 0.103 -0.546 1.072 sum 0.428 0.457 14.701 14.714 Atomic orbital electron populations 1.70059 1.06898 1.26666 1.48992 1.25578 0.95272 1.01578 0.94033 0.85801 0.78336 0.79509 0.79145 1.20196 1.22199 1.18563 1.20638 0.92346 0.89308 1.51710 0.92216 1.19291 0.93815 0.90467 0.95697 1.20529 0.97371 0.94612 0.80213 1.44868 1.12114 1.68331 1.09962 1.16064 0.83961 0.79186 0.80728 1.90778 1.26434 1.54546 1.80342 1.47059 1.11377 1.65588 1.12346 1.21827 0.82872 0.96351 1.00373 1.21885 1.00646 0.95212 0.98893 1.21327 0.91125 1.03188 0.98015 1.22184 0.90588 0.93967 0.97913 0.94410 1.61948 1.09816 1.48050 1.09653 1.23158 0.95747 0.91310 0.97799 1.22656 0.94006 1.00267 0.99558 1.22546 0.87297 0.97795 0.90900 0.88462 1.22948 1.01677 1.06247 0.92826 1.22924 0.98118 0.99263 1.01976 0.93576 0.97143 0.91080 0.76560 0.88890 0.91216 0.87162 0.94055 0.88857 0.89875 0.83177 0.89418 0.91208 0.91396 0.93066 0.90859 0.90287 0.89567 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.65 10.29 21.45 0.22 -48.43 16 2 C 0.04 1.89 5.27 84.66 0.45 2.34 16 3 Si 0.95 40.77 29.54 68.60 2.03 42.79 16 4 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.30 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 7 C -0.50 -25.17 8.30 25.60 0.21 -24.96 16 8 H 0.06 2.94 7.81 -2.91 -0.02 2.91 16 9 C 0.01 0.38 2.05 -52.93 -0.11 0.27 16 10 C 0.20 9.83 4.64 86.38 0.40 10.23 16 11 N -0.70 -31.55 5.13 -478.52 -2.45 -34.00 16 12 C 0.70 30.98 8.24 179.05 1.47 32.45 16 13 O -0.64 -32.40 13.34 -4.00 -0.05 -32.45 16 14 N -0.63 -21.35 2.91 -809.05 -2.36 -23.70 16 15 C 0.11 2.82 6.40 86.03 0.55 3.37 16 16 C -0.13 -2.81 5.92 30.79 0.18 -2.62 16 17 C -0.10 -1.87 5.86 30.27 0.18 -1.70 16 18 C 0.07 1.71 2.72 45.42 0.12 1.84 16 19 H 0.04 1.35 8.04 -2.39 -0.02 1.33 16 20 N -0.67 -15.18 7.42 -484.41 -3.59 -18.77 16 21 C 0.05 1.18 7.63 86.79 0.66 1.84 16 22 C -0.13 -4.08 4.92 31.58 0.16 -3.93 16 23 C 0.12 3.50 3.31 46.14 0.15 3.65 16 24 H 0.10 2.30 8.13 -2.38 -0.02 2.28 16 25 C -0.20 -8.64 9.96 30.62 0.30 -8.34 16 26 C -0.19 -7.53 9.92 30.62 0.30 -7.23 16 27 H 0.25 13.87 8.32 -92.71 -0.77 13.10 16 28 H 0.01 0.52 8.05 -2.39 -0.02 0.50 16 29 H 0.07 4.10 5.92 -2.39 -0.01 4.09 16 30 H 0.40 16.97 5.54 -92.70 -0.51 16.45 16 31 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.07 2.04 5.74 -2.39 -0.01 2.02 16 33 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.09 1.28 8.11 -2.39 -0.02 1.26 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.35 5.75 8.79 -89.69 -0.79 4.96 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.05 2.17 6.40 -2.39 -0.02 2.16 16 42 H 0.07 3.06 8.14 -2.38 -0.02 3.04 16 43 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 44 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 45 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -63.79 345.53 -1.48 -65.27 By element: Atomic # 1 Polarization: 42.39 SS G_CDS: -0.31 Total: 42.08 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 5.04 Total: 7.21 kcal Atomic # 7 Polarization: -116.72 SS G_CDS: -8.18 Total: -124.90 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.05 Total: -32.45 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.79 kcal Total: -63.79 -1.48 -65.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891870769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.645 kcal (2) G-P(sol) polarization free energy of solvation -63.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds