Wall clock time and date at job start Tue Mar 31 2020 06:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.47436 * 2 1 4 4 C 1.46898 * 110.99706 * 293.96413 * 3 2 1 5 5 C 1.52993 * 109.47364 * 287.67460 * 4 3 2 6 6 H 1.08997 * 109.47392 * 59.15891 * 5 4 3 7 7 O 1.42902 * 109.47353 * 299.15934 * 5 4 3 8 8 C 1.50701 * 109.47679 * 179.15969 * 5 4 3 9 9 H 1.08002 * 119.99201 * 359.72335 * 8 5 4 10 10 C 1.37871 * 120.00415 * 180.02562 * 8 5 4 11 11 N 1.31516 * 119.99795 * 359.71702 * 10 8 5 12 12 Si 1.86805 * 120.00095 * 179.72427 * 10 8 5 13 13 H 1.48504 * 109.46853 * 89.99558 * 12 10 8 14 14 H 1.48493 * 109.46838 * 209.99502 * 12 10 8 15 15 H 1.48499 * 109.46916 * 329.99796 * 12 10 8 16 16 C 1.46904 * 110.99767 * 57.91678 * 3 2 1 17 17 C 1.52991 * 109.47088 * 72.17813 * 16 3 2 18 18 H 1.08998 * 109.47529 * 54.12017 * 17 16 3 19 19 O 1.42904 * 109.47389 * 294.11734 * 17 16 3 20 20 C 1.50703 * 109.47062 * 174.12112 * 17 16 3 21 21 C 1.38234 * 120.00311 * 84.72652 * 20 17 16 22 22 C 1.38232 * 119.99997 * 179.76914 * 21 20 17 23 23 C 1.38228 * 120.00116 * 0.50076 * 22 21 20 24 24 C 1.50699 * 120.00346 * 179.72357 * 23 22 21 25 25 C 1.38236 * 119.99766 * 359.75227 * 23 22 21 26 26 C 1.38227 * 120.00392 * 359.97438 * 25 23 22 27 27 H 1.08995 * 109.46957 * 56.25635 * 1 2 3 28 28 H 1.09000 * 109.46803 * 176.25727 * 1 2 3 29 29 H 1.09003 * 109.46932 * 296.25161 * 1 2 3 30 30 H 1.09002 * 109.47278 * 239.99999 * 2 1 3 31 31 H 1.09002 * 109.47191 * 119.99975 * 2 1 3 32 32 H 1.08999 * 109.47142 * 167.67189 * 4 3 2 33 33 H 1.09006 * 109.47419 * 47.67637 * 4 3 2 34 34 H 0.96704 * 113.99715 * 300.00315 * 7 5 4 35 35 H 0.97000 * 119.99514 * 179.97438 * 11 10 8 36 36 H 1.08998 * 109.47003 * 192.17781 * 16 3 2 37 37 H 1.09002 * 109.46749 * 312.17649 * 16 3 2 38 38 H 0.96700 * 113.99909 * 300.00456 * 19 17 16 39 39 H 1.08004 * 119.99678 * 359.97438 * 21 20 17 40 40 H 1.08001 * 119.99969 * 180.22825 * 22 21 20 41 41 H 1.08997 * 109.47493 * 270.02956 * 24 23 22 42 42 H 1.09006 * 109.46961 * 30.03081 * 24 23 22 43 43 H 1.09000 * 109.47527 * 150.02097 * 24 23 22 44 44 H 1.08002 * 119.99710 * 179.97438 * 25 23 22 45 45 H 1.08000 * 120.00472 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6700 2.0669 -1.2532 5 6 2.5362 1.5208 -2.3899 6 1 2.3727 0.4477 -2.4881 7 8 3.9136 1.7681 -2.1004 8 6 2.1633 2.2057 -3.6795 9 1 1.3830 2.9524 -3.6882 10 6 2.8138 1.8747 -4.8491 11 7 3.7637 0.9652 -4.8385 12 14 2.3461 2.7182 -6.4489 13 1 3.1739 3.9384 -6.6255 14 1 2.5823 1.7912 -7.5847 15 1 0.9105 3.0955 -6.4082 16 6 1.5084 2.1241 1.1620 17 6 2.2112 1.6323 2.4288 18 1 3.2908 1.7010 2.2954 19 8 1.8477 0.2729 2.6781 20 6 1.7942 2.4863 3.5984 21 6 0.6299 2.1971 4.2851 22 6 0.2499 2.9776 5.3609 23 6 1.0289 4.0535 5.7435 24 6 0.6115 4.9081 6.9124 25 6 2.1906 4.3458 5.0536 26 6 2.5735 3.5620 3.9814 27 1 -0.3633 0.5708 -0.8545 28 1 -0.3633 -1.0255 -0.0671 29 1 -0.3633 0.4546 0.9217 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8448 3.1374 -1.1453 33 1 0.6186 1.8916 -1.4812 34 1 4.1323 2.7047 -1.9996 35 1 4.2211 0.7321 -5.6615 36 1 1.7017 3.1886 1.0293 37 1 0.4350 1.9585 1.2543 38 1 0.8990 0.1368 2.8069 39 1 0.0188 1.3593 3.9831 40 1 -0.6578 2.7494 5.8997 41 1 -0.0197 5.7236 6.5593 42 1 0.0548 4.3007 7.6262 43 1 1.4973 5.3181 7.3975 44 1 2.7990 5.1866 5.3523 45 1 3.4808 3.7906 3.4420 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929747660.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:33 Heat of formation + Delta-G solvation = -97.773002 kcal Electronic energy + Delta-G solvation = -23880.040012 eV Core-core repulsion = 20475.332817 eV Total energy + Delta-G solvation = -3404.707195 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.91039 -39.53527 -37.84229 -36.39007 -34.20732 -33.89430 -31.83463 -31.50021 -30.94441 -29.03795 -27.21522 -25.88524 -24.58295 -23.60196 -22.91237 -21.49548 -20.80991 -19.07594 -18.30266 -17.35332 -16.72854 -16.64347 -16.49306 -16.21091 -15.99885 -15.81925 -15.30021 -14.90100 -14.72188 -14.61596 -14.39062 -14.26558 -14.05294 -13.64398 -13.13923 -13.12650 -12.98971 -12.87655 -12.77903 -12.73903 -12.56969 -12.47948 -12.23368 -12.01746 -11.93758 -11.81016 -11.63510 -11.06284 -10.71969 -10.65011 -10.04851 -9.82695 -9.41080 -8.93622 -8.11949 -6.38453 0.37573 0.50266 1.39841 1.40366 1.51245 2.38312 2.76817 3.08394 3.14085 3.51580 3.81747 3.90679 4.04260 4.12350 4.13747 4.19834 4.24478 4.34993 4.39000 4.49344 4.53503 4.59140 4.61639 4.64349 4.74998 4.83727 4.85078 4.92584 4.98192 5.02050 5.12289 5.20379 5.21320 5.28531 5.48469 5.50139 5.61621 5.69334 5.71076 5.78560 6.05197 6.11677 6.28196 6.38568 6.76123 6.76892 7.35904 7.65383 8.92386 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.025433 B = 0.003163 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.664462 B = 8850.046843 C = 9260.268719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.039 3.961 3 N -0.532 5.532 4 C 0.045 3.955 5 C 0.241 3.759 6 H 0.016 0.984 7 O -0.571 6.571 8 C -0.588 4.588 9 H 0.058 0.942 10 C 0.024 3.976 11 N -0.900 5.900 12 Si 0.960 3.040 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.265 1.265 16 C 0.031 3.969 17 C 0.166 3.834 18 H 0.096 0.904 19 O -0.556 6.556 20 C -0.127 4.127 21 C -0.115 4.115 22 C -0.126 4.126 23 C -0.097 4.097 24 C -0.113 4.113 25 C -0.128 4.128 26 C -0.120 4.120 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.036 0.964 31 H 0.108 0.892 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.350 0.650 35 H 0.261 0.739 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.379 0.621 39 H 0.135 0.865 40 H 0.142 0.858 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.137 0.863 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.031 5.768 22.628 25.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.088 4.088 3 N -0.254 5.254 4 C -0.083 4.083 5 C 0.183 3.817 6 H 0.033 0.967 7 O -0.374 6.374 8 C -0.626 4.626 9 H 0.076 0.924 10 C -0.178 4.178 11 N -0.537 5.537 12 Si 0.785 3.215 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.189 1.189 16 C -0.097 4.097 17 C 0.107 3.893 18 H 0.113 0.887 19 O -0.364 6.364 20 C -0.128 4.128 21 C -0.133 4.133 22 C -0.144 4.144 23 C -0.097 4.097 24 C -0.169 4.169 25 C -0.146 4.146 26 C -0.138 4.138 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.055 0.945 31 H 0.126 0.874 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.194 0.806 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.229 0.771 39 H 0.153 0.847 40 H 0.159 0.841 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.155 0.845 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.730 4.899 22.471 24.263 hybrid contribution -1.401 0.917 -1.405 2.186 sum -9.131 5.816 21.066 23.685 Atomic orbital electron populations 1.22319 0.97379 1.02669 1.01521 1.22422 0.93566 0.90135 1.02723 1.62091 1.59465 1.02447 1.01439 1.22736 0.97591 0.97666 0.90339 1.19123 0.79025 0.94114 0.89474 0.96666 1.86515 1.29202 1.27905 1.93744 1.22065 1.21393 1.24344 0.94803 0.92402 1.25919 0.94256 0.95023 1.02595 1.70241 1.23616 1.31664 1.28168 0.85553 0.78932 0.78384 0.78649 1.19721 1.20918 1.18919 1.22824 0.97731 0.98309 0.90807 1.20616 0.99519 0.80153 0.89056 0.88652 1.86619 1.30214 1.25991 1.93533 1.20517 0.96540 0.97580 0.98174 1.21089 0.95910 1.00226 0.96112 1.21281 1.00452 0.95302 0.97365 1.20312 0.94837 0.96577 0.97967 1.20834 1.02393 0.98957 0.94740 1.21279 0.97277 1.00198 0.95866 1.21196 0.99974 0.95097 0.97495 0.94327 0.91075 0.90894 0.94513 0.87437 0.91902 0.95025 0.80568 0.93053 0.90842 0.93079 0.77110 0.84738 0.84069 0.90470 0.90554 0.90816 0.84498 0.85620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.98 9.24 71.98 0.67 -4.32 16 2 C 0.04 1.34 5.52 86.30 0.48 1.82 16 3 N -0.53 -19.16 4.50 -896.24 -4.03 -23.20 16 4 C 0.04 1.86 4.46 86.30 0.38 2.25 16 5 C 0.24 12.72 2.84 29.85 0.08 12.81 16 6 H 0.02 0.93 6.64 -2.39 -0.02 0.91 16 7 O -0.57 -31.27 12.61 -148.98 -1.88 -33.14 16 8 C -0.59 -32.97 8.76 25.60 0.22 -32.75 16 9 H 0.06 3.12 7.74 -2.91 -0.02 3.09 16 10 C 0.02 1.39 5.40 84.65 0.46 1.85 16 11 N -0.90 -55.22 12.83 21.45 0.28 -54.94 16 12 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 13 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 14 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 15 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 16 C 0.03 0.88 4.58 86.30 0.40 1.27 16 17 C 0.17 4.19 3.41 29.85 0.10 4.29 16 18 H 0.10 2.79 8.05 -2.39 -0.02 2.77 16 19 O -0.56 -13.56 10.08 -148.98 -1.50 -15.06 16 20 C -0.13 -2.79 5.00 -19.86 -0.10 -2.89 16 21 C -0.12 -2.13 9.33 22.27 0.21 -1.92 16 22 C -0.13 -2.08 9.70 22.27 0.22 -1.86 16 23 C -0.10 -1.60 5.88 -19.87 -0.12 -1.71 16 24 C -0.11 -1.20 10.01 71.24 0.71 -0.49 16 25 C -0.13 -2.34 9.70 22.27 0.22 -2.12 16 26 C -0.12 -2.54 9.68 22.27 0.22 -2.33 16 27 H 0.04 1.22 6.18 -2.39 -0.01 1.20 16 28 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.07 1.60 5.92 -2.39 -0.01 1.59 16 30 H 0.04 1.54 6.51 -2.39 -0.02 1.52 16 31 H 0.11 3.44 5.44 -2.39 -0.01 3.43 16 32 H 0.06 2.53 7.72 -2.39 -0.02 2.52 16 33 H 0.03 1.31 5.96 -2.38 -0.01 1.30 16 34 H 0.35 17.13 9.04 -74.05 -0.67 16.47 16 35 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 36 H 0.07 2.09 7.72 -2.39 -0.02 2.07 16 37 H 0.05 1.28 5.75 -2.39 -0.01 1.27 16 38 H 0.38 6.60 6.99 -74.06 -0.52 6.08 16 39 H 0.13 1.91 6.62 -2.91 -0.02 1.89 16 40 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 41 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.08 0.65 8.09 -2.38 -0.02 0.63 16 43 H 0.07 0.68 8.09 -2.39 -0.02 0.66 16 44 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 45 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -69.41 355.60 -1.15 -70.56 By element: Atomic # 1 Polarization: 36.06 SS G_CDS: -0.18 Total: 35.88 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: 4.14 Total: -26.11 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -3.76 Total: -78.14 kcal Atomic # 8 Polarization: -44.83 SS G_CDS: -3.38 Total: -48.21 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -69.41 -1.15 -70.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929747660.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.213 kcal (2) G-P(sol) polarization free energy of solvation -69.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds