Wall clock time and date at job start Tue Mar 31 2020 07:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00192 * 2 1 4 4 H 1.48499 * 109.46940 * 270.00475 * 3 2 1 5 5 H 1.48504 * 109.46941 * 29.99947 * 3 2 1 6 6 H 1.48493 * 109.47327 * 150.00074 * 3 2 1 7 7 C 1.37874 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00256 * 182.56308 * 7 2 1 9 9 C 1.50701 * 120.00267 * 2.55979 * 7 2 1 10 10 C 1.53002 * 115.54980 * 325.23198 * 9 7 2 11 11 N 1.46505 * 109.46903 * 305.31691 * 10 9 7 12 12 C 1.34771 * 119.99865 * 184.85115 * 11 10 9 13 13 O 1.21589 * 120.00281 * 5.12113 * 12 11 10 14 14 N 1.34783 * 119.99871 * 185.12608 * 12 11 10 15 15 C 1.44510 * 116.71831 * 357.93076 * 14 12 11 16 16 C 1.51578 * 112.86299 * 205.77193 * 15 14 12 17 17 C 1.51324 * 112.19906 * 318.31289 * 16 15 14 18 18 C 1.50901 * 113.31873 * 55.03917 * 17 16 15 19 19 H 1.09002 * 109.06534 * 190.30237 * 18 17 16 20 20 N 1.47804 * 110.45820 * 70.54335 * 18 17 16 21 21 C 1.47392 * 107.39896 * 206.09417 * 20 18 17 22 22 C 1.53826 * 107.58504 * 19.08467 * 21 20 18 23 23 C 1.44201 * 116.65636 * 177.82300 * 14 12 11 24 24 H 1.08998 * 108.79336 * 283.16165 * 23 14 12 25 25 C 1.53004 * 117.49653 * 110.89510 * 9 7 2 26 26 C 1.52996 * 117.50299 * 179.55494 * 9 7 2 27 27 H 0.96996 * 119.99855 * 5.00007 * 1 2 3 28 28 H 1.08997 * 109.46829 * 185.32101 * 10 9 7 29 29 H 1.08994 * 109.47328 * 65.31675 * 10 9 7 30 30 H 0.96996 * 119.99620 * 4.85323 * 11 10 9 31 31 H 1.09004 * 108.80632 * 84.89729 * 15 14 12 32 32 H 1.09003 * 108.71717 * 326.58095 * 15 14 12 33 33 H 1.09001 * 108.93545 * 197.61154 * 16 15 14 34 34 H 1.09006 * 108.86412 * 78.96480 * 16 15 14 35 35 H 1.09006 * 108.71777 * 294.04851 * 17 16 15 36 36 H 1.08999 * 108.61641 * 175.96255 * 17 16 15 37 37 H 1.00904 * 111.00275 * 327.60019 * 20 18 17 38 38 H 1.08997 * 109.83309 * 259.57233 * 21 20 18 39 39 H 1.08998 * 109.90698 * 138.64037 * 21 20 18 40 40 H 1.09003 * 110.26634 * 118.09119 * 22 21 20 41 41 H 1.09000 * 110.26716 * 240.05254 * 22 21 20 42 42 H 1.08996 * 117.49595 * 215.00626 * 25 9 7 43 43 H 1.09000 * 117.49767 * 0.02562 * 25 9 7 44 44 H 1.09006 * 117.49873 * 359.97438 * 26 9 7 45 45 H 1.08996 * 117.49982 * 144.97269 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0837 -1.1946 0.0413 9 6 1.2522 -2.4985 -0.0594 10 6 -0.0893 -2.5204 0.6761 11 7 0.1103 -2.1093 2.0681 12 6 -0.9198 -2.1473 2.9362 13 8 -1.9898 -2.6096 2.5902 14 7 -0.7640 -1.6727 4.1881 15 6 0.5494 -1.1819 4.5380 16 6 0.8285 -1.2559 6.0261 17 6 -0.3661 -0.8339 6.8536 18 6 -1.6199 -1.6092 6.5312 19 1 -2.4685 -1.1348 7.0242 20 7 -1.5031 -3.0027 7.0098 21 6 -2.3829 -3.8331 6.1679 22 6 -2.6720 -3.0449 4.8790 23 6 -1.9261 -1.7043 5.0413 24 1 -2.5916 -0.8887 4.7584 25 6 1.3676 -3.3232 -1.3430 26 6 2.0745 -3.7886 -0.0675 27 1 -0.4850 0.8368 -0.0732 28 1 -0.5011 -3.5292 0.6507 29 1 -0.7815 -1.8330 0.1900 30 1 0.9839 -1.8098 2.3648 31 1 0.6340 -0.1440 4.2159 32 1 1.2965 -1.7750 4.0105 33 1 1.6698 -0.6038 6.2610 34 1 1.0934 -2.2813 6.2844 35 1 -0.5555 0.2254 6.6796 36 1 -0.1275 -0.9772 7.9074 37 1 -0.5476 -3.3231 6.9605 38 1 -3.3154 -4.0355 6.6946 39 1 -1.8851 -4.7715 5.9237 40 1 -2.2920 -3.5859 4.0123 41 1 -3.7430 -2.8709 4.7750 42 1 0.4878 -3.8814 -1.6633 43 1 1.9880 -2.9225 -2.1446 44 1 3.1598 -3.6940 -0.0307 45 1 1.6601 -4.6529 0.4516 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891870770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:31 Heat of formation + Delta-G solvation = 3.359520 kcal Electronic energy + Delta-G solvation = -25436.490140 eV Core-core repulsion = 22068.461132 eV Total energy + Delta-G solvation = -3368.029008 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.16405 -39.72099 -38.41754 -36.76984 -34.68667 -34.24219 -34.09870 -30.75183 -29.91320 -27.81791 -27.13593 -25.78433 -23.90153 -22.99003 -22.46089 -21.44000 -21.07208 -19.47555 -19.08159 -18.04519 -17.50310 -16.90340 -16.84140 -16.64544 -15.95465 -15.70903 -15.65287 -15.39980 -14.91145 -14.63342 -14.54147 -14.13015 -13.91428 -13.60025 -13.34906 -13.03198 -12.95579 -12.73755 -12.70035 -12.43798 -12.29560 -12.11427 -12.03415 -11.86696 -11.71260 -11.51373 -11.46419 -10.91473 -10.69840 -10.53532 -10.13434 -9.83770 -9.51145 -9.24656 -7.93251 -6.19934 1.41804 1.46400 1.53724 1.86039 2.32547 2.41744 2.97275 3.15998 3.31636 3.63123 3.69710 3.79114 3.88795 3.92804 3.99286 4.26618 4.29317 4.32000 4.43237 4.53460 4.58230 4.63314 4.76433 4.78361 4.82437 4.92439 4.94895 5.00916 5.05837 5.07721 5.13683 5.14213 5.28813 5.31744 5.33368 5.52356 5.60402 5.81242 5.93797 5.94512 5.99974 6.09102 6.38297 6.39814 6.81702 7.27323 7.45171 7.79270 8.92059 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017653 B = 0.005509 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.778154 B = 5081.575765 C = 5848.128840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.036 3.964 3 Si 0.948 3.052 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.262 1.262 7 C -0.502 4.502 8 H 0.059 0.941 9 C 0.007 3.993 10 C 0.196 3.804 11 N -0.697 5.697 12 C 0.685 3.315 13 O -0.633 6.633 14 N -0.610 5.610 15 C 0.109 3.891 16 C -0.119 4.119 17 C -0.113 4.113 18 C 0.085 3.915 19 H 0.100 0.900 20 N -0.662 5.662 21 C 0.051 3.949 22 C -0.168 4.168 23 C 0.142 3.858 24 H 0.042 0.958 25 C -0.199 4.199 26 C -0.187 4.187 27 H 0.255 0.745 28 H 0.010 0.990 29 H 0.074 0.926 30 H 0.399 0.601 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.339 0.661 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.544 -2.158 14.650 14.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.165 4.165 3 Si 0.774 3.226 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.186 1.186 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.006 3.994 10 C 0.072 3.928 11 N -0.350 5.350 12 C 0.386 3.614 13 O -0.517 6.517 14 N -0.347 5.347 15 C -0.014 4.014 16 C -0.157 4.157 17 C -0.151 4.151 18 C -0.026 4.026 19 H 0.118 0.882 20 N -0.291 5.291 21 C -0.079 4.079 22 C -0.207 4.207 23 C 0.035 3.965 24 H 0.060 0.940 25 C -0.237 4.237 26 C -0.224 4.224 27 H 0.065 0.935 28 H 0.028 0.972 29 H 0.092 0.908 30 H 0.236 0.764 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.118 0.882 37 H 0.156 0.844 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.104 0.896 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.202 -2.250 15.091 15.259 hybrid contribution 0.881 1.015 -1.654 2.131 sum 1.082 -1.235 13.437 13.537 Atomic orbital electron populations 1.70087 1.06825 1.26622 1.49086 1.25590 0.95315 1.01602 0.94029 0.85705 0.78972 0.79904 0.77969 1.20915 1.21748 1.18584 1.20680 0.92436 0.89386 1.51394 0.92240 1.19309 0.93476 0.90593 0.95983 1.20567 0.97265 0.94951 0.80058 1.44970 1.11339 1.68789 1.09853 1.16299 0.84040 0.79449 0.81600 1.90712 1.27805 1.54515 1.78644 1.45920 1.11638 1.66249 1.10878 1.20899 0.82764 0.98942 0.98774 1.21117 0.99633 1.03722 0.91251 1.20770 0.92631 1.00092 1.01617 1.21807 1.00406 0.91095 0.89262 0.88200 1.62458 1.12838 1.01524 1.52252 1.22579 0.98375 0.95904 0.91069 1.23354 1.00468 0.96620 1.00261 1.21207 0.85424 0.97640 0.92185 0.93975 1.22959 1.02037 1.06225 0.92495 1.22927 0.98474 0.99056 1.01940 0.93506 0.97171 0.90823 0.76385 0.93392 0.91239 0.87630 0.90936 0.90806 0.88235 0.84412 0.89932 0.92124 0.89662 0.91715 0.90799 0.90230 0.89607 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.78 10.14 21.45 0.22 -47.56 16 2 C 0.04 1.82 5.30 84.65 0.45 2.27 16 3 Si 0.95 40.31 29.54 68.60 2.03 42.34 16 4 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 5 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 7 C -0.50 -24.82 8.32 25.60 0.21 -24.61 16 8 H 0.06 2.90 7.81 -2.91 -0.02 2.88 16 9 C 0.01 0.33 2.07 -52.93 -0.11 0.22 16 10 C 0.20 9.60 4.62 86.38 0.40 10.00 16 11 N -0.70 -30.80 4.93 -478.53 -2.36 -33.16 16 12 C 0.68 29.73 7.61 179.05 1.36 31.10 16 13 O -0.63 -31.45 13.01 -4.00 -0.05 -31.50 16 14 N -0.61 -20.72 3.10 -827.36 -2.57 -23.28 16 15 C 0.11 3.01 5.68 86.28 0.49 3.50 16 16 C -0.12 -2.18 5.82 29.58 0.17 -2.01 16 17 C -0.11 -1.96 5.30 29.36 0.16 -1.80 16 18 C 0.08 1.87 3.38 43.86 0.15 2.02 16 19 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 20 N -0.66 -14.21 7.28 -491.44 -3.58 -17.79 16 21 C 0.05 1.23 7.56 86.49 0.65 1.88 16 22 C -0.17 -5.32 5.64 31.30 0.18 -5.14 16 23 C 0.14 4.34 3.33 45.65 0.15 4.49 16 24 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 25 C -0.20 -8.51 9.96 30.62 0.30 -8.21 16 26 C -0.19 -7.48 9.93 30.62 0.30 -7.17 16 27 H 0.26 13.56 8.32 -92.71 -0.77 12.79 16 28 H 0.01 0.50 8.05 -2.39 -0.02 0.48 16 29 H 0.07 4.18 5.89 -2.39 -0.01 4.17 16 30 H 0.40 16.74 5.44 -92.71 -0.50 16.23 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 1.98 6.17 -2.39 -0.01 1.96 16 33 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.22 7.12 -2.38 -0.02 1.20 16 35 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.34 6.78 7.34 -89.69 -0.66 6.12 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.09 3.39 4.92 -14.08 -0.07 3.32 16 41 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 43 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 44 H 0.09 3.25 8.14 -2.38 -0.02 3.23 16 45 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -59.97 340.74 -1.67 -61.63 By element: Atomic # 1 Polarization: 43.02 SS G_CDS: -0.22 Total: 42.80 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 4.87 Total: 6.54 kcal Atomic # 7 Polarization: -113.51 SS G_CDS: -8.29 Total: -121.80 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.05 Total: -31.50 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -59.97 -1.67 -61.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891870770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.991 kcal (2) G-P(sol) polarization free energy of solvation -59.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds