Wall clock time and date at job start Tue Mar 31 2020 07:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00192 * 2 1 4 4 H 1.48499 * 109.46940 * 270.00475 * 3 2 1 5 5 H 1.48504 * 109.46941 * 29.99947 * 3 2 1 6 6 H 1.48493 * 109.47327 * 150.00074 * 3 2 1 7 7 C 1.37874 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00256 * 182.56308 * 7 2 1 9 9 C 1.50701 * 120.00267 * 2.55979 * 7 2 1 10 10 C 1.53002 * 115.54980 * 325.23198 * 9 7 2 11 11 N 1.46505 * 109.46903 * 305.31691 * 10 9 7 12 12 C 1.34771 * 119.99865 * 184.85115 * 11 10 9 13 13 O 1.21589 * 120.00281 * 5.12113 * 12 11 10 14 14 N 1.34783 * 119.99871 * 185.12608 * 12 11 10 15 15 C 1.44510 * 116.71831 * 357.93076 * 14 12 11 16 16 C 1.51578 * 112.86299 * 205.77193 * 15 14 12 17 17 C 1.51324 * 112.19906 * 318.31289 * 16 15 14 18 18 C 1.50901 * 113.31873 * 55.03917 * 17 16 15 19 19 H 1.09002 * 109.06534 * 190.30237 * 18 17 16 20 20 N 1.47804 * 110.45820 * 70.54335 * 18 17 16 21 21 C 1.47392 * 107.39896 * 206.09417 * 20 18 17 22 22 C 1.53826 * 107.58504 * 19.08467 * 21 20 18 23 23 C 1.44201 * 116.65636 * 177.82300 * 14 12 11 24 24 H 1.08998 * 108.79336 * 283.16165 * 23 14 12 25 25 C 1.53004 * 117.49653 * 110.89510 * 9 7 2 26 26 C 1.52996 * 117.50299 * 179.55494 * 9 7 2 27 27 H 0.96996 * 119.99855 * 5.00007 * 1 2 3 28 28 H 1.08997 * 109.46829 * 185.32101 * 10 9 7 29 29 H 1.08994 * 109.47328 * 65.31675 * 10 9 7 30 30 H 0.96996 * 119.99620 * 4.85323 * 11 10 9 31 31 H 1.09004 * 108.80632 * 84.89729 * 15 14 12 32 32 H 1.09003 * 108.71717 * 326.58095 * 15 14 12 33 33 H 1.09001 * 108.93545 * 197.61154 * 16 15 14 34 34 H 1.09006 * 108.86412 * 78.96480 * 16 15 14 35 35 H 1.09006 * 108.71777 * 294.04851 * 17 16 15 36 36 H 1.08999 * 108.61641 * 175.96255 * 17 16 15 37 37 H 1.00904 * 111.00275 * 327.60019 * 20 18 17 38 38 H 1.08997 * 109.83309 * 259.57233 * 21 20 18 39 39 H 1.08998 * 109.90698 * 138.64037 * 21 20 18 40 40 H 1.09003 * 110.26634 * 118.09119 * 22 21 20 41 41 H 1.09000 * 110.26716 * 240.05254 * 22 21 20 42 42 H 1.08996 * 117.49595 * 215.00626 * 25 9 7 43 43 H 1.09000 * 117.49767 * 0.02562 * 25 9 7 44 44 H 1.09006 * 117.49873 * 359.97438 * 26 9 7 45 45 H 1.08996 * 117.49982 * 144.97269 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0837 -1.1946 0.0413 9 6 1.2522 -2.4985 -0.0594 10 6 -0.0893 -2.5204 0.6761 11 7 0.1103 -2.1093 2.0681 12 6 -0.9198 -2.1473 2.9362 13 8 -1.9898 -2.6096 2.5902 14 7 -0.7640 -1.6727 4.1881 15 6 0.5494 -1.1819 4.5380 16 6 0.8285 -1.2559 6.0261 17 6 -0.3661 -0.8339 6.8536 18 6 -1.6199 -1.6092 6.5312 19 1 -2.4685 -1.1348 7.0242 20 7 -1.5031 -3.0027 7.0098 21 6 -2.3829 -3.8331 6.1679 22 6 -2.6720 -3.0449 4.8790 23 6 -1.9261 -1.7043 5.0413 24 1 -2.5916 -0.8887 4.7584 25 6 1.3676 -3.3232 -1.3430 26 6 2.0745 -3.7886 -0.0675 27 1 -0.4850 0.8368 -0.0732 28 1 -0.5011 -3.5292 0.6507 29 1 -0.7815 -1.8330 0.1900 30 1 0.9839 -1.8098 2.3648 31 1 0.6340 -0.1440 4.2159 32 1 1.2965 -1.7750 4.0105 33 1 1.6698 -0.6038 6.2610 34 1 1.0934 -2.2813 6.2844 35 1 -0.5555 0.2254 6.6796 36 1 -0.1275 -0.9772 7.9074 37 1 -0.5476 -3.3231 6.9605 38 1 -3.3154 -4.0355 6.6946 39 1 -1.8851 -4.7715 5.9237 40 1 -2.2920 -3.5859 4.0123 41 1 -3.7430 -2.8709 4.7750 42 1 0.4878 -3.8814 -1.6633 43 1 1.9880 -2.9225 -2.1446 44 1 3.1598 -3.6940 -0.0307 45 1 1.6601 -4.6529 0.4516 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891870770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:32 Heat of formation + Delta-G solvation = 20.622090 kcal Electronic energy + Delta-G solvation = -25435.741579 eV Core-core repulsion = 22068.461132 eV Total energy + Delta-G solvation = -3367.280447 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.82333 -38.27315 -36.68993 -35.52917 -33.06925 -32.98090 -32.19785 -29.63326 -28.73874 -26.03427 -25.38979 -24.50222 -22.84619 -21.30697 -21.16656 -20.03468 -19.25109 -18.20964 -17.63010 -16.34051 -16.21038 -15.66496 -15.38927 -14.88739 -14.59668 -14.51260 -14.12832 -14.01261 -13.47869 -13.29596 -13.03928 -12.82535 -12.44543 -12.04380 -11.89362 -11.60133 -11.49525 -11.25856 -11.12667 -11.05255 -10.78896 -10.77037 -10.65419 -10.54296 -10.50144 -10.26137 -9.66469 -9.07709 -8.89929 -8.87307 -8.61810 -8.29585 -8.08276 -7.64419 -6.01955 -4.22892 3.17931 3.27392 3.27975 3.31100 3.96184 4.20688 4.25714 4.58758 4.74093 4.77719 4.84655 4.97482 5.00441 5.12371 5.34540 5.44062 5.47058 5.51228 5.59684 5.74628 5.80079 5.86068 5.98069 6.02015 6.03095 6.11179 6.21591 6.29561 6.32349 6.53194 6.61155 6.64448 6.74285 6.86089 6.87922 7.03299 7.23962 7.28521 7.35227 7.51759 7.60895 7.77032 7.97731 8.29705 8.73100 8.92952 9.40265 9.45288 10.86019 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017653 B = 0.005509 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.778154 B = 5081.575765 C = 5848.128840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.496 4.496 8 H 0.060 0.940 9 C 0.036 3.964 10 C 0.181 3.819 11 N -0.699 5.699 12 C 0.693 3.307 13 O -0.600 6.600 14 N -0.620 5.620 15 C 0.116 3.884 16 C -0.127 4.127 17 C -0.116 4.116 18 C 0.077 3.923 19 H 0.090 0.910 20 N -0.671 5.671 21 C 0.042 3.958 22 C -0.169 4.169 23 C 0.150 3.850 24 H 0.061 0.939 25 C -0.198 4.198 26 C -0.212 4.212 27 H 0.262 0.738 28 H 0.019 0.981 29 H 0.110 0.890 30 H 0.395 0.605 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.334 0.666 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.121 0.879 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.110 -2.255 12.431 12.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.534 4.534 8 H 0.078 0.922 9 C 0.035 3.965 10 C 0.058 3.942 11 N -0.351 5.351 12 C 0.395 3.605 13 O -0.481 6.481 14 N -0.358 5.358 15 C -0.008 4.008 16 C -0.165 4.165 17 C -0.155 4.155 18 C -0.034 4.034 19 H 0.108 0.892 20 N -0.300 5.300 21 C -0.088 4.088 22 C -0.208 4.208 23 C 0.043 3.957 24 H 0.079 0.921 25 C -0.237 4.237 26 C -0.250 4.250 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.128 0.872 30 H 0.232 0.768 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.150 0.850 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.138 0.862 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.489 -2.348 12.835 13.133 hybrid contribution 1.435 1.081 -0.917 2.017 sum -0.054 -1.268 11.918 11.985 Atomic orbital electron populations 1.69894 1.05630 1.26643 1.47897 1.25000 0.94837 0.99000 0.94160 0.86602 0.79758 0.83387 0.78386 1.20539 1.21209 1.19816 1.20508 0.92474 0.88611 1.51778 0.92165 1.19259 0.93141 0.89705 0.94422 1.20950 0.97623 0.96593 0.79044 1.45118 1.10962 1.68477 1.10506 1.16029 0.84699 0.79427 0.80368 1.90724 1.26656 1.53172 1.77587 1.45872 1.10157 1.67575 1.12243 1.20692 0.84443 0.99920 0.95752 1.21121 0.98607 1.02361 0.94454 1.20756 0.93965 1.00321 1.00414 1.21791 0.98742 0.90614 0.92218 0.89206 1.62424 1.12578 1.01810 1.53160 1.22661 0.97463 0.96225 0.92433 1.23510 1.00947 0.96375 1.00004 1.21003 0.86150 0.98471 0.90057 0.92093 1.22935 1.01537 1.06636 0.92555 1.22945 0.98191 1.00444 1.03381 0.92755 0.96296 0.87208 0.76831 0.92408 0.90784 0.90145 0.91916 0.91188 0.90679 0.85013 0.91250 0.92437 0.86152 0.91164 0.91452 0.90236 0.90712 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.65 10.14 55.43 0.56 -22.09 16 2 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 3 Si 0.89 19.68 29.54 -169.99 -5.02 14.65 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 7 C -0.50 -12.35 8.32 -34.44 -0.29 -12.64 16 8 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 9 C 0.04 0.83 2.07 -155.66 -0.32 0.51 16 10 C 0.18 4.31 4.62 -4.04 -0.02 4.29 16 11 N -0.70 -15.05 4.93 -65.22 -0.32 -15.37 16 12 C 0.69 14.57 7.61 -86.92 -0.66 13.91 16 13 O -0.60 -14.19 13.01 5.29 0.07 -14.12 16 14 N -0.62 -10.48 3.10 -175.48 -0.54 -11.02 16 15 C 0.12 1.66 5.68 -5.82 -0.03 1.62 16 16 C -0.13 -1.36 5.82 -28.30 -0.16 -1.53 16 17 C -0.12 -1.21 5.30 -28.63 -0.15 -1.36 16 18 C 0.08 0.93 3.38 -68.57 -0.23 0.70 16 19 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 20 N -0.67 -8.10 7.28 -106.69 -0.78 -8.88 16 21 C 0.04 0.54 7.56 -3.12 -0.02 0.51 16 22 C -0.17 -2.64 5.64 -25.64 -0.14 -2.79 16 23 C 0.15 2.30 3.33 -68.80 -0.23 2.07 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 25 C -0.20 -4.30 9.96 -26.69 -0.27 -4.57 16 26 C -0.21 -4.40 9.93 -26.70 -0.26 -4.67 16 27 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 28 H 0.02 0.45 8.05 -51.93 -0.42 0.03 16 29 H 0.11 2.97 5.89 -51.93 -0.31 2.67 16 30 H 0.40 8.19 5.44 -40.82 -0.22 7.97 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.08 6.17 -51.93 -0.32 0.76 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.64 7.12 -51.93 -0.37 0.27 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.33 3.86 7.34 -39.29 -0.29 3.58 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.12 2.29 4.92 -52.67 -0.26 2.03 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 44 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 340.74 15.07 5.13 5.13 Total: -1.00 -27.25 340.74 -11.02 -38.26 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: -7.22 Total: 15.60 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -2.89 Total: -2.17 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -1.08 Total: -57.36 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.07 Total: -14.12 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.25 -11.02 -38.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891870770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.886 kcal (2) G-P(sol) polarization free energy of solvation -27.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds