Wall clock time and date at job start Tue Mar 31 2020 06:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46508 * 109.47040 * 2 1 4 4 C 1.46496 * 119.99917 * 274.27219 * 3 2 1 5 5 C 1.50702 * 109.47219 * 273.83003 * 4 3 2 6 6 H 1.08002 * 119.99613 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00218 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00066 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99914 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47207 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47049 * 120.00217 * 9 7 5 12 12 H 1.48495 * 109.46866 * 239.99715 * 9 7 5 13 13 C 1.34783 * 119.99524 * 94.27164 * 3 2 1 14 14 O 1.21604 * 120.00460 * 3.94289 * 13 3 2 15 15 C 1.47383 * 119.99256 * 183.94207 * 13 3 2 16 16 C 1.47019 * 127.19594 * 318.35228 * 15 13 3 17 17 C 1.34178 * 105.95408 * 179.97438 * 16 15 13 18 18 C 1.50701 * 125.43595 * 179.97438 * 17 16 15 19 19 C 1.53003 * 109.46779 * 59.98082 * 18 17 16 20 20 C 1.52998 * 109.46983 * 179.97438 * 18 17 16 21 21 C 1.52997 * 109.47217 * 299.97911 * 18 17 16 22 22 O 1.34215 * 109.12265 * 0.02562 * 17 16 15 23 23 C 1.33646 * 110.91131 * 359.97438 * 22 17 16 24 24 C 1.50705 * 125.80098 * 180.02562 * 23 22 17 25 25 H 1.09005 * 109.47548 * 300.00243 * 1 2 3 26 26 H 1.09006 * 109.47116 * 59.99824 * 1 2 3 27 27 H 1.08998 * 109.47492 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47377 * 240.00474 * 2 1 3 29 29 H 1.08996 * 109.47048 * 119.99646 * 2 1 3 30 30 H 1.08996 * 109.47658 * 33.83200 * 4 3 2 31 31 H 1.09001 * 109.46837 * 153.83602 * 4 3 2 32 32 H 0.96998 * 120.00523 * 180.02562 * 8 7 5 33 33 H 1.07996 * 127.01860 * 0.02562 * 16 15 13 34 34 H 1.08992 * 109.47635 * 59.99879 * 19 18 17 35 35 H 1.09002 * 109.46601 * 179.97438 * 19 18 17 36 36 H 1.09001 * 109.46831 * 299.99480 * 19 18 17 37 37 H 1.09000 * 109.47381 * 60.00129 * 20 18 17 38 38 H 1.09002 * 109.47236 * 179.97438 * 20 18 17 39 39 H 1.09005 * 109.47424 * 300.00202 * 20 18 17 40 40 H 1.08998 * 109.47037 * 60.00060 * 21 18 17 41 41 H 1.09002 * 109.47141 * 180.02562 * 21 18 17 42 42 H 1.09000 * 109.46813 * 299.99667 * 21 18 17 43 43 H 1.08998 * 109.47206 * 0.02562 * 24 23 22 44 44 H 1.08999 * 109.47147 * 120.02457 * 24 23 22 45 45 H 1.09005 * 109.46454 * 240.02241 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1733 2.1034 -1.2652 5 6 3.5286 1.8035 -1.8520 6 1 4.2065 1.1408 -1.3344 7 6 3.9032 2.3749 -3.0495 8 7 3.0776 3.1813 -3.6800 9 14 5.5829 2.0025 -3.7771 10 1 6.3158 1.0732 -2.8803 11 1 5.4157 1.3742 -5.1122 12 1 6.3526 3.2647 -3.9170 13 6 2.3249 1.9876 1.1641 14 8 2.2649 1.3662 2.2076 15 6 2.7328 3.4038 1.1720 16 6 3.6324 4.0750 0.2224 17 6 3.7069 5.3527 0.6250 18 6 4.5177 6.4334 -0.0427 19 6 4.0425 6.6090 -1.4864 20 6 4.3375 7.7491 0.7171 21 6 5.9960 6.0392 -0.0366 22 8 2.9448 5.5145 1.7180 23 6 2.3545 4.3659 2.0621 24 6 1.4280 4.1674 3.2340 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.3975 1.7863 -1.9620 31 1 2.0844 3.1748 -1.0853 32 1 3.3409 3.5831 -4.5226 33 1 4.1307 3.6304 -0.6263 34 1 2.9894 6.8898 -1.4908 35 1 4.6287 7.3909 -1.9692 36 1 4.1709 5.6716 -2.0276 37 1 4.6759 7.6241 1.7456 38 1 4.9243 8.5307 0.2344 39 1 3.2843 8.0300 0.7127 40 1 6.1243 5.1018 -0.5779 41 1 6.5825 6.8210 -0.5191 42 1 6.3344 5.9141 0.9920 43 1 1.3083 5.1110 3.7664 44 1 0.4566 3.8268 2.8756 45 1 1.8490 3.4209 3.9075 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930463919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:26 Heat of formation + Delta-G solvation = -44.668146 kcal Electronic energy + Delta-G solvation = -25262.013509 eV Core-core repulsion = 21859.609113 eV Total energy + Delta-G solvation = -3402.404395 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.01176 -38.76617 -36.61892 -35.15410 -33.01018 -32.34548 -31.02184 -30.07873 -27.23968 -27.03753 -26.93046 -26.07927 -23.50353 -23.05062 -21.47666 -20.63055 -19.43123 -17.39856 -16.57365 -16.32823 -15.84484 -15.45312 -15.24429 -14.47068 -14.19295 -14.09221 -13.76180 -13.64819 -13.21306 -12.90695 -12.66251 -12.63262 -12.46899 -12.27665 -12.05293 -11.97492 -11.85797 -11.58361 -11.46422 -11.39615 -11.13962 -10.94685 -10.84973 -10.79470 -10.75256 -10.46189 -10.45325 -10.11805 -9.73154 -9.17884 -8.85349 -8.50896 -7.80133 -7.61109 -6.19169 -4.25722 2.08287 2.86881 3.17748 3.26347 3.27772 3.32578 3.83601 4.07921 4.32953 4.81811 5.07760 5.11742 5.18301 5.30398 5.43100 5.49885 5.69858 5.74546 5.78079 5.81784 5.85800 5.88574 5.92176 5.96948 5.97384 6.08650 6.11933 6.20856 6.27111 6.29717 6.38269 6.45553 6.49988 6.65482 6.66493 6.70768 6.77969 6.85404 7.26198 7.30354 7.60967 7.75705 7.76244 8.08161 8.39347 8.80818 9.07771 9.39805 10.86210 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.009988 B = 0.009015 C = 0.005286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.732690 B = 3105.088099 C = 5295.566406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.114 3.886 3 N -0.587 5.587 4 C 0.232 3.768 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.885 3.115 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.280 1.280 13 C 0.588 3.412 14 O -0.576 6.576 15 C -0.216 4.216 16 C -0.142 4.142 17 C -0.031 4.031 18 C 0.022 3.978 19 C -0.140 4.140 20 C -0.139 4.139 21 C -0.140 4.140 22 O -0.178 6.178 23 C 0.032 3.968 24 C -0.067 4.067 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.031 0.969 31 H 0.050 0.950 32 H 0.264 0.736 33 H 0.183 0.817 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.441 5.890 6.223 8.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.010 4.010 3 N -0.317 5.317 4 C 0.113 3.887 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.521 5.521 9 Si 0.713 3.287 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.206 1.206 13 C 0.377 3.623 14 O -0.459 6.459 15 C -0.220 4.220 16 C -0.161 4.161 17 C -0.079 4.079 18 C 0.022 3.978 19 C -0.197 4.197 20 C -0.197 4.197 21 C -0.197 4.197 22 O -0.076 6.076 23 C -0.021 4.021 24 C -0.123 4.123 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.200 0.800 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.529 5.941 6.683 8.958 hybrid contribution 0.892 -0.356 -0.878 1.301 sum 0.363 5.585 5.806 8.064 Atomic orbital electron populations 1.22106 0.96890 1.01179 1.01882 1.21239 0.93336 0.83779 1.02602 1.48088 1.62227 1.13380 1.07982 1.19587 0.96918 0.93214 0.79017 1.21515 1.00868 1.28827 1.05944 0.92095 1.24897 0.97241 0.94934 0.96469 1.69943 1.35456 1.30265 1.16465 0.86625 0.84274 0.78526 0.79311 1.19604 1.20825 1.20601 1.17315 0.76363 0.85190 0.83402 1.90652 1.56494 1.66256 1.32460 1.21128 1.06374 0.94993 0.99512 1.23405 1.00164 0.91907 1.00577 1.22032 0.99685 0.96642 0.89557 1.19015 0.93210 0.90886 0.94699 1.21929 1.01085 1.03252 0.93475 1.21827 1.02046 0.95834 0.99973 1.21926 0.93453 1.02229 1.02121 1.83565 1.50069 1.34184 1.39778 1.22383 0.98460 0.83245 0.97965 1.20287 0.96493 1.02725 0.92813 0.93044 0.92508 0.92389 0.90514 0.90836 0.95079 0.93240 0.92600 0.79986 0.92437 0.92400 0.90428 0.92519 0.92306 0.92353 0.91537 0.91979 0.92545 0.91077 0.90061 0.89013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 10.24 37.16 0.38 -2.27 16 2 C 0.11 2.18 6.22 -4.04 -0.03 2.15 16 3 N -0.59 -13.01 2.46 -176.35 -0.43 -13.44 16 4 C 0.23 5.60 4.72 -5.19 -0.02 5.57 16 5 C -0.53 -13.53 7.16 -34.44 -0.25 -13.77 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.07 1.72 5.36 -17.82 -0.10 1.63 16 8 N -0.88 -23.12 13.29 55.43 0.74 -22.38 16 9 Si 0.89 19.86 29.54 -169.99 -5.02 14.84 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 13 C 0.59 13.32 7.43 -12.54 -0.09 13.23 16 14 O -0.58 -13.61 16.12 5.27 0.08 -13.52 16 15 C -0.22 -4.62 5.33 -103.27 -0.55 -5.17 16 16 C -0.14 -3.00 7.91 -37.45 -0.30 -3.30 16 17 C -0.03 -0.58 5.67 -35.74 -0.20 -0.79 16 18 C 0.02 0.34 0.92 -155.66 -0.14 0.20 16 19 C -0.14 -2.21 8.34 37.16 0.31 -1.90 16 20 C -0.14 -1.79 8.01 37.16 0.30 -1.49 16 21 C -0.14 -1.99 8.34 37.16 0.31 -1.68 16 22 O -0.18 -3.26 9.91 7.67 0.08 -3.19 16 23 C 0.03 0.59 7.37 -34.96 -0.26 0.34 16 24 C -0.07 -0.98 9.84 36.01 0.35 -0.63 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.08 1.45 8.10 -51.93 -0.42 1.03 16 29 H 0.07 1.41 7.25 -51.93 -0.38 1.03 16 30 H 0.03 0.79 8.10 -51.93 -0.42 0.37 16 31 H 0.05 1.26 5.39 -51.93 -0.28 0.98 16 32 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 33 H 0.18 4.25 5.42 -52.49 -0.28 3.96 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.45 7.97 -51.93 -0.41 1.04 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 1.04 7.97 -51.93 -0.41 0.63 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.09 1.37 8.06 -51.93 -0.42 0.95 16 LS Contribution 367.58 15.07 5.54 5.54 Total: -1.00 -28.34 367.58 -6.95 -35.28 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -7.65 Total: 4.76 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -0.28 Total: -7.89 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.30 Total: -35.82 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.16 Total: -16.71 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.34 -6.95 -35.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930463919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.385 kcal (2) G-P(sol) polarization free energy of solvation -28.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds