Wall clock time and date at job start Tue Mar 31 2020 07:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99797 * 2 1 4 4 H 1.48503 * 109.46691 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47518 * 300.00508 * 3 2 1 6 6 H 1.48498 * 109.46931 * 60.00551 * 3 2 1 7 7 C 1.37870 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00005 * 173.35255 * 7 2 1 9 9 C 1.50704 * 120.00169 * 353.34737 * 7 2 1 10 10 C 1.52988 * 115.55229 * 298.41089 * 9 7 2 11 11 N 1.46497 * 109.47241 * 274.94176 * 10 9 7 12 12 C 1.34781 * 120.00015 * 185.00301 * 11 10 9 13 13 O 1.21584 * 120.00091 * 4.98902 * 12 11 10 14 14 N 1.34781 * 120.00027 * 184.98270 * 12 11 10 15 15 C 1.46793 * 119.62595 * 354.78770 * 14 12 11 16 16 C 1.51191 * 107.86981 * 231.79612 * 15 14 12 17 17 C 1.52750 * 109.68709 * 302.97076 * 16 15 14 18 18 C 1.52999 * 110.70636 * 62.70271 * 17 16 15 19 19 H 1.08997 * 111.49147 * 69.26779 * 18 17 16 20 20 N 1.48719 * 107.18097 * 191.73387 * 18 17 16 21 21 C 1.47746 * 108.11283 * 89.46426 * 20 18 17 22 22 C 1.54661 * 107.03466 * 2.42103 * 21 20 18 23 23 C 1.45245 * 119.63034 * 174.75717 * 14 12 11 24 24 H 1.09007 * 110.99788 * 9.99386 * 23 14 12 25 25 C 1.53006 * 117.51243 * 84.11129 * 9 7 2 26 26 C 1.53000 * 117.49451 * 152.73677 * 9 7 2 27 27 H 0.97005 * 119.99955 * 4.99660 * 1 2 3 28 28 H 1.08999 * 109.47465 * 154.94264 * 10 9 7 29 29 H 1.09005 * 109.47259 * 34.94361 * 10 9 7 30 30 H 0.97002 * 120.00448 * 5.00941 * 11 10 9 31 31 H 1.09003 * 109.81770 * 351.82975 * 15 14 12 32 32 H 1.09002 * 109.82284 * 112.74518 * 15 14 12 33 33 H 1.09005 * 109.80040 * 182.43497 * 16 15 14 34 34 H 1.08999 * 108.28049 * 62.57471 * 16 15 14 35 35 H 1.08998 * 109.22219 * 302.40127 * 17 16 15 36 36 H 1.08996 * 109.22120 * 183.01220 * 17 16 15 37 37 H 1.00899 * 110.99650 * 211.43016 * 20 18 17 38 38 H 1.09001 * 109.91707 * 121.77113 * 21 20 18 39 39 H 1.08997 * 109.91687 * 242.87261 * 21 20 18 40 40 H 1.09002 * 110.85191 * 141.19282 * 22 21 20 41 41 H 1.08996 * 110.85693 * 264.61658 * 22 21 20 42 42 H 1.08992 * 117.49579 * 214.96931 * 25 9 7 43 43 H 1.08998 * 117.50215 * 359.97438 * 25 9 7 44 44 H 1.09000 * 117.50304 * 359.97438 * 26 9 7 45 45 H 1.09006 * 117.49878 * 144.97733 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0791 -1.1972 -0.1088 9 6 1.2586 -2.4948 0.1501 10 6 0.4870 -2.6652 1.4601 11 7 1.3875 -3.1816 2.4937 12 6 0.9029 -3.5068 3.7086 13 8 -0.2936 -3.4581 3.9188 14 7 1.7447 -3.8862 4.6905 15 6 3.1733 -4.0533 4.3972 16 6 3.5907 -5.4212 4.8876 17 6 3.2780 -5.5514 6.3771 18 6 1.7724 -5.4401 6.6256 19 1 1.2385 -6.3078 6.2380 20 7 1.5793 -5.2870 8.0922 21 6 1.6136 -3.8450 8.4119 22 6 1.7753 -3.0877 7.0731 23 6 1.2282 -4.1244 6.0269 24 1 0.1382 -4.1268 6.0298 25 6 0.6531 -3.1126 -1.1120 26 6 1.8879 -3.7455 -0.4670 27 1 -0.4850 0.8369 -0.0732 28 1 -0.3337 -3.3666 1.3098 29 1 0.0878 -1.7009 1.7747 30 1 2.3327 -3.2894 2.3039 31 1 3.3421 -3.9722 3.3234 32 1 3.7499 -3.2911 4.9213 33 1 4.6591 -5.5620 4.7240 34 1 3.0299 -6.1705 4.3289 35 1 3.7912 -4.7592 6.9221 36 1 3.6302 -6.5190 6.7345 37 1 0.7085 -5.7023 8.3875 38 1 0.6825 -3.5497 8.8956 39 1 2.4571 -3.6300 9.0679 40 1 1.1748 -2.1780 7.0669 41 1 2.8236 -2.8598 6.8804 42 1 -0.2949 -3.6405 -1.0089 43 1 0.7939 -2.5781 -2.0514 44 1 2.8411 -3.6274 -0.9823 45 1 1.7524 -4.6897 0.0606 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891870771.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:33 Heat of formation + Delta-G solvation = 5.801504 kcal Electronic energy + Delta-G solvation = -24738.921968 eV Core-core repulsion = 21370.998852 eV Total energy + Delta-G solvation = -3367.923116 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.65599 -38.60974 -36.73726 -35.54334 -33.20905 -32.61212 -32.08240 -29.30125 -29.25825 -26.34424 -25.38114 -24.49855 -22.61834 -21.38480 -21.11918 -20.36528 -19.40078 -18.57543 -17.90660 -16.86115 -16.23631 -15.93048 -15.12532 -14.67997 -14.48003 -14.45071 -14.36029 -13.91221 -13.54910 -13.35201 -13.19929 -12.96263 -12.53766 -12.35822 -12.12221 -11.70318 -11.57375 -11.44606 -11.40011 -11.02802 -10.92832 -10.84587 -10.79989 -10.52962 -10.44900 -10.32245 -9.72173 -9.45627 -9.04513 -8.95274 -8.65335 -8.41190 -8.22486 -7.90962 -6.09916 -4.16698 2.98354 3.23952 3.33202 3.34999 3.66801 3.95543 4.33503 4.40140 4.58630 4.69521 4.76715 4.89495 4.97381 5.00499 5.11273 5.16258 5.36666 5.39551 5.49663 5.50791 5.60976 5.72834 5.81221 5.83917 5.87761 5.96848 6.03045 6.09983 6.25556 6.29537 6.46616 6.54075 6.60329 6.67773 6.74960 6.92998 7.02818 7.14745 7.29832 7.33126 7.49233 7.55315 7.83702 8.32930 8.54469 8.83050 9.15140 9.48092 10.97627 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019988 B = 0.004253 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.511927 B = 6582.072472 C = 6998.287780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.072 3.928 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.498 4.498 8 H 0.061 0.939 9 C 0.036 3.964 10 C 0.178 3.822 11 N -0.725 5.725 12 C 0.700 3.300 13 O -0.600 6.600 14 N -0.619 5.619 15 C 0.111 3.889 16 C -0.136 4.136 17 C -0.099 4.099 18 C 0.064 3.936 19 H 0.085 0.915 20 N -0.676 5.676 21 C 0.048 3.952 22 C -0.156 4.156 23 C 0.137 3.863 24 H 0.105 0.895 25 C -0.169 4.169 26 C -0.208 4.208 27 H 0.262 0.738 28 H 0.038 0.962 29 H 0.083 0.917 30 H 0.393 0.607 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.338 0.662 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.492 -9.708 12.891 17.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.132 4.132 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.535 4.535 8 H 0.079 0.921 9 C 0.035 3.965 10 C 0.055 3.945 11 N -0.379 5.379 12 C 0.401 3.599 13 O -0.479 6.479 14 N -0.356 5.356 15 C -0.012 4.012 16 C -0.175 4.175 17 C -0.137 4.137 18 C -0.047 4.047 19 H 0.103 0.897 20 N -0.304 5.304 21 C -0.081 4.081 22 C -0.195 4.195 23 C 0.030 3.970 24 H 0.122 0.878 25 C -0.207 4.207 26 C -0.245 4.245 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.229 0.771 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.153 0.847 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.114 -9.637 13.267 17.500 hybrid contribution -0.001 1.258 -0.549 1.373 sum 6.113 -8.378 12.718 16.411 Atomic orbital electron populations 1.69963 1.05900 1.26957 1.48240 1.24986 0.94809 0.99012 0.94382 0.86561 0.80144 0.83773 0.77682 1.19708 1.20978 1.20920 1.20476 0.92973 0.88680 1.51409 0.92070 1.19100 0.97116 0.91195 0.89108 1.20912 0.89736 0.98176 0.85640 1.45531 1.12652 1.68292 1.11442 1.16018 0.84899 0.78160 0.80831 1.90857 1.13700 1.61349 1.81969 1.46578 1.07352 1.73236 1.08400 1.21273 0.81515 0.97207 1.01230 1.21531 1.01627 0.97611 0.96745 1.21339 0.94750 1.02502 0.95105 1.22825 0.97206 0.97392 0.87234 0.89666 1.62369 1.40317 1.13729 1.14027 1.22637 1.01427 0.87281 0.96764 1.23520 1.02328 0.98987 0.94707 1.22283 0.99817 0.93841 0.81109 0.87753 1.22751 0.94304 1.04009 0.99658 1.22869 0.97304 0.97281 1.07094 0.92768 0.94365 0.89919 0.77098 0.89625 0.91691 0.90402 0.91471 0.91524 0.91545 0.84668 0.92616 0.90641 0.90713 0.90655 0.91598 0.90018 0.90417 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.38 12.24 55.43 0.68 -23.70 16 2 C 0.07 1.92 5.22 -17.82 -0.09 1.82 16 3 Si 0.89 20.59 29.55 -169.99 -5.02 15.57 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.50 -12.87 8.85 -34.44 -0.30 -13.18 16 8 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 9 C 0.04 0.84 1.39 -155.66 -0.22 0.62 16 10 C 0.18 4.21 5.50 -4.05 -0.02 4.19 16 11 N -0.72 -14.45 5.35 -65.23 -0.35 -14.80 16 12 C 0.70 13.84 8.25 -86.91 -0.72 13.12 16 13 O -0.60 -14.15 15.68 5.29 0.08 -14.06 16 14 N -0.62 -9.33 2.78 -170.13 -0.47 -9.80 16 15 C 0.11 1.32 6.02 -4.79 -0.03 1.29 16 16 C -0.14 -1.33 5.94 -27.77 -0.17 -1.49 16 17 C -0.10 -0.97 5.12 -26.86 -0.14 -1.11 16 18 C 0.06 0.70 3.88 -65.94 -0.26 0.44 16 19 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 20 N -0.68 -6.55 6.96 -103.05 -0.72 -7.27 16 21 C 0.05 0.46 7.38 -2.49 -0.02 0.44 16 22 C -0.16 -1.80 6.13 -23.62 -0.14 -1.95 16 23 C 0.14 1.84 3.29 -65.61 -0.22 1.63 16 24 H 0.10 1.65 7.00 -51.93 -0.36 1.28 16 25 C -0.17 -3.79 9.88 -26.73 -0.26 -4.06 16 26 C -0.21 -4.22 9.75 -26.73 -0.26 -4.48 16 27 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 28 H 0.04 0.93 7.86 -51.93 -0.41 0.52 16 29 H 0.08 2.26 6.90 -51.93 -0.36 1.90 16 30 H 0.39 6.99 5.80 -40.82 -0.24 6.75 16 31 H 0.09 1.03 5.58 -51.93 -0.29 0.74 16 32 H 0.06 0.72 7.52 -51.93 -0.39 0.33 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.67 6.87 -51.93 -0.36 0.32 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.34 2.85 8.92 -39.29 -0.35 2.50 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 0.86 6.60 -51.93 -0.34 0.51 16 42 H 0.07 1.42 8.05 -51.93 -0.42 1.01 16 43 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 44 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 349.14 15.07 5.26 5.26 Total: -1.00 -29.86 349.14 -10.67 -40.53 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -7.29 Total: 10.98 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -2.84 Total: -2.70 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.86 Total: -55.57 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.08 Total: -14.06 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.86 -10.67 -40.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891870771.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.335 kcal (2) G-P(sol) polarization free energy of solvation -29.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds