Wall clock time and date at job start Tue Mar 31 2020 06:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00076 * 2 1 4 4 H 1.48503 * 109.47148 * 275.66398 * 3 2 1 5 5 H 1.48504 * 109.47151 * 35.65800 * 3 2 1 6 6 H 1.48504 * 109.47209 * 155.66109 * 3 2 1 7 7 C 1.38809 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99822 * 338.12536 * 7 2 1 9 9 N 1.36937 * 120.00326 * 158.12409 * 7 2 1 10 10 C 1.46504 * 119.99984 * 321.24428 * 9 7 2 11 11 N 1.46502 * 109.46913 * 270.00063 * 10 9 7 12 12 C 1.47056 * 125.40495 * 269.97427 * 11 10 9 13 13 C 1.54100 * 103.86263 * 179.75620 * 12 11 10 14 14 N 1.47057 * 103.86057 * 0.37240 * 13 12 11 15 15 C 1.46503 * 125.41090 * 179.87211 * 14 13 12 16 16 C 1.54961 * 110.92258 * 126.25795 * 15 14 13 17 17 C 1.54262 * 104.16098 * 156.29723 * 16 15 14 18 18 C 1.53876 * 106.63958 * 336.44170 * 17 16 15 19 19 C 1.54266 * 106.59769 * 359.97438 * 18 17 16 20 20 C 1.33943 * 125.41416 * 89.97006 * 11 10 9 21 21 O 1.21587 * 123.03985 * 0.02562 * 20 11 10 22 22 C 1.46505 * 120.00212 * 141.23707 * 9 7 2 23 23 C 1.52994 * 117.49548 * 3.21897 * 22 9 7 24 24 C 1.52995 * 117.49750 * 294.55873 * 22 9 7 25 25 H 0.97002 * 119.99952 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47416 * 149.99267 * 10 9 7 27 27 H 1.08999 * 109.46863 * 29.99358 * 10 9 7 28 28 H 1.09000 * 110.54642 * 298.59377 * 12 11 10 29 29 H 1.08998 * 110.55081 * 61.25768 * 12 11 10 30 30 H 1.08998 * 110.66135 * 241.72421 * 13 12 11 31 31 H 1.08996 * 110.44354 * 118.90936 * 13 12 11 32 32 H 1.08996 * 110.67159 * 2.95327 * 15 14 13 33 33 H 1.09010 * 110.48015 * 37.64329 * 16 15 14 34 34 H 1.09003 * 110.53107 * 274.97271 * 16 15 14 35 35 H 1.09007 * 110.03638 * 217.13852 * 17 16 15 36 36 H 1.09002 * 110.03706 * 95.75444 * 17 16 15 37 37 H 1.09011 * 110.02894 * 119.26133 * 18 17 16 38 38 H 1.08995 * 110.03972 * 240.64063 * 18 17 16 39 39 H 1.08995 * 110.48787 * 142.28349 * 19 18 17 40 40 H 1.09002 * 110.48434 * 264.79497 * 19 18 17 41 41 H 1.09000 * 115.54630 * 148.88581 * 22 9 7 42 42 H 1.09006 * 117.50332 * 359.97438 * 23 22 9 43 43 H 1.08997 * 117.50078 * 145.02306 * 23 22 9 44 44 H 1.09005 * 117.49640 * 214.97498 * 24 22 9 45 45 H 1.08996 * 117.50187 * 359.97161 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3780 2.1155 -1.3933 5 1 1.5125 2.6152 0.8162 6 1 3.6024 1.4086 0.5770 7 6 2.0102 -1.2021 0.0005 8 1 1.5285 -2.1036 0.3494 9 7 3.3056 -1.2451 -0.4413 10 6 3.7115 -0.4449 -1.5994 11 7 3.5261 -1.2283 -2.8234 12 6 4.5360 -2.1049 -3.4350 13 6 3.8248 -2.6775 -4.6764 14 7 2.4928 -2.0556 -4.6375 15 6 1.4241 -2.2762 -5.6149 16 6 0.1146 -2.7168 -4.9132 17 6 -0.9975 -2.3204 -5.9061 18 6 -0.4236 -1.1943 -6.7838 19 6 1.0176 -0.9445 -6.2936 20 6 2.4099 -1.2600 -3.5631 21 8 1.4119 -0.6237 -3.2847 22 6 4.2857 -2.0912 0.2442 23 6 3.7839 -2.9597 1.3994 24 6 4.6466 -1.7282 1.6860 25 1 -0.4850 0.8401 -0.0004 26 1 4.7612 -0.1685 -1.5003 27 1 3.1015 0.4571 -1.6495 28 1 5.4161 -1.5307 -3.7246 29 1 4.8120 -2.9067 -2.7502 30 1 3.7429 -3.7622 -4.6065 31 1 4.3545 -2.3906 -5.5848 32 1 1.7291 -3.0118 -6.3592 33 1 -0.0096 -2.1858 -3.9693 34 1 0.1129 -3.7944 -4.7489 35 1 -1.8722 -1.9618 -5.3634 36 1 -1.2675 -3.1758 -6.5254 37 1 -0.4143 -1.5036 -7.8290 38 1 -1.0203 -0.2895 -6.6678 39 1 1.6751 -0.7295 -7.1359 40 1 1.0395 -0.1253 -5.5749 41 1 5.0767 -2.4988 -0.3853 42 1 2.7245 -2.9014 1.6497 43 1 4.2450 -3.9387 1.5303 44 1 5.6750 -1.8975 2.0053 45 1 4.1552 -0.8597 2.1244 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902077389.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:52 Heat of formation + Delta-G solvation = 49.719857 kcal Electronic energy + Delta-G solvation = -25477.825395 eV Core-core repulsion = 22111.806722 eV Total energy + Delta-G solvation = -3366.018673 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.42790 -37.65546 -36.94145 -35.38947 -33.99416 -32.42784 -30.79711 -28.70465 -28.39709 -27.08408 -25.34400 -23.84811 -22.19476 -21.57616 -21.11741 -20.03297 -19.66442 -18.61684 -17.02889 -16.33694 -15.86131 -15.73829 -15.42904 -15.17541 -14.62466 -14.20545 -13.75423 -13.56040 -13.23191 -13.16613 -12.91791 -12.67086 -12.36401 -12.10821 -11.94128 -11.83417 -11.52875 -11.07391 -11.02051 -10.95772 -10.83629 -10.80923 -10.60213 -10.46670 -10.12965 -10.06427 -9.92871 -9.55008 -9.45253 -8.91902 -8.43675 -8.20574 -7.78386 -6.84381 -5.90156 -3.36854 3.06323 3.38509 3.49035 3.51918 4.02870 4.34142 4.58668 4.77327 4.83144 4.84655 4.89233 4.91694 5.11132 5.26425 5.30161 5.42942 5.52250 5.64112 5.72111 5.73211 5.76592 5.80490 5.84006 5.90060 5.93390 6.01976 6.04519 6.08068 6.15539 6.25816 6.39523 6.39946 6.44331 6.45758 6.54631 6.73402 6.89677 6.97273 7.10480 7.41015 7.62874 8.09984 8.40446 8.51192 8.98332 9.53134 9.76672 10.08228 11.24380 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016552 B = 0.006271 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.227371 B = 4463.802393 C = 5211.032109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.066 3.934 3 Si 0.862 3.138 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.267 1.267 7 C -0.282 4.282 8 H 0.078 0.922 9 N -0.557 5.557 10 C 0.375 3.625 11 N -0.635 5.635 12 C 0.091 3.909 13 C 0.099 3.901 14 N -0.640 5.640 15 C 0.183 3.817 16 C -0.142 4.142 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.137 4.137 20 C 0.695 3.305 21 O -0.548 6.548 22 C 0.113 3.887 23 C -0.186 4.186 24 C -0.218 4.218 25 H 0.263 0.737 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.487 -5.865 -11.814 15.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.138 4.138 3 Si 0.692 3.308 4 H -0.209 1.209 5 H -0.226 1.226 6 H -0.192 1.192 7 C -0.411 4.411 8 H 0.095 0.905 9 N -0.276 5.276 10 C 0.169 3.831 11 N -0.379 5.379 12 C -0.034 4.034 13 C -0.025 4.025 14 N -0.380 5.380 15 C 0.079 3.921 16 C -0.180 4.180 17 C -0.156 4.156 18 C -0.156 4.156 19 C -0.176 4.176 20 C 0.396 3.604 21 O -0.422 6.422 22 C 0.005 3.995 23 C -0.224 4.224 24 C -0.259 4.259 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.122 0.878 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.670 -5.317 -11.570 14.864 hybrid contribution 0.542 0.691 0.000 0.878 sum 8.212 -4.626 -11.569 14.922 Atomic orbital electron populations 1.69828 1.06028 1.26621 1.48988 1.25283 0.94826 0.97301 0.96363 0.87122 0.80827 0.85676 0.77169 1.20889 1.22635 1.19163 1.18496 0.85708 0.94363 1.42486 0.90498 1.44377 1.07364 1.49674 1.26170 1.21439 0.97321 0.89769 0.74612 1.49356 1.12996 1.48573 1.27024 1.22189 0.92993 0.94611 0.93580 1.22180 0.84249 0.98013 0.98067 1.47353 1.13781 1.49344 1.27518 1.21607 0.85733 0.96333 0.88422 1.22803 0.93304 1.00743 1.01169 1.22006 0.98613 0.97711 0.97274 1.22007 0.96090 0.98952 0.98514 1.22734 0.95749 0.99096 0.99989 1.16080 0.84262 0.80436 0.79590 1.90985 1.30936 1.47664 1.72629 1.21213 0.94242 0.97350 0.86687 1.23058 1.01130 0.93353 1.04839 1.23359 0.98446 0.99840 1.04238 0.92710 0.92019 0.89936 0.91377 0.91187 0.91277 0.91356 0.89630 0.88289 0.92270 0.91658 0.92419 0.92351 0.91845 0.92337 0.89769 0.89321 0.87793 0.90578 0.90738 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.75 13.97 55.49 0.78 -26.98 16 2 C 0.07 1.96 5.30 -17.43 -0.09 1.86 16 3 Si 0.86 22.67 25.06 -169.99 -4.26 18.41 16 4 H -0.28 -7.48 6.69 56.52 0.38 -7.10 16 5 H -0.30 -7.94 7.11 56.52 0.40 -7.53 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.28 -7.97 8.95 -15.06 -0.13 -8.11 16 8 H 0.08 2.39 6.87 -52.49 -0.36 2.03 16 9 N -0.56 -13.19 2.63 -169.35 -0.45 -13.63 16 10 C 0.38 8.32 5.40 -63.74 -0.34 7.97 16 11 N -0.64 -12.77 3.20 -182.54 -0.58 -13.35 16 12 C 0.09 1.29 7.68 -3.16 -0.02 1.26 16 13 C 0.10 1.26 7.67 -3.16 -0.02 1.24 16 14 N -0.64 -10.92 2.97 -168.88 -0.50 -11.42 16 15 C 0.18 2.75 3.61 -65.90 -0.24 2.51 16 16 C -0.14 -2.36 6.32 -25.04 -0.16 -2.52 16 17 C -0.12 -1.63 6.80 -25.61 -0.17 -1.81 16 18 C -0.12 -1.54 6.80 -25.61 -0.17 -1.71 16 19 C -0.14 -2.04 6.35 -25.07 -0.16 -2.20 16 20 C 0.69 15.25 7.61 -88.40 -0.67 14.58 16 21 O -0.55 -14.74 14.27 5.29 0.08 -14.66 16 22 C 0.11 2.24 6.56 -67.93 -0.45 1.79 16 23 C -0.19 -3.53 9.80 -26.70 -0.26 -3.79 16 24 C -0.22 -4.06 10.36 -26.70 -0.28 -4.33 16 25 H 0.26 7.99 8.31 -40.82 -0.34 7.66 16 26 H 0.06 1.16 8.07 -51.93 -0.42 0.75 16 27 H 0.08 2.11 3.17 -51.93 -0.16 1.95 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.03 8.13 -51.93 -0.42 0.61 16 33 H 0.10 2.19 6.17 -51.92 -0.32 1.87 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.96 8.14 -51.92 -0.42 0.53 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.08 1.59 6.68 -51.93 -0.35 1.24 16 41 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.10 2.28 6.45 -51.93 -0.33 1.95 16 43 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 45 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 LS Contribution 350.07 15.07 5.28 5.28 Total: -1.00 -34.32 350.07 -10.29 -44.61 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -7.45 Total: 4.99 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: -3.18 Total: 6.76 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: -0.76 Total: -65.38 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.08 Total: -14.66 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.26 Total: 18.41 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.32 -10.29 -44.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902077389.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.329 kcal (2) G-P(sol) polarization free energy of solvation -34.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds