Wall clock time and date at job start Tue Mar 31 2020 06:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00226 * 2 1 4 4 C 1.52996 * 109.47409 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.47068 * 67.26141 * 4 3 2 6 6 C 1.46898 * 110.99851 * 293.72669 * 5 4 3 7 7 C 1.52995 * 109.47379 * 300.41333 * 6 5 4 8 8 C 1.50696 * 109.47129 * 185.49179 * 7 6 5 9 9 C 1.38237 * 120.00129 * 269.72663 * 8 7 6 10 10 C 1.38232 * 120.00235 * 179.76855 * 9 8 7 11 11 C 1.38241 * 119.99601 * 0.50102 * 10 9 8 12 12 C 1.38229 * 120.00310 * 359.75412 * 11 10 9 13 13 C 1.38235 * 119.99880 * 359.97438 * 12 11 10 14 14 C 1.46902 * 110.99838 * 57.68392 * 5 4 3 15 15 C 1.52996 * 109.47543 * 77.91863 * 14 5 4 16 16 H 1.09000 * 109.46688 * 54.04611 * 15 14 5 17 17 O 1.42901 * 109.47084 * 294.05197 * 15 14 5 18 18 C 1.50693 * 109.47243 * 174.04663 * 15 14 5 19 19 H 1.08001 * 120.00313 * 0.02562 * 18 15 14 20 20 C 1.37878 * 120.00174 * 179.97438 * 18 15 14 21 21 N 1.31518 * 120.00022 * 0.02562 * 20 18 15 22 22 Si 1.86795 * 120.00333 * 180.02562 * 20 18 15 23 23 H 1.48506 * 109.46996 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47169 * 120.00332 * 22 20 18 25 25 H 1.48496 * 109.47424 * 240.00143 * 22 20 18 26 26 H 1.09005 * 109.46819 * 60.00055 * 1 2 3 27 27 H 1.08997 * 109.47342 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47022 * 300.00121 * 1 2 3 29 29 H 1.09002 * 109.47236 * 59.99957 * 3 2 1 30 30 H 1.09002 * 109.47278 * 300.00238 * 3 2 1 31 31 H 1.09003 * 109.47178 * 307.26333 * 4 3 2 32 32 H 1.09001 * 109.47097 * 187.26330 * 4 3 2 33 33 H 1.09000 * 109.46913 * 60.42035 * 6 5 4 34 34 H 1.08999 * 109.46864 * 180.41049 * 6 5 4 35 35 H 1.09009 * 109.47012 * 305.48908 * 7 6 5 36 36 H 1.08997 * 109.47273 * 65.49013 * 7 6 5 37 37 H 1.08004 * 119.99628 * 359.97438 * 9 8 7 38 38 H 1.07997 * 120.00264 * 180.23281 * 10 9 8 39 39 H 1.08005 * 119.99628 * 179.72251 * 11 10 9 40 40 H 1.08003 * 120.00567 * 179.97438 * 12 11 10 41 41 H 1.07999 * 119.99980 * 179.97438 * 13 12 11 42 42 H 1.09004 * 109.47083 * 317.92004 * 14 5 4 43 43 H 1.09000 * 109.46890 * 197.92602 * 14 5 4 44 44 H 0.96700 * 113.99999 * 299.99675 * 17 15 14 45 45 H 0.96994 * 120.00569 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9819 0.6120 -1.2765 6 6 3.5260 -0.7772 -1.4185 7 6 4.0884 -1.6183 -0.2709 8 6 3.7337 -3.0666 -0.4889 9 6 2.5573 -3.5757 0.0287 10 6 2.2296 -4.9030 -0.1754 11 6 3.0833 -5.7239 -0.8884 12 6 4.2622 -5.2163 -1.4015 13 6 4.5872 -3.8875 -1.2022 14 6 3.5300 1.4328 -2.4079 15 6 4.4265 2.6662 -2.5336 16 1 5.4687 2.3529 -2.5957 17 8 4.2482 3.5032 -1.3892 18 6 4.0568 3.4312 -3.7781 19 1 3.2616 3.0737 -4.4156 20 6 4.7330 4.5881 -4.1026 21 7 5.7010 5.0238 -3.3262 22 14 4.2743 5.5368 -5.6449 23 1 3.1609 4.8425 -6.3404 24 1 3.8458 6.9092 -5.2729 25 1 5.4511 5.6134 -6.5474 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6887 1.8464 0.8900 30 1 1.6887 1.8464 -0.8900 31 1 3.8483 0.5358 0.8188 32 1 3.9781 2.1722 0.1306 33 1 2.4368 -0.8067 -1.3909 34 1 3.8764 -1.1791 -2.3692 35 1 5.1726 -1.5107 -0.2388 36 1 3.6614 -1.2778 0.6724 37 1 1.8926 -2.9355 0.5898 38 1 1.3087 -5.2998 0.2258 39 1 2.8294 -6.7621 -1.0440 40 1 4.9294 -5.8577 -1.9582 41 1 5.5084 -3.4910 -1.6027 42 1 2.5001 1.7478 -2.2398 43 1 3.5857 0.8479 -3.3261 44 1 3.3422 3.8199 -1.2709 45 1 6.1770 5.8375 -3.5545 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929393256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:05 Heat of formation + Delta-G solvation = -83.621180 kcal Electronic energy + Delta-G solvation = -24219.586533 eV Core-core repulsion = 20815.493008 eV Total energy + Delta-G solvation = -3404.093526 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.51814 -39.73364 -38.05072 -36.66465 -34.27145 -33.87657 -31.69400 -31.15885 -30.24228 -28.43442 -27.14160 -26.04232 -24.47866 -23.36938 -23.11272 -21.66959 -20.85692 -18.98647 -17.79864 -17.64104 -17.38700 -16.67044 -16.43827 -16.29989 -16.05500 -15.79547 -15.74905 -15.55957 -14.66970 -14.54298 -14.29415 -14.09963 -13.84446 -13.63509 -13.43458 -13.02456 -12.93188 -12.88090 -12.75288 -12.63531 -12.46590 -12.25682 -12.05478 -11.93363 -11.85622 -11.72356 -11.55699 -11.04437 -10.69855 -10.37843 -10.03614 -9.74804 -9.48869 -8.86628 -8.10506 -6.36247 0.52617 0.57462 1.39847 1.41648 1.53161 2.39647 2.83699 2.94869 3.14902 3.29527 3.99077 4.04603 4.13286 4.20355 4.25373 4.27238 4.33986 4.38028 4.41435 4.47926 4.55195 4.56213 4.61238 4.70639 4.73569 4.76303 4.82514 4.88703 4.98688 5.12825 5.14800 5.20617 5.27795 5.34616 5.38797 5.65185 5.66236 5.68534 5.81008 5.86516 6.07519 6.20642 6.22836 6.38163 6.42786 6.77642 7.36382 7.59111 8.93497 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019502 B = 0.003672 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.425636 B = 7622.509751 C = 8292.541068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.391 6.391 3 C 0.028 3.972 4 C 0.050 3.950 5 N -0.540 5.540 6 C 0.061 3.939 7 C -0.062 4.062 8 C -0.085 4.085 9 C -0.122 4.122 10 C -0.126 4.126 11 C -0.134 4.134 12 C -0.128 4.128 13 C -0.135 4.135 14 C 0.047 3.953 15 C 0.243 3.757 16 H 0.019 0.981 17 O -0.567 6.567 18 C -0.586 4.586 19 H 0.056 0.944 20 C 0.028 3.972 21 N -0.897 5.897 22 Si 0.957 3.043 23 H -0.265 1.265 24 H -0.278 1.278 25 H -0.281 1.281 26 H 0.034 0.966 27 H 0.097 0.903 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.126 0.874 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.137 0.863 41 H 0.119 0.881 42 H 0.039 0.961 43 H 0.054 0.946 44 H 0.349 0.651 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.065 -17.350 7.864 21.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.311 6.311 3 C -0.050 4.050 4 C -0.078 4.078 5 N -0.263 5.263 6 C -0.066 4.066 7 C -0.099 4.099 8 C -0.085 4.085 9 C -0.140 4.140 10 C -0.144 4.144 11 C -0.151 4.151 12 C -0.145 4.145 13 C -0.153 4.153 14 C -0.081 4.081 15 C 0.185 3.815 16 H 0.037 0.963 17 O -0.371 6.371 18 C -0.624 4.624 19 H 0.074 0.926 20 C -0.175 4.175 21 N -0.534 5.534 22 Si 0.782 3.218 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.206 1.206 26 H 0.053 0.947 27 H 0.115 0.885 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.144 0.856 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.155 0.845 41 H 0.137 0.863 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.194 0.806 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.646 -17.519 7.954 21.093 hybrid contribution -1.459 1.180 -1.079 2.165 sum -10.105 -16.338 6.875 20.404 Atomic orbital electron populations 1.22872 0.80854 1.03420 1.00201 1.87972 1.20384 1.27691 1.95015 1.23291 0.95876 0.85220 1.00632 1.22555 0.90904 1.02269 0.92071 1.62147 1.59841 1.02060 1.02273 1.22246 0.99529 0.87473 0.97327 1.20436 1.00576 0.90181 0.98719 1.19971 0.95308 0.95414 0.97846 1.21234 0.96366 0.96082 1.00304 1.21437 1.00358 0.93587 0.99000 1.21450 0.94527 1.00850 0.98308 1.21404 0.97833 0.95217 1.00086 1.21280 1.00029 0.94571 0.99454 1.22725 0.97341 0.95554 0.92492 1.19119 0.93694 0.85285 0.83393 0.96313 1.86516 1.32218 1.70001 1.48316 1.22055 1.19873 1.10119 1.10352 0.92609 1.25854 0.94175 0.98303 0.99152 1.70224 1.22378 1.22439 1.38348 0.85549 0.78283 0.78438 0.79501 1.18914 1.20395 1.20649 0.94732 0.88486 0.93132 0.91781 0.93728 0.89974 0.88385 0.91882 0.93578 0.91952 0.90658 0.85608 0.84124 0.83970 0.84482 0.86263 0.94319 0.92737 0.80623 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 11.01 113.37 1.25 1.69 16 2 O -0.39 -10.12 7.14 -148.98 -1.06 -11.18 16 3 C 0.03 0.77 5.79 71.98 0.42 1.19 16 4 C 0.05 1.62 5.36 86.30 0.46 2.08 16 5 N -0.54 -19.84 4.68 -896.23 -4.19 -24.03 16 6 C 0.06 1.96 4.35 86.30 0.38 2.34 16 7 C -0.06 -1.71 4.84 29.85 0.14 -1.57 16 8 C -0.08 -2.16 5.13 -19.87 -0.10 -2.26 16 9 C -0.12 -2.75 9.70 22.27 0.22 -2.53 16 10 C -0.13 -2.39 10.05 22.27 0.22 -2.16 16 11 C -0.13 -2.43 10.05 22.27 0.22 -2.20 16 12 C -0.13 -2.58 10.05 22.27 0.22 -2.36 16 13 C -0.14 -3.28 9.70 22.27 0.22 -3.06 16 14 C 0.05 1.95 4.61 86.30 0.40 2.35 16 15 C 0.24 12.46 3.05 29.84 0.09 12.55 16 16 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 17 O -0.57 -28.29 10.00 -148.98 -1.49 -29.78 16 18 C -0.59 -32.22 8.76 25.60 0.22 -31.99 16 19 H 0.06 2.98 7.74 -2.91 -0.02 2.96 16 20 C 0.03 1.55 5.40 84.65 0.46 2.01 16 21 N -0.90 -53.65 12.84 21.45 0.28 -53.38 16 22 Si 0.96 43.41 29.54 68.60 2.03 45.44 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 26 H 0.03 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.04 1.37 5.68 -2.39 -0.01 1.36 16 31 H 0.08 2.45 6.10 -2.39 -0.01 2.44 16 32 H 0.10 3.61 5.67 -2.39 -0.01 3.60 16 33 H 0.06 2.02 5.27 -2.39 -0.01 2.01 16 34 H 0.05 1.57 7.98 -2.39 -0.02 1.55 16 35 H 0.06 1.84 8.09 -2.38 -0.02 1.82 16 36 H 0.07 2.05 6.28 -2.39 -0.01 2.03 16 37 H 0.13 2.66 8.06 -2.91 -0.02 2.63 16 38 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 39 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 40 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 41 H 0.12 2.82 8.06 -2.91 -0.02 2.80 16 42 H 0.04 1.54 5.35 -2.38 -0.01 1.53 16 43 H 0.05 2.33 7.79 -2.39 -0.02 2.31 16 44 H 0.35 15.38 9.04 -74.06 -0.67 14.71 16 45 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -64.68 357.65 0.68 -64.00 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: 0.31 Total: 32.87 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: 4.82 Total: -23.95 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: -3.92 Total: -77.41 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -2.55 Total: -40.96 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -64.68 0.68 -64.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929393256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.619 kcal (2) G-P(sol) polarization free energy of solvation -64.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds