Wall clock time and date at job start Tue Mar 31 2020 06:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.47436 * 2 1 4 4 C 1.46898 * 110.99706 * 293.96413 * 3 2 1 5 5 C 1.52993 * 109.47364 * 287.67460 * 4 3 2 6 6 H 1.08997 * 109.47392 * 59.15891 * 5 4 3 7 7 O 1.42902 * 109.47353 * 299.15934 * 5 4 3 8 8 C 1.50701 * 109.47679 * 179.15969 * 5 4 3 9 9 H 1.08002 * 119.99201 * 359.72335 * 8 5 4 10 10 C 1.37871 * 120.00415 * 180.02562 * 8 5 4 11 11 N 1.31516 * 119.99795 * 359.71702 * 10 8 5 12 12 Si 1.86805 * 120.00095 * 179.72427 * 10 8 5 13 13 H 1.48504 * 109.46853 * 89.99558 * 12 10 8 14 14 H 1.48493 * 109.46838 * 209.99502 * 12 10 8 15 15 H 1.48499 * 109.46916 * 329.99796 * 12 10 8 16 16 C 1.46904 * 110.99767 * 57.91678 * 3 2 1 17 17 C 1.52991 * 109.47088 * 72.17813 * 16 3 2 18 18 H 1.08998 * 109.47529 * 54.12017 * 17 16 3 19 19 O 1.42904 * 109.47389 * 294.11734 * 17 16 3 20 20 C 1.50703 * 109.47062 * 174.12112 * 17 16 3 21 21 C 1.38234 * 120.00311 * 84.72652 * 20 17 16 22 22 C 1.38232 * 119.99997 * 179.76914 * 21 20 17 23 23 C 1.38228 * 120.00116 * 0.50076 * 22 21 20 24 24 C 1.50699 * 120.00346 * 179.72357 * 23 22 21 25 25 C 1.38236 * 119.99766 * 359.75227 * 23 22 21 26 26 C 1.38227 * 120.00392 * 359.97438 * 25 23 22 27 27 H 1.08995 * 109.46957 * 56.25635 * 1 2 3 28 28 H 1.09000 * 109.46803 * 176.25727 * 1 2 3 29 29 H 1.09003 * 109.46932 * 296.25161 * 1 2 3 30 30 H 1.09002 * 109.47278 * 239.99999 * 2 1 3 31 31 H 1.09002 * 109.47191 * 119.99975 * 2 1 3 32 32 H 1.08999 * 109.47142 * 167.67189 * 4 3 2 33 33 H 1.09006 * 109.47419 * 47.67637 * 4 3 2 34 34 H 0.96704 * 113.99715 * 300.00315 * 7 5 4 35 35 H 0.97000 * 119.99514 * 179.97438 * 11 10 8 36 36 H 1.08998 * 109.47003 * 192.17781 * 16 3 2 37 37 H 1.09002 * 109.46749 * 312.17649 * 16 3 2 38 38 H 0.96700 * 113.99909 * 300.00456 * 19 17 16 39 39 H 1.08004 * 119.99678 * 359.97438 * 21 20 17 40 40 H 1.08001 * 119.99969 * 180.22825 * 22 21 20 41 41 H 1.08997 * 109.47493 * 270.02956 * 24 23 22 42 42 H 1.09006 * 109.46961 * 30.03081 * 24 23 22 43 43 H 1.09000 * 109.47527 * 150.02097 * 24 23 22 44 44 H 1.08002 * 119.99710 * 179.97438 * 25 23 22 45 45 H 1.08000 * 120.00472 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6700 2.0669 -1.2532 5 6 2.5362 1.5208 -2.3899 6 1 2.3727 0.4477 -2.4881 7 8 3.9136 1.7681 -2.1004 8 6 2.1633 2.2057 -3.6795 9 1 1.3830 2.9524 -3.6882 10 6 2.8138 1.8747 -4.8491 11 7 3.7637 0.9652 -4.8385 12 14 2.3461 2.7182 -6.4489 13 1 3.1739 3.9384 -6.6255 14 1 2.5823 1.7912 -7.5847 15 1 0.9105 3.0955 -6.4082 16 6 1.5084 2.1241 1.1620 17 6 2.2112 1.6323 2.4288 18 1 3.2908 1.7010 2.2954 19 8 1.8477 0.2729 2.6781 20 6 1.7942 2.4863 3.5984 21 6 0.6299 2.1971 4.2851 22 6 0.2499 2.9776 5.3609 23 6 1.0289 4.0535 5.7435 24 6 0.6115 4.9081 6.9124 25 6 2.1906 4.3458 5.0536 26 6 2.5735 3.5620 3.9814 27 1 -0.3633 0.5708 -0.8545 28 1 -0.3633 -1.0255 -0.0671 29 1 -0.3633 0.4546 0.9217 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8448 3.1374 -1.1453 33 1 0.6186 1.8916 -1.4812 34 1 4.1323 2.7047 -1.9996 35 1 4.2211 0.7321 -5.6615 36 1 1.7017 3.1886 1.0293 37 1 0.4350 1.9585 1.2543 38 1 0.8990 0.1368 2.8069 39 1 0.0188 1.3593 3.9831 40 1 -0.6578 2.7494 5.8997 41 1 -0.0197 5.7236 6.5593 42 1 0.0548 4.3007 7.6262 43 1 1.4973 5.3181 7.3975 44 1 2.7990 5.1866 5.3523 45 1 3.4808 3.7906 3.4420 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929747660.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:33 Heat of formation + Delta-G solvation = -74.584163 kcal Electronic energy + Delta-G solvation = -23879.034469 eV Core-core repulsion = 20475.332817 eV Total energy + Delta-G solvation = -3403.701651 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.00758 -38.33815 -36.43620 -34.67653 -33.11570 -32.03001 -31.09076 -30.34195 -29.37790 -27.70856 -25.92281 -24.29325 -23.43947 -22.78795 -21.43102 -20.56605 -19.25858 -17.51551 -16.85311 -16.24644 -15.50276 -15.36279 -15.25027 -14.81324 -14.56686 -14.20214 -14.04060 -13.94510 -13.63512 -13.57276 -13.37200 -12.86455 -12.49213 -12.46819 -12.32241 -12.16152 -11.77418 -11.58982 -11.38712 -11.14098 -11.07479 -10.95546 -10.88948 -10.74546 -10.68216 -10.28802 -10.07137 -9.56215 -9.07838 -8.92773 -8.64154 -8.53033 -8.02917 -7.48730 -5.96141 -4.14605 1.14635 1.25129 3.29145 3.36133 3.38401 3.55261 4.26793 4.44746 4.46453 4.61715 4.67355 4.84132 4.92691 5.05471 5.22163 5.29432 5.31455 5.32119 5.35221 5.51391 5.53442 5.54508 5.65783 5.83311 5.83909 5.84140 5.91009 6.01353 6.11071 6.17541 6.25091 6.37905 6.41234 6.50606 6.53170 6.60458 6.84203 6.86011 6.91077 7.59434 7.64904 7.70899 7.83630 7.96554 8.25975 8.89703 9.51564 9.68730 11.07785 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.025433 B = 0.003163 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.664462 B = 8850.046843 C = 9260.268719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.036 3.964 3 N -0.517 5.517 4 C 0.025 3.975 5 C 0.240 3.760 6 H 0.054 0.946 7 O -0.553 6.553 8 C -0.574 4.574 9 H 0.053 0.947 10 C 0.080 3.920 11 N -0.858 5.858 12 Si 0.887 3.113 13 H -0.279 1.279 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.025 3.975 17 C 0.153 3.847 18 H 0.116 0.884 19 O -0.545 6.545 20 C -0.113 4.113 21 C -0.110 4.110 22 C -0.119 4.119 23 C -0.093 4.093 24 C -0.114 4.114 25 C -0.119 4.119 26 C -0.104 4.104 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.031 0.969 34 H 0.340 0.660 35 H 0.260 0.740 36 H 0.075 0.925 37 H 0.037 0.963 38 H 0.365 0.635 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.121 0.879 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.228 4.517 21.105 22.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.092 4.092 3 N -0.239 5.239 4 C -0.102 4.102 5 C 0.182 3.818 6 H 0.071 0.929 7 O -0.355 6.355 8 C -0.613 4.613 9 H 0.071 0.929 10 C -0.126 4.126 11 N -0.493 5.493 12 Si 0.715 3.285 13 H -0.205 1.205 14 H -0.211 1.211 15 H -0.200 1.200 16 C -0.104 4.104 17 C 0.094 3.906 18 H 0.134 0.866 19 O -0.351 6.351 20 C -0.113 4.113 21 C -0.128 4.128 22 C -0.137 4.137 23 C -0.093 4.093 24 C -0.170 4.170 25 C -0.137 4.137 26 C -0.122 4.122 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.115 0.885 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.183 0.817 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.055 0.945 38 H 0.213 0.787 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.139 0.861 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.906 3.638 20.926 22.046 hybrid contribution -1.975 1.325 -1.036 2.594 sum -7.881 4.963 19.891 21.963 Atomic orbital electron populations 1.22427 0.99734 1.01678 1.01055 1.22490 0.91607 0.90875 1.04204 1.62207 1.58348 1.01903 1.01451 1.23173 0.98908 0.97661 0.90457 1.19270 0.78594 0.96157 0.87764 0.92879 1.86574 1.28357 1.26922 1.93613 1.21670 1.21501 1.24423 0.93670 0.92905 1.25021 0.94425 0.94434 0.98757 1.70090 1.22172 1.29905 1.27156 0.86703 0.78844 0.79521 0.83454 1.20541 1.21138 1.19960 1.22808 0.96868 0.98901 0.91819 1.20926 1.00851 0.79778 0.89047 0.86597 1.86659 1.28759 1.26068 1.93599 1.20664 0.95411 0.97206 0.98059 1.20846 0.96249 0.99622 0.96053 1.20958 0.99681 0.95536 0.97548 1.19921 0.95311 0.96483 0.97582 1.20782 1.01747 0.98983 0.95511 1.21029 0.96658 0.99834 0.96157 1.21042 0.99707 0.94709 0.96763 0.92392 0.92597 0.93633 0.90559 0.88535 0.92417 0.95074 0.81696 0.93042 0.90643 0.94539 0.78749 0.86410 0.86225 0.91250 0.91675 0.91604 0.86059 0.85572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.75 9.24 37.16 0.34 -2.40 16 2 C 0.04 0.61 5.52 -3.82 -0.02 0.59 16 3 N -0.52 -9.25 4.50 -234.63 -1.06 -10.30 16 4 C 0.03 0.52 4.46 -3.83 -0.02 0.51 16 5 C 0.24 6.14 2.84 -27.89 -0.08 6.07 16 6 H 0.05 1.51 6.64 -51.93 -0.35 1.16 16 7 O -0.55 -14.66 12.61 -35.23 -0.44 -15.11 16 8 C -0.57 -15.88 8.76 -34.44 -0.30 -16.18 16 9 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 10 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 11 N -0.86 -25.68 12.83 55.43 0.71 -24.97 16 12 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 C 0.02 0.36 4.58 -3.83 -0.02 0.34 16 17 C 0.15 1.98 3.41 -27.89 -0.10 1.89 16 18 H 0.12 1.66 8.05 -51.93 -0.42 1.25 16 19 O -0.55 -7.02 10.08 -35.23 -0.36 -7.37 16 20 C -0.11 -1.30 5.00 -104.62 -0.52 -1.82 16 21 C -0.11 -1.14 9.33 -39.59 -0.37 -1.51 16 22 C -0.12 -1.14 9.70 -39.59 -0.38 -1.52 16 23 C -0.09 -0.88 5.88 -104.63 -0.62 -1.49 16 24 C -0.11 -0.77 10.01 36.01 0.36 -0.41 16 25 C -0.12 -1.17 9.70 -39.59 -0.38 -1.56 16 26 C -0.10 -1.15 9.68 -39.59 -0.38 -1.53 16 27 H 0.06 0.94 6.18 -51.93 -0.32 0.62 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.56 5.92 -51.93 -0.31 0.26 16 30 H 0.08 1.52 6.51 -51.93 -0.34 1.18 16 31 H 0.10 1.56 5.44 -51.93 -0.28 1.27 16 32 H 0.06 1.17 7.72 -51.93 -0.40 0.77 16 33 H 0.03 0.64 5.96 -51.93 -0.31 0.33 16 34 H 0.34 8.10 9.04 45.56 0.41 8.52 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.08 1.10 7.72 -51.93 -0.40 0.70 16 37 H 0.04 0.50 5.75 -51.93 -0.30 0.20 16 38 H 0.36 3.62 6.99 45.56 0.32 3.94 16 39 H 0.12 1.01 6.62 -52.48 -0.35 0.66 16 40 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 43 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 44 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 45 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -31.78 355.60 -8.92 -40.70 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -5.53 Total: 12.26 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -2.58 Total: -16.87 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: -0.34 Total: -35.27 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.80 Total: -22.48 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.78 -8.92 -40.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929747660.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.884 kcal (2) G-P(sol) polarization free energy of solvation -31.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds