Wall clock time and date at job start Tue Mar 31 2020 06:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46508 * 109.47040 * 2 1 4 4 C 1.46496 * 119.99917 * 274.27219 * 3 2 1 5 5 C 1.50702 * 109.47219 * 273.83003 * 4 3 2 6 6 H 1.08002 * 119.99613 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00218 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00066 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99914 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47207 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47049 * 120.00217 * 9 7 5 12 12 H 1.48495 * 109.46866 * 239.99715 * 9 7 5 13 13 C 1.34783 * 119.99524 * 94.27164 * 3 2 1 14 14 O 1.21604 * 120.00460 * 3.94289 * 13 3 2 15 15 C 1.47383 * 119.99256 * 183.94207 * 13 3 2 16 16 C 1.47019 * 127.19594 * 318.35228 * 15 13 3 17 17 C 1.34178 * 105.95408 * 179.97438 * 16 15 13 18 18 C 1.50701 * 125.43595 * 179.97438 * 17 16 15 19 19 C 1.53003 * 109.46779 * 59.98082 * 18 17 16 20 20 C 1.52998 * 109.46983 * 179.97438 * 18 17 16 21 21 C 1.52997 * 109.47217 * 299.97911 * 18 17 16 22 22 O 1.34215 * 109.12265 * 0.02562 * 17 16 15 23 23 C 1.33646 * 110.91131 * 359.97438 * 22 17 16 24 24 C 1.50705 * 125.80098 * 180.02562 * 23 22 17 25 25 H 1.09005 * 109.47548 * 300.00243 * 1 2 3 26 26 H 1.09006 * 109.47116 * 59.99824 * 1 2 3 27 27 H 1.08998 * 109.47492 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47377 * 240.00474 * 2 1 3 29 29 H 1.08996 * 109.47048 * 119.99646 * 2 1 3 30 30 H 1.08996 * 109.47658 * 33.83200 * 4 3 2 31 31 H 1.09001 * 109.46837 * 153.83602 * 4 3 2 32 32 H 0.96998 * 120.00523 * 180.02562 * 8 7 5 33 33 H 1.07996 * 127.01860 * 0.02562 * 16 15 13 34 34 H 1.08992 * 109.47635 * 59.99879 * 19 18 17 35 35 H 1.09002 * 109.46601 * 179.97438 * 19 18 17 36 36 H 1.09001 * 109.46831 * 299.99480 * 19 18 17 37 37 H 1.09000 * 109.47381 * 60.00129 * 20 18 17 38 38 H 1.09002 * 109.47236 * 179.97438 * 20 18 17 39 39 H 1.09005 * 109.47424 * 300.00202 * 20 18 17 40 40 H 1.08998 * 109.47037 * 60.00060 * 21 18 17 41 41 H 1.09002 * 109.47141 * 180.02562 * 21 18 17 42 42 H 1.09000 * 109.46813 * 299.99667 * 21 18 17 43 43 H 1.08998 * 109.47206 * 0.02562 * 24 23 22 44 44 H 1.08999 * 109.47147 * 120.02457 * 24 23 22 45 45 H 1.09005 * 109.46454 * 240.02241 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1733 2.1034 -1.2652 5 6 3.5286 1.8035 -1.8520 6 1 4.2065 1.1408 -1.3344 7 6 3.9032 2.3749 -3.0495 8 7 3.0776 3.1813 -3.6800 9 14 5.5829 2.0025 -3.7771 10 1 6.3158 1.0732 -2.8803 11 1 5.4157 1.3742 -5.1122 12 1 6.3526 3.2647 -3.9170 13 6 2.3249 1.9876 1.1641 14 8 2.2649 1.3662 2.2076 15 6 2.7328 3.4038 1.1720 16 6 3.6324 4.0750 0.2224 17 6 3.7069 5.3527 0.6250 18 6 4.5177 6.4334 -0.0427 19 6 4.0425 6.6090 -1.4864 20 6 4.3375 7.7491 0.7171 21 6 5.9960 6.0392 -0.0366 22 8 2.9448 5.5145 1.7180 23 6 2.3545 4.3659 2.0621 24 6 1.4280 4.1674 3.2340 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.3975 1.7863 -1.9620 31 1 2.0844 3.1748 -1.0853 32 1 3.3409 3.5831 -4.5226 33 1 4.1307 3.6304 -0.6263 34 1 2.9894 6.8898 -1.4908 35 1 4.6287 7.3909 -1.9692 36 1 4.1709 5.6716 -2.0276 37 1 4.6759 7.6241 1.7456 38 1 4.9243 8.5307 0.2344 39 1 3.2843 8.0300 0.7127 40 1 6.1243 5.1018 -0.5779 41 1 6.5825 6.8210 -0.5191 42 1 6.3344 5.9141 0.9920 43 1 1.3083 5.1110 3.7664 44 1 0.4566 3.8268 2.8756 45 1 1.8490 3.4209 3.9075 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930463919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:25 Heat of formation + Delta-G solvation = -58.450419 kcal Electronic energy + Delta-G solvation = -25262.611153 eV Core-core repulsion = 21859.609113 eV Total energy + Delta-G solvation = -3403.002040 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.52227 -40.51524 -37.86466 -36.94436 -34.83101 -34.00110 -32.40196 -31.64399 -29.08682 -28.18675 -28.15745 -27.48556 -25.04394 -24.97874 -23.01918 -22.05172 -20.93220 -19.09109 -18.50843 -17.93539 -17.35572 -17.03606 -16.89951 -16.27903 -15.78269 -15.54672 -14.97464 -14.90431 -14.69484 -14.43966 -14.33832 -14.15890 -13.84532 -13.76646 -13.42994 -13.17905 -13.14351 -13.07349 -12.99978 -12.75076 -12.69235 -12.61944 -12.57912 -12.18673 -12.09822 -11.93525 -11.84570 -11.70921 -11.67649 -10.94331 -10.65836 -10.33611 -9.51578 -9.20219 -8.17805 -6.30901 0.53954 1.26429 1.36829 1.41531 1.50963 1.82500 2.13321 2.32035 2.49571 3.10712 3.48424 3.80912 3.86724 4.02011 4.05973 4.20735 4.26968 4.37556 4.41348 4.52937 4.61080 4.66319 4.74766 4.75407 4.79536 4.83175 4.87449 4.93862 4.96544 4.99948 5.01419 5.08563 5.12390 5.18822 5.20130 5.31538 5.34564 5.39866 5.47934 5.61678 5.69998 5.85573 6.08406 6.22956 6.54000 6.81177 7.27389 7.40160 8.87307 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.009988 B = 0.009015 C = 0.005286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.732690 B = 3105.088099 C = 5295.566406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.107 3.893 3 N -0.592 5.592 4 C 0.253 3.747 5 C -0.539 4.539 6 H 0.044 0.956 7 C 0.036 3.964 8 N -0.905 5.905 9 Si 0.940 3.060 10 H -0.277 1.277 11 H -0.278 1.278 12 H -0.270 1.270 13 C 0.584 3.416 14 O -0.591 6.591 15 C -0.256 4.256 16 C -0.170 4.170 17 C -0.020 4.020 18 C 0.019 3.981 19 C -0.134 4.134 20 C -0.133 4.133 21 C -0.138 4.138 22 O -0.170 6.170 23 C 0.044 3.956 24 C -0.065 4.065 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.014 0.986 31 H 0.034 0.966 32 H 0.268 0.732 33 H 0.156 0.844 34 H 0.050 0.950 35 H 0.088 0.912 36 H 0.039 0.961 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.040 0.960 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.087 0.913 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.058 7.410 6.859 10.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 N -0.322 5.322 4 C 0.132 3.868 5 C -0.578 4.578 6 H 0.063 0.937 7 C -0.165 4.165 8 N -0.543 5.543 9 Si 0.766 3.234 10 H -0.201 1.201 11 H -0.204 1.204 12 H -0.195 1.195 13 C 0.374 3.626 14 O -0.476 6.476 15 C -0.260 4.260 16 C -0.189 4.189 17 C -0.068 4.068 18 C 0.018 3.982 19 C -0.191 4.191 20 C -0.190 4.190 21 C -0.195 4.195 22 O -0.067 6.067 23 C -0.009 4.009 24 C -0.121 4.121 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.032 0.968 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.173 0.827 34 H 0.069 0.931 35 H 0.107 0.893 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.110 0.890 42 H 0.081 0.919 43 H 0.124 0.876 44 H 0.106 0.894 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.155 7.453 7.318 10.446 hybrid contribution 0.765 -0.832 -1.066 1.554 sum 0.610 6.621 6.252 9.127 Atomic orbital electron populations 1.22004 0.94389 1.03188 1.01258 1.21447 0.95410 0.82269 1.02445 1.48148 1.62339 1.14386 1.07286 1.19180 0.95776 0.92441 0.79368 1.21484 1.01163 1.28844 1.06288 0.93746 1.25437 1.00005 0.94538 0.96568 1.70012 1.36843 1.30679 1.16786 0.85779 0.80772 0.78519 0.78369 1.20146 1.20355 1.19518 1.17536 0.76040 0.85809 0.83191 1.90617 1.57441 1.66807 1.32686 1.21244 1.08302 0.95139 1.01355 1.23135 1.01673 0.93362 1.00757 1.22583 0.98677 0.96604 0.88894 1.19241 0.93222 0.91384 0.94306 1.21864 1.01329 1.02226 0.93707 1.21793 1.02517 0.94657 1.00029 1.21922 0.92996 1.02044 1.02523 1.83609 1.49715 1.33883 1.39483 1.23058 0.97504 0.82471 0.97827 1.20454 0.95572 1.04626 0.91426 0.93487 0.93172 0.89060 0.90631 0.90938 0.96755 0.94814 0.92274 0.82657 0.93130 0.89313 0.94166 0.92068 0.89515 0.92598 0.94031 0.88985 0.91933 0.87598 0.89399 0.89052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.83 10.24 71.98 0.74 -4.09 16 2 C 0.11 4.15 6.22 86.38 0.54 4.69 16 3 N -0.59 -27.15 2.46 -830.09 -2.04 -29.19 16 4 C 0.25 12.73 4.72 85.63 0.40 13.14 16 5 C -0.54 -28.46 7.16 25.60 0.18 -28.28 16 6 H 0.04 2.45 7.81 -2.91 -0.02 2.43 16 7 C 0.04 1.88 5.36 84.65 0.45 2.33 16 8 N -0.90 -48.40 13.29 21.44 0.28 -48.11 16 9 Si 0.94 41.33 29.54 68.60 2.03 43.36 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 13 C 0.58 27.21 7.43 86.65 0.64 27.85 16 14 O -0.59 -28.35 16.12 -4.04 -0.07 -28.41 16 15 C -0.26 -11.25 5.33 -18.99 -0.10 -11.35 16 16 C -0.17 -7.49 7.91 23.65 0.19 -7.30 16 17 C -0.02 -0.73 5.67 24.76 0.14 -0.59 16 18 C 0.02 0.55 0.92 -52.93 -0.05 0.50 16 19 C -0.13 -4.14 8.34 71.98 0.60 -3.54 16 20 C -0.13 -3.00 8.01 71.98 0.58 -2.43 16 21 C -0.14 -3.71 8.34 71.98 0.60 -3.11 16 22 O -0.17 -6.04 9.91 4.53 0.04 -5.99 16 23 C 0.04 1.63 7.37 25.26 0.19 1.81 16 24 C -0.06 -1.79 9.84 71.24 0.70 -1.08 16 25 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 26 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.08 2.91 8.10 -2.39 -0.02 2.89 16 29 H 0.07 2.82 7.25 -2.39 -0.02 2.80 16 30 H 0.01 0.76 8.10 -2.39 -0.02 0.74 16 31 H 0.03 1.81 5.39 -2.39 -0.01 1.80 16 32 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 33 H 0.16 7.71 5.42 -2.91 -0.02 7.69 16 34 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.04 1.53 7.97 -2.39 -0.02 1.51 16 37 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.04 1.31 7.97 -2.39 -0.02 1.29 16 41 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.09 2.59 8.06 -2.38 -0.02 2.57 16 Total: -1.00 -62.69 367.58 7.01 -55.68 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.95 Total: 24.11 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: 5.80 Total: -11.44 kcal Atomic # 7 Polarization: -75.55 SS G_CDS: -1.75 Total: -77.31 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -0.02 Total: -34.40 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -62.69 7.01 -55.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930463919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.767 kcal (2) G-P(sol) polarization free energy of solvation -62.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds