Wall clock time and date at job start Tue Mar 31 2020 06:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00076 * 2 1 4 4 H 1.48503 * 109.47148 * 275.66398 * 3 2 1 5 5 H 1.48504 * 109.47151 * 35.65800 * 3 2 1 6 6 H 1.48504 * 109.47209 * 155.66109 * 3 2 1 7 7 C 1.38809 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99822 * 338.12536 * 7 2 1 9 9 N 1.36937 * 120.00326 * 158.12409 * 7 2 1 10 10 C 1.46504 * 119.99984 * 321.24428 * 9 7 2 11 11 N 1.46502 * 109.46913 * 270.00063 * 10 9 7 12 12 C 1.47056 * 125.40495 * 269.97427 * 11 10 9 13 13 C 1.54100 * 103.86263 * 179.75620 * 12 11 10 14 14 N 1.47057 * 103.86057 * 0.37240 * 13 12 11 15 15 C 1.46503 * 125.41090 * 179.87211 * 14 13 12 16 16 C 1.54961 * 110.92258 * 126.25795 * 15 14 13 17 17 C 1.54262 * 104.16098 * 156.29723 * 16 15 14 18 18 C 1.53876 * 106.63958 * 336.44170 * 17 16 15 19 19 C 1.54266 * 106.59769 * 359.97438 * 18 17 16 20 20 C 1.33943 * 125.41416 * 89.97006 * 11 10 9 21 21 O 1.21587 * 123.03985 * 0.02562 * 20 11 10 22 22 C 1.46505 * 120.00212 * 141.23707 * 9 7 2 23 23 C 1.52994 * 117.49548 * 3.21897 * 22 9 7 24 24 C 1.52995 * 117.49750 * 294.55873 * 22 9 7 25 25 H 0.97002 * 119.99952 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47416 * 149.99267 * 10 9 7 27 27 H 1.08999 * 109.46863 * 29.99358 * 10 9 7 28 28 H 1.09000 * 110.54642 * 298.59377 * 12 11 10 29 29 H 1.08998 * 110.55081 * 61.25768 * 12 11 10 30 30 H 1.08998 * 110.66135 * 241.72421 * 13 12 11 31 31 H 1.08996 * 110.44354 * 118.90936 * 13 12 11 32 32 H 1.08996 * 110.67159 * 2.95327 * 15 14 13 33 33 H 1.09010 * 110.48015 * 37.64329 * 16 15 14 34 34 H 1.09003 * 110.53107 * 274.97271 * 16 15 14 35 35 H 1.09007 * 110.03638 * 217.13852 * 17 16 15 36 36 H 1.09002 * 110.03706 * 95.75444 * 17 16 15 37 37 H 1.09011 * 110.02894 * 119.26133 * 18 17 16 38 38 H 1.08995 * 110.03972 * 240.64063 * 18 17 16 39 39 H 1.08995 * 110.48787 * 142.28349 * 19 18 17 40 40 H 1.09002 * 110.48434 * 264.79497 * 19 18 17 41 41 H 1.09000 * 115.54630 * 148.88581 * 22 9 7 42 42 H 1.09006 * 117.50332 * 359.97438 * 23 22 9 43 43 H 1.08997 * 117.50078 * 145.02306 * 23 22 9 44 44 H 1.09005 * 117.49640 * 214.97498 * 24 22 9 45 45 H 1.08996 * 117.50187 * 359.97161 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3780 2.1155 -1.3933 5 1 1.5125 2.6152 0.8162 6 1 3.6024 1.4086 0.5770 7 6 2.0102 -1.2021 0.0005 8 1 1.5285 -2.1036 0.3494 9 7 3.3056 -1.2451 -0.4413 10 6 3.7115 -0.4449 -1.5994 11 7 3.5261 -1.2283 -2.8234 12 6 4.5360 -2.1049 -3.4350 13 6 3.8248 -2.6775 -4.6764 14 7 2.4928 -2.0556 -4.6375 15 6 1.4241 -2.2762 -5.6149 16 6 0.1146 -2.7168 -4.9132 17 6 -0.9975 -2.3204 -5.9061 18 6 -0.4236 -1.1943 -6.7838 19 6 1.0176 -0.9445 -6.2936 20 6 2.4099 -1.2600 -3.5631 21 8 1.4119 -0.6237 -3.2847 22 6 4.2857 -2.0912 0.2442 23 6 3.7839 -2.9597 1.3994 24 6 4.6466 -1.7282 1.6860 25 1 -0.4850 0.8401 -0.0004 26 1 4.7612 -0.1685 -1.5003 27 1 3.1015 0.4571 -1.6495 28 1 5.4161 -1.5307 -3.7246 29 1 4.8120 -2.9067 -2.7502 30 1 3.7429 -3.7622 -4.6065 31 1 4.3545 -2.3906 -5.5848 32 1 1.7291 -3.0118 -6.3592 33 1 -0.0096 -2.1858 -3.9693 34 1 0.1129 -3.7944 -4.7489 35 1 -1.8722 -1.9618 -5.3634 36 1 -1.2675 -3.1758 -6.5254 37 1 -0.4143 -1.5036 -7.8290 38 1 -1.0203 -0.2895 -6.6678 39 1 1.6751 -0.7295 -7.1359 40 1 1.0395 -0.1253 -5.5749 41 1 5.0767 -2.4988 -0.3853 42 1 2.7245 -2.9014 1.6497 43 1 4.2450 -3.9387 1.5303 44 1 5.6750 -1.8975 2.0053 45 1 4.1552 -0.8597 2.1244 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902077389.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:52 Heat of formation + Delta-G solvation = 26.693171 kcal Electronic energy + Delta-G solvation = -25478.823907 eV Core-core repulsion = 22111.806722 eV Total energy + Delta-G solvation = -3367.017185 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.85504 -39.11177 -38.39933 -37.02514 -35.59542 -34.27150 -32.63082 -30.04514 -29.61362 -28.38797 -27.13200 -25.64080 -23.42722 -23.07756 -22.51415 -21.43486 -21.18017 -20.11434 -18.80296 -17.84792 -17.42290 -17.37992 -16.75123 -16.67015 -16.27826 -15.56956 -15.48253 -15.04322 -14.65664 -14.57751 -14.36497 -14.29858 -14.19265 -13.72255 -13.33208 -13.13498 -12.92939 -12.73504 -12.67480 -12.22187 -12.14695 -12.08330 -12.02102 -11.95669 -11.88917 -11.79647 -11.43780 -11.26973 -11.02008 -10.64744 -10.58585 -9.80238 -9.12155 -8.77751 -8.18497 -5.60527 1.25040 1.29911 1.40715 1.69944 2.40411 2.43491 2.98621 3.10933 3.26389 3.40346 3.69547 3.71018 3.75586 3.96558 4.05500 4.23336 4.29572 4.32730 4.36869 4.44104 4.50380 4.53999 4.61737 4.65590 4.67118 4.72448 4.78562 4.91267 4.94479 4.99995 5.04498 5.10194 5.12126 5.18484 5.30204 5.31957 5.51963 5.55380 5.62109 5.91014 6.07155 6.11547 6.22078 6.93422 7.01325 7.61344 7.94175 7.97515 9.00648 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016552 B = 0.006271 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.227371 B = 4463.802393 C = 5211.032109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.005 3.995 3 Si 0.929 3.071 4 H -0.292 1.292 5 H -0.308 1.308 6 H -0.237 1.237 7 C -0.253 4.253 8 H 0.031 0.969 9 N -0.573 5.573 10 C 0.375 3.625 11 N -0.645 5.645 12 C 0.087 3.913 13 C 0.098 3.902 14 N -0.638 5.638 15 C 0.181 3.819 16 C -0.145 4.145 17 C -0.115 4.115 18 C -0.113 4.113 19 C -0.134 4.134 20 C 0.679 3.321 21 O -0.615 6.615 22 C 0.102 3.898 23 C -0.190 4.190 24 C -0.202 4.202 25 H 0.256 0.744 26 H 0.107 0.893 27 H 0.041 0.959 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.136 0.864 33 H 0.030 0.970 34 H 0.069 0.931 35 H 0.042 0.958 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.049 0.951 39 H 0.088 0.912 40 H 0.031 0.969 41 H 0.133 0.867 42 H 0.059 0.941 43 H 0.113 0.887 44 H 0.118 0.882 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.078 -7.808 -14.505 21.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.193 4.193 3 Si 0.758 3.242 4 H -0.221 1.221 5 H -0.237 1.237 6 H -0.160 1.160 7 C -0.383 4.383 8 H 0.048 0.952 9 N -0.294 5.294 10 C 0.168 3.832 11 N -0.388 5.388 12 C -0.035 4.035 13 C -0.024 4.024 14 N -0.377 5.377 15 C 0.079 3.921 16 C -0.183 4.183 17 C -0.153 4.153 18 C -0.151 4.151 19 C -0.173 4.173 20 C 0.380 3.620 21 O -0.494 6.494 22 C -0.005 4.005 23 C -0.228 4.228 24 C -0.242 4.242 25 H 0.064 0.936 26 H 0.125 0.875 27 H 0.059 0.941 28 H 0.122 0.878 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.126 0.874 32 H 0.154 0.846 33 H 0.049 0.951 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.049 0.951 41 H 0.150 0.850 42 H 0.078 0.922 43 H 0.131 0.869 44 H 0.136 0.864 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.369 -7.320 -14.295 20.271 hybrid contribution -0.848 1.125 0.787 1.614 sum 11.520 -6.195 -13.508 18.803 Atomic orbital electron populations 1.69994 1.08002 1.26731 1.53094 1.25904 0.95284 1.00834 0.97280 0.86060 0.80663 0.81224 0.76240 1.22079 1.23702 1.15961 1.18206 0.87742 0.92230 1.40109 0.95180 1.44419 1.06349 1.50848 1.27738 1.21218 0.98610 0.88482 0.74895 1.48991 1.14143 1.49268 1.26386 1.22602 0.92574 0.94374 0.93997 1.22573 0.81706 0.99005 0.99140 1.47424 1.15953 1.48136 1.26150 1.21903 0.84489 0.97326 0.88416 1.22722 0.96192 1.00359 0.99072 1.22015 0.96840 0.99390 0.97009 1.22023 0.94578 0.98101 1.00376 1.22676 0.97663 0.97364 0.99606 1.16526 0.83834 0.80730 0.80926 1.90950 1.33545 1.50385 1.74479 1.21585 0.94339 0.96992 0.87533 1.23016 0.99190 0.95633 1.04986 1.23348 1.00128 0.98090 1.02629 0.93557 0.87529 0.94094 0.87758 0.89919 0.89041 0.87368 0.84627 0.95113 0.91262 0.93926 0.88775 0.88322 0.93211 0.89349 0.95053 0.85007 0.92219 0.86860 0.86355 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -64.41 13.97 21.65 0.30 -64.10 16 2 C 0.01 0.32 5.30 84.86 0.45 0.77 16 3 Si 0.93 49.81 25.06 68.60 1.72 51.53 16 4 H -0.29 -16.02 6.69 99.48 0.67 -15.36 16 5 H -0.31 -16.71 7.11 99.48 0.71 -16.01 16 6 H -0.24 -11.28 7.11 99.48 0.71 -10.58 16 7 C -0.25 -15.08 8.95 84.03 0.75 -14.33 16 8 H 0.03 2.05 6.87 -2.91 -0.02 2.03 16 9 N -0.57 -27.01 2.63 -689.69 -1.81 -28.82 16 10 C 0.37 16.22 5.40 170.96 0.92 17.14 16 11 N -0.65 -25.04 3.20 -850.18 -2.72 -27.76 16 12 C 0.09 2.05 7.68 86.65 0.67 2.72 16 13 C 0.10 2.01 7.67 86.65 0.66 2.68 16 14 N -0.64 -20.70 2.97 -806.94 -2.40 -23.09 16 15 C 0.18 5.11 3.61 46.31 0.17 5.27 16 16 C -0.14 -4.94 6.32 31.69 0.20 -4.74 16 17 C -0.11 -3.15 6.80 31.32 0.21 -2.94 16 18 C -0.11 -2.81 6.80 31.32 0.21 -2.60 16 19 C -0.13 -3.88 6.35 31.67 0.20 -3.68 16 20 C 0.68 30.33 7.61 179.57 1.37 31.70 16 21 O -0.61 -35.62 14.27 -3.99 -0.06 -35.68 16 22 C 0.10 3.75 6.56 44.99 0.30 4.05 16 23 C -0.19 -6.98 9.80 30.62 0.30 -6.68 16 24 C -0.20 -6.93 10.36 30.62 0.32 -6.61 16 25 H 0.26 16.99 8.31 -92.71 -0.77 16.22 16 26 H 0.11 3.62 8.07 -2.39 -0.02 3.60 16 27 H 0.04 2.14 3.17 -2.39 -0.01 2.13 16 28 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.14 2.54 8.13 -2.39 -0.02 2.52 16 33 H 0.03 1.48 6.17 -2.38 -0.01 1.46 16 34 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.03 1.24 6.68 -2.39 -0.02 1.22 16 41 H 0.13 3.73 8.14 -2.39 -0.02 3.71 16 42 H 0.06 2.74 6.45 -2.38 -0.02 2.72 16 43 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 44 H 0.12 3.07 8.14 -2.38 -0.02 3.05 16 45 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -88.72 350.07 2.69 -86.03 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.92 Total: 19.14 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: 6.73 Total: 22.76 kcal Atomic # 7 Polarization: -137.15 SS G_CDS: -6.63 Total: -143.78 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -0.06 Total: -35.68 kcal Atomic # 14 Polarization: 49.81 SS G_CDS: 1.72 Total: 51.53 kcal Total: -88.72 2.69 -86.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902077389.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.725 kcal (2) G-P(sol) polarization free energy of solvation -88.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds