Wall clock time and date at job start Tue Mar 31 2020 06:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00226 * 2 1 4 4 C 1.52996 * 109.47409 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.47068 * 67.26141 * 4 3 2 6 6 C 1.46898 * 110.99851 * 293.72669 * 5 4 3 7 7 C 1.52995 * 109.47379 * 300.41333 * 6 5 4 8 8 C 1.50696 * 109.47129 * 185.49179 * 7 6 5 9 9 C 1.38237 * 120.00129 * 269.72663 * 8 7 6 10 10 C 1.38232 * 120.00235 * 179.76855 * 9 8 7 11 11 C 1.38241 * 119.99601 * 0.50102 * 10 9 8 12 12 C 1.38229 * 120.00310 * 359.75412 * 11 10 9 13 13 C 1.38235 * 119.99880 * 359.97438 * 12 11 10 14 14 C 1.46902 * 110.99838 * 57.68392 * 5 4 3 15 15 C 1.52996 * 109.47543 * 77.91863 * 14 5 4 16 16 H 1.09000 * 109.46688 * 54.04611 * 15 14 5 17 17 O 1.42901 * 109.47084 * 294.05197 * 15 14 5 18 18 C 1.50693 * 109.47243 * 174.04663 * 15 14 5 19 19 H 1.08001 * 120.00313 * 0.02562 * 18 15 14 20 20 C 1.37878 * 120.00174 * 179.97438 * 18 15 14 21 21 N 1.31518 * 120.00022 * 0.02562 * 20 18 15 22 22 Si 1.86795 * 120.00333 * 180.02562 * 20 18 15 23 23 H 1.48506 * 109.46996 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47169 * 120.00332 * 22 20 18 25 25 H 1.48496 * 109.47424 * 240.00143 * 22 20 18 26 26 H 1.09005 * 109.46819 * 60.00055 * 1 2 3 27 27 H 1.08997 * 109.47342 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47022 * 300.00121 * 1 2 3 29 29 H 1.09002 * 109.47236 * 59.99957 * 3 2 1 30 30 H 1.09002 * 109.47278 * 300.00238 * 3 2 1 31 31 H 1.09003 * 109.47178 * 307.26333 * 4 3 2 32 32 H 1.09001 * 109.47097 * 187.26330 * 4 3 2 33 33 H 1.09000 * 109.46913 * 60.42035 * 6 5 4 34 34 H 1.08999 * 109.46864 * 180.41049 * 6 5 4 35 35 H 1.09009 * 109.47012 * 305.48908 * 7 6 5 36 36 H 1.08997 * 109.47273 * 65.49013 * 7 6 5 37 37 H 1.08004 * 119.99628 * 359.97438 * 9 8 7 38 38 H 1.07997 * 120.00264 * 180.23281 * 10 9 8 39 39 H 1.08005 * 119.99628 * 179.72251 * 11 10 9 40 40 H 1.08003 * 120.00567 * 179.97438 * 12 11 10 41 41 H 1.07999 * 119.99980 * 179.97438 * 13 12 11 42 42 H 1.09004 * 109.47083 * 317.92004 * 14 5 4 43 43 H 1.09000 * 109.46890 * 197.92602 * 14 5 4 44 44 H 0.96700 * 113.99999 * 299.99675 * 17 15 14 45 45 H 0.96994 * 120.00569 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9819 0.6120 -1.2765 6 6 3.5260 -0.7772 -1.4185 7 6 4.0884 -1.6183 -0.2709 8 6 3.7337 -3.0666 -0.4889 9 6 2.5573 -3.5757 0.0287 10 6 2.2296 -4.9030 -0.1754 11 6 3.0833 -5.7239 -0.8884 12 6 4.2622 -5.2163 -1.4015 13 6 4.5872 -3.8875 -1.2022 14 6 3.5300 1.4328 -2.4079 15 6 4.4265 2.6662 -2.5336 16 1 5.4687 2.3529 -2.5957 17 8 4.2482 3.5032 -1.3892 18 6 4.0568 3.4312 -3.7781 19 1 3.2616 3.0737 -4.4156 20 6 4.7330 4.5881 -4.1026 21 7 5.7010 5.0238 -3.3262 22 14 4.2743 5.5368 -5.6449 23 1 3.1609 4.8425 -6.3404 24 1 3.8458 6.9092 -5.2729 25 1 5.4511 5.6134 -6.5474 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6887 1.8464 0.8900 30 1 1.6887 1.8464 -0.8900 31 1 3.8483 0.5358 0.8188 32 1 3.9781 2.1722 0.1306 33 1 2.4368 -0.8067 -1.3909 34 1 3.8764 -1.1791 -2.3692 35 1 5.1726 -1.5107 -0.2388 36 1 3.6614 -1.2778 0.6724 37 1 1.8926 -2.9355 0.5898 38 1 1.3087 -5.2998 0.2258 39 1 2.8294 -6.7621 -1.0440 40 1 4.9294 -5.8577 -1.9582 41 1 5.5084 -3.4910 -1.6027 42 1 2.5001 1.7478 -2.2398 43 1 3.5857 0.8479 -3.3261 44 1 3.3422 3.8199 -1.2709 45 1 6.1770 5.8375 -3.5545 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929393256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:06 Heat of formation + Delta-G solvation = -64.127569 kcal Electronic energy + Delta-G solvation = -24218.741227 eV Core-core repulsion = 20815.493008 eV Total energy + Delta-G solvation = -3403.248219 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.42182 -38.62026 -36.65494 -35.03235 -32.82621 -32.08185 -30.83928 -29.67766 -28.92898 -27.00670 -26.03471 -24.36876 -23.25409 -22.50454 -21.65194 -20.34440 -19.46814 -17.02162 -16.69760 -16.50555 -16.30609 -15.25439 -15.17139 -14.94728 -14.60130 -14.44476 -14.35597 -14.17080 -13.42698 -13.14517 -13.06080 -12.87333 -12.71920 -12.45945 -12.05079 -11.78326 -11.64274 -11.30163 -11.09345 -11.05074 -11.01529 -10.90902 -10.72650 -10.69287 -10.55257 -10.39228 -9.99612 -9.36474 -8.97308 -8.88022 -8.62034 -8.54334 -8.08929 -7.39947 -5.98644 -4.16702 1.41408 1.44171 3.27016 3.35537 3.38522 3.82706 3.92368 4.37282 4.63165 4.91524 4.97257 5.07539 5.20464 5.27168 5.28220 5.31452 5.40875 5.50846 5.53280 5.57410 5.61527 5.63464 5.68151 5.77232 5.92967 6.04339 6.08534 6.12322 6.20359 6.32619 6.37673 6.50228 6.53006 6.54519 6.65711 6.69438 6.83651 6.95688 7.06867 7.26860 7.62992 7.79512 7.80492 8.02346 8.24396 8.87346 9.39301 9.60257 11.05258 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019502 B = 0.003672 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.425636 B = 7622.509751 C = 8292.541068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.380 6.380 3 C 0.017 3.983 4 C 0.047 3.953 5 N -0.526 5.526 6 C 0.052 3.948 7 C -0.075 4.075 8 C -0.067 4.067 9 C -0.113 4.113 10 C -0.124 4.124 11 C -0.133 4.133 12 C -0.122 4.122 13 C -0.118 4.118 14 C 0.027 3.973 15 C 0.238 3.762 16 H 0.064 0.936 17 O -0.559 6.559 18 C -0.572 4.572 19 H 0.054 0.946 20 C 0.080 3.920 21 N -0.857 5.857 22 Si 0.887 3.113 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.283 1.283 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.036 0.964 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.122 0.878 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.029 0.971 43 H 0.063 0.937 44 H 0.337 0.663 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.155 -15.919 7.780 19.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.299 6.299 3 C -0.061 4.061 4 C -0.081 4.081 5 N -0.248 5.248 6 C -0.075 4.075 7 C -0.113 4.113 8 C -0.067 4.067 9 C -0.131 4.131 10 C -0.142 4.142 11 C -0.151 4.151 12 C -0.140 4.140 13 C -0.136 4.136 14 C -0.100 4.100 15 C 0.180 3.820 16 H 0.081 0.919 17 O -0.361 6.361 18 C -0.611 4.611 19 H 0.072 0.928 20 C -0.126 4.126 21 N -0.493 5.493 22 Si 0.714 3.286 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.209 1.209 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.137 0.863 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.140 0.860 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.140 0.860 42 H 0.047 0.953 43 H 0.082 0.918 44 H 0.180 0.820 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.716 -16.075 7.863 19.113 hybrid contribution -2.036 0.826 -1.109 2.462 sum -8.752 -15.248 6.754 18.834 Atomic orbital electron populations 1.22694 0.82606 1.02007 0.99665 1.88016 1.18577 1.28410 1.94942 1.23545 0.97348 0.84689 1.00496 1.22680 0.89345 1.03323 0.92779 1.62254 1.59040 1.01194 1.02336 1.22321 0.99484 0.88743 0.96997 1.20621 1.01483 0.89464 0.99687 1.20015 0.94243 0.96062 0.96392 1.21112 0.96681 0.95171 1.00146 1.21113 0.99434 0.94164 0.99461 1.21072 0.95148 0.99538 0.99374 1.21116 0.97107 0.95621 1.00139 1.21148 0.99887 0.93640 0.98962 1.23154 0.98009 0.97163 0.91698 1.19388 0.95264 0.83634 0.83714 0.91862 1.86569 1.31114 1.69670 1.48790 1.21683 1.20022 1.09809 1.09544 0.92820 1.25019 0.94348 0.97222 0.96012 1.70090 1.21094 1.21818 1.36278 0.86656 0.78485 0.79911 0.83532 1.19808 1.20968 1.20874 0.94429 0.90273 0.94545 0.93636 0.92298 0.91145 0.86316 0.92037 0.92310 0.90879 0.90782 0.86014 0.86570 0.86639 0.86427 0.86019 0.95257 0.91850 0.81963 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.23 7.14 -35.23 -0.25 -5.48 16 3 C 0.02 0.25 5.79 37.16 0.22 0.46 16 4 C 0.05 0.76 5.36 -3.82 -0.02 0.74 16 5 N -0.53 -9.46 4.68 -234.63 -1.10 -10.56 16 6 C 0.05 0.83 4.35 -3.83 -0.02 0.81 16 7 C -0.08 -1.04 4.84 -27.89 -0.13 -1.18 16 8 C -0.07 -0.87 5.13 -104.62 -0.54 -1.40 16 9 C -0.11 -1.37 9.70 -39.58 -0.38 -1.75 16 10 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 11 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 12 C -0.12 -1.34 10.05 -39.59 -0.40 -1.74 16 13 C -0.12 -1.46 9.70 -39.58 -0.38 -1.85 16 14 C 0.03 0.55 4.61 -3.83 -0.02 0.54 16 15 C 0.24 5.90 3.05 -27.89 -0.09 5.81 16 16 H 0.06 1.79 8.14 -51.93 -0.42 1.37 16 17 O -0.56 -13.59 10.00 -35.23 -0.35 -13.94 16 18 C -0.57 -15.51 8.76 -34.44 -0.30 -15.81 16 19 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 20 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 21 N -0.86 -25.14 12.84 55.43 0.71 -24.42 16 22 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.93 5.68 -51.93 -0.29 0.63 16 31 H 0.07 1.06 6.10 -51.93 -0.32 0.75 16 32 H 0.12 2.15 5.67 -51.93 -0.29 1.85 16 33 H 0.06 1.00 5.27 -51.93 -0.27 0.73 16 34 H 0.06 0.98 7.98 -51.93 -0.41 0.56 16 35 H 0.07 1.05 8.09 -51.92 -0.42 0.63 16 36 H 0.07 1.03 6.28 -51.93 -0.33 0.70 16 37 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 39 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 40 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 41 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 42 H 0.03 0.58 5.35 -51.93 -0.28 0.31 16 43 H 0.06 1.32 7.79 -51.93 -0.40 0.92 16 44 H 0.34 7.31 9.04 45.56 0.41 7.72 16 45 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 357.65 15.07 5.39 5.39 Total: -1.00 -29.91 357.65 -8.84 -38.76 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -6.38 Total: 9.59 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -1.84 Total: -15.36 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: -0.39 Total: -34.99 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.60 Total: -19.42 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.91 -8.84 -38.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929393256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.371 kcal (2) G-P(sol) polarization free energy of solvation -29.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds