Wall clock time and date at job start Tue Mar 31 2020 07:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99797 * 2 1 4 4 H 1.48503 * 109.46691 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47518 * 300.00508 * 3 2 1 6 6 H 1.48498 * 109.46931 * 60.00551 * 3 2 1 7 7 C 1.37870 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00005 * 173.35255 * 7 2 1 9 9 C 1.50704 * 120.00169 * 353.34737 * 7 2 1 10 10 C 1.52988 * 115.55229 * 298.41089 * 9 7 2 11 11 N 1.46497 * 109.47241 * 274.94176 * 10 9 7 12 12 C 1.34781 * 120.00015 * 185.00301 * 11 10 9 13 13 O 1.21584 * 120.00091 * 4.98902 * 12 11 10 14 14 N 1.34781 * 120.00027 * 184.98270 * 12 11 10 15 15 C 1.46793 * 119.62595 * 354.78770 * 14 12 11 16 16 C 1.51191 * 107.86981 * 231.79612 * 15 14 12 17 17 C 1.52750 * 109.68709 * 302.97076 * 16 15 14 18 18 C 1.52999 * 110.70636 * 62.70271 * 17 16 15 19 19 H 1.08997 * 111.49147 * 69.26779 * 18 17 16 20 20 N 1.48719 * 107.18097 * 191.73387 * 18 17 16 21 21 C 1.47746 * 108.11283 * 89.46426 * 20 18 17 22 22 C 1.54661 * 107.03466 * 2.42103 * 21 20 18 23 23 C 1.45245 * 119.63034 * 174.75717 * 14 12 11 24 24 H 1.09007 * 110.99788 * 9.99386 * 23 14 12 25 25 C 1.53006 * 117.51243 * 84.11129 * 9 7 2 26 26 C 1.53000 * 117.49451 * 152.73677 * 9 7 2 27 27 H 0.97005 * 119.99955 * 4.99660 * 1 2 3 28 28 H 1.08999 * 109.47465 * 154.94264 * 10 9 7 29 29 H 1.09005 * 109.47259 * 34.94361 * 10 9 7 30 30 H 0.97002 * 120.00448 * 5.00941 * 11 10 9 31 31 H 1.09003 * 109.81770 * 351.82975 * 15 14 12 32 32 H 1.09002 * 109.82284 * 112.74518 * 15 14 12 33 33 H 1.09005 * 109.80040 * 182.43497 * 16 15 14 34 34 H 1.08999 * 108.28049 * 62.57471 * 16 15 14 35 35 H 1.08998 * 109.22219 * 302.40127 * 17 16 15 36 36 H 1.08996 * 109.22120 * 183.01220 * 17 16 15 37 37 H 1.00899 * 110.99650 * 211.43016 * 20 18 17 38 38 H 1.09001 * 109.91707 * 121.77113 * 21 20 18 39 39 H 1.08997 * 109.91687 * 242.87261 * 21 20 18 40 40 H 1.09002 * 110.85191 * 141.19282 * 22 21 20 41 41 H 1.08996 * 110.85693 * 264.61658 * 22 21 20 42 42 H 1.08992 * 117.49579 * 214.96931 * 25 9 7 43 43 H 1.08998 * 117.50215 * 359.97438 * 25 9 7 44 44 H 1.09000 * 117.50304 * 359.97438 * 26 9 7 45 45 H 1.09006 * 117.49878 * 144.97733 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0791 -1.1972 -0.1088 9 6 1.2586 -2.4948 0.1501 10 6 0.4870 -2.6652 1.4601 11 7 1.3875 -3.1816 2.4937 12 6 0.9029 -3.5068 3.7086 13 8 -0.2936 -3.4581 3.9188 14 7 1.7447 -3.8862 4.6905 15 6 3.1733 -4.0533 4.3972 16 6 3.5907 -5.4212 4.8876 17 6 3.2780 -5.5514 6.3771 18 6 1.7724 -5.4401 6.6256 19 1 1.2385 -6.3078 6.2380 20 7 1.5793 -5.2870 8.0922 21 6 1.6136 -3.8450 8.4119 22 6 1.7753 -3.0877 7.0731 23 6 1.2282 -4.1244 6.0269 24 1 0.1382 -4.1268 6.0298 25 6 0.6531 -3.1126 -1.1120 26 6 1.8879 -3.7455 -0.4670 27 1 -0.4850 0.8369 -0.0732 28 1 -0.3337 -3.3666 1.3098 29 1 0.0878 -1.7009 1.7747 30 1 2.3327 -3.2894 2.3039 31 1 3.3421 -3.9722 3.3234 32 1 3.7499 -3.2911 4.9213 33 1 4.6591 -5.5620 4.7240 34 1 3.0299 -6.1705 4.3289 35 1 3.7912 -4.7592 6.9221 36 1 3.6302 -6.5190 6.7345 37 1 0.7085 -5.7023 8.3875 38 1 0.6825 -3.5497 8.8956 39 1 2.4571 -3.6300 9.0679 40 1 1.1748 -2.1780 7.0669 41 1 2.8236 -2.8598 6.8804 42 1 -0.2949 -3.6405 -1.0089 43 1 0.7939 -2.5781 -2.0514 44 1 2.8411 -3.6274 -0.9823 45 1 1.7524 -4.6897 0.0606 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891870771.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:33 Heat of formation + Delta-G solvation = -13.942448 kcal Electronic energy + Delta-G solvation = -24739.778130 eV Core-core repulsion = 21370.998852 eV Total energy + Delta-G solvation = -3368.779278 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.86484 -39.94586 -38.47918 -36.66055 -34.85204 -34.07642 -33.65480 -30.30895 -30.18208 -28.08805 -27.11487 -25.75596 -23.55763 -23.05654 -22.15583 -21.57572 -21.22026 -19.92904 -19.17720 -18.02200 -17.67116 -17.34819 -16.77209 -16.42969 -15.88780 -15.64541 -15.46886 -15.36615 -14.76525 -14.51401 -14.43581 -14.22749 -13.83736 -13.63428 -13.49660 -13.20999 -12.99158 -12.94394 -12.81956 -12.40151 -12.32900 -12.27189 -12.06222 -11.75906 -11.70622 -11.47467 -11.37030 -11.15563 -10.95192 -10.55730 -10.13931 -10.07621 -9.74812 -9.20398 -8.11624 -6.23127 1.40088 1.43913 1.53272 1.64345 2.12780 2.41246 2.91291 3.13195 3.21181 3.55356 3.62629 3.79489 3.82535 4.01171 4.08929 4.18235 4.22140 4.23861 4.48879 4.53894 4.54394 4.62317 4.66160 4.71955 4.78781 4.89600 4.94323 4.95501 4.98603 5.02504 5.09058 5.14757 5.24355 5.26133 5.43286 5.55561 5.56482 5.59673 5.69082 5.81399 5.82482 5.98925 6.35655 6.40194 6.81791 7.06045 7.44535 7.59750 8.95885 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019988 B = 0.004253 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.511927 B = 6582.072472 C = 6998.287780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.950 3.050 4 H -0.259 1.259 5 H -0.283 1.283 6 H -0.289 1.289 7 C -0.502 4.502 8 H 0.064 0.936 9 C 0.009 3.991 10 C 0.198 3.802 11 N -0.718 5.718 12 C 0.694 3.306 13 O -0.646 6.646 14 N -0.608 5.608 15 C 0.103 3.897 16 C -0.128 4.128 17 C -0.094 4.094 18 C 0.071 3.929 19 H 0.082 0.918 20 N -0.672 5.672 21 C 0.054 3.946 22 C -0.150 4.150 23 C 0.125 3.875 24 H 0.073 0.927 25 C -0.179 4.179 26 C -0.170 4.170 27 H 0.259 0.741 28 H 0.023 0.977 29 H 0.038 0.962 30 H 0.405 0.595 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.345 0.655 38 H 0.063 0.937 39 H 0.090 0.910 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.345 -10.853 13.957 19.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.177 4.177 3 Si 0.776 3.224 4 H -0.183 1.183 5 H -0.209 1.209 6 H -0.216 1.216 7 C -0.540 4.540 8 H 0.083 0.917 9 C 0.008 3.992 10 C 0.073 3.927 11 N -0.374 5.374 12 C 0.395 3.605 13 O -0.529 6.529 14 N -0.344 5.344 15 C -0.019 4.019 16 C -0.167 4.167 17 C -0.132 4.132 18 C -0.040 4.040 19 H 0.100 0.900 20 N -0.300 5.300 21 C -0.075 4.075 22 C -0.190 4.190 23 C 0.018 3.982 24 H 0.091 0.909 25 C -0.218 4.218 26 C -0.207 4.207 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.057 0.943 30 H 0.243 0.757 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.124 0.876 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.161 0.839 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.110 0.890 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.040 -10.811 14.361 20.121 hybrid contribution -0.902 1.581 -0.839 2.005 sum 8.137 -9.229 13.522 18.282 Atomic orbital electron populations 1.70095 1.07372 1.27376 1.49838 1.25711 0.95422 1.02177 0.94417 0.85622 0.79579 0.80006 0.77153 1.18322 1.20887 1.21565 1.20783 0.93217 0.89674 1.50301 0.91744 1.19075 0.98614 0.92249 0.89239 1.20387 0.90018 0.95570 0.86678 1.45260 1.12729 1.68293 1.11090 1.16234 0.84800 0.78082 0.81395 1.90820 1.16041 1.63255 1.82774 1.46625 1.08249 1.71649 1.07881 1.21578 0.79321 0.99338 1.01618 1.21506 1.03170 0.95534 0.96450 1.21321 0.93413 1.03319 0.95134 1.22774 0.98135 0.95472 0.87599 0.89965 1.62431 1.40881 1.13763 1.12907 1.22640 1.02513 0.86771 0.95598 1.23479 1.02172 0.98095 0.95240 1.22447 0.98374 0.96572 0.80776 0.90927 1.22722 0.95800 1.04573 0.98656 1.22876 0.96659 0.96399 1.04753 0.93146 0.95849 0.94341 0.75658 0.89684 0.90277 0.87578 0.92148 0.91246 0.90217 0.83865 0.91827 0.89220 0.92244 0.89923 0.91339 0.91135 0.89021 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.18 12.24 21.45 0.26 -51.92 16 2 C 0.02 1.24 5.22 84.65 0.44 1.68 16 3 Si 0.95 42.44 29.55 68.60 2.03 44.46 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.50 -25.83 8.85 25.60 0.23 -25.61 16 8 H 0.06 3.20 7.82 -2.91 -0.02 3.18 16 9 C 0.01 0.43 1.39 -52.93 -0.07 0.36 16 10 C 0.20 9.63 5.50 86.38 0.47 10.11 16 11 N -0.72 -28.85 5.35 -478.55 -2.56 -31.41 16 12 C 0.69 28.03 8.25 179.05 1.48 29.50 16 13 O -0.65 -31.97 15.68 -3.98 -0.06 -32.03 16 14 N -0.61 -18.09 2.78 -810.43 -2.26 -20.35 16 15 C 0.10 2.23 6.02 85.73 0.52 2.75 16 16 C -0.13 -2.08 5.94 29.92 0.18 -1.90 16 17 C -0.09 -1.54 5.12 30.51 0.16 -1.38 16 18 C 0.07 1.43 3.88 45.06 0.18 1.60 16 19 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 20 N -0.67 -11.55 6.96 -479.95 -3.34 -14.89 16 21 C 0.05 0.92 7.38 86.71 0.64 1.56 16 22 C -0.15 -3.32 6.13 32.61 0.20 -3.12 16 23 C 0.13 3.34 3.29 47.17 0.15 3.49 16 24 H 0.07 2.40 7.00 -2.38 -0.02 2.38 16 25 C -0.18 -8.01 9.88 30.60 0.30 -7.71 16 26 C -0.17 -6.55 9.75 30.60 0.30 -6.25 16 27 H 0.26 14.34 8.32 -92.70 -0.77 13.57 16 28 H 0.02 1.18 7.86 -2.39 -0.02 1.16 16 29 H 0.04 2.21 6.90 -2.38 -0.02 2.19 16 30 H 0.40 14.01 5.80 -92.71 -0.54 13.48 16 31 H 0.09 1.85 5.58 -2.39 -0.01 1.84 16 32 H 0.08 1.53 7.52 -2.39 -0.02 1.51 16 33 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.14 6.87 -2.39 -0.02 1.12 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.35 5.20 8.92 -89.69 -0.80 4.40 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 39 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.08 1.71 6.60 -2.39 -0.02 1.69 16 42 H 0.07 2.98 8.05 -2.39 -0.02 2.96 16 43 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 45 H 0.09 3.05 8.14 -2.38 -0.02 3.03 16 Total: -1.00 -66.42 349.14 -1.10 -67.52 By element: Atomic # 1 Polarization: 33.86 SS G_CDS: -0.34 Total: 33.52 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 5.17 Total: 5.08 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -7.89 Total: -118.56 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.06 Total: -32.03 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -66.42 -1.10 -67.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891870771.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.580 kcal (2) G-P(sol) polarization free energy of solvation -66.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds