Wall clock time and date at job start Tue Mar 31 2020 06:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47369 * 2 1 4 4 C 1.50706 * 109.46883 * 240.00039 * 2 1 3 5 5 H 1.07997 * 120.00013 * 239.99397 * 4 2 1 6 6 C 1.37882 * 119.99756 * 59.99857 * 4 2 1 7 7 N 1.31514 * 120.00102 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99707 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47086 * 60.00218 * 8 6 4 10 10 H 1.48505 * 109.46760 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47708 * 300.00106 * 8 6 4 12 12 N 1.46899 * 109.47315 * 120.00318 * 2 1 3 13 13 C 1.46896 * 110.99972 * 274.99585 * 12 2 1 14 14 C 1.52998 * 109.47596 * 180.02562 * 13 12 2 15 15 H 1.09002 * 109.46661 * 305.00135 * 14 13 12 16 16 O 1.42899 * 109.46800 * 64.99729 * 14 13 12 17 17 C 1.52992 * 109.47705 * 185.00326 * 14 13 12 18 18 C 1.52997 * 109.47482 * 174.99884 * 17 14 13 19 19 O 1.42898 * 109.47319 * 180.02562 * 18 17 14 20 20 C 1.42902 * 114.00186 * 180.02562 * 19 18 17 21 21 C 1.50697 * 109.47205 * 179.97438 * 20 19 18 22 22 C 1.38239 * 119.99967 * 269.73026 * 21 20 19 23 23 C 1.38238 * 119.99948 * 179.76864 * 22 21 20 24 24 C 1.38238 * 119.99808 * 0.50205 * 23 22 21 25 25 C 1.38229 * 120.00036 * 359.74700 * 24 23 22 26 26 C 1.38235 * 120.00235 * 0.02562 * 25 24 23 27 27 H 1.09004 * 109.47074 * 299.99503 * 1 2 3 28 28 H 1.08992 * 109.47527 * 60.00040 * 1 2 3 29 29 H 1.09005 * 109.47370 * 180.02562 * 1 2 3 30 30 H 0.97002 * 120.00044 * 179.97438 * 7 6 4 31 31 H 1.00894 * 111.00229 * 38.95428 * 12 2 1 32 32 H 1.08998 * 109.47147 * 59.99875 * 13 12 2 33 33 H 1.09001 * 109.47561 * 300.00488 * 13 12 2 34 34 H 0.96705 * 114.00115 * 60.00909 * 16 14 13 35 35 H 1.09002 * 109.47103 * 54.99637 * 17 14 13 36 36 H 1.08998 * 109.46862 * 295.00449 * 17 14 13 37 37 H 1.09002 * 109.47153 * 59.99783 * 18 17 14 38 38 H 1.09001 * 109.46832 * 299.99974 * 18 17 14 39 39 H 1.09001 * 109.46918 * 299.99649 * 20 19 18 40 40 H 1.08999 * 109.46857 * 59.99535 * 20 19 18 41 41 H 1.08001 * 119.99967 * 359.97438 * 22 21 20 42 42 H 1.07997 * 119.99552 * 180.22485 * 23 22 21 43 43 H 1.07993 * 119.99849 * 179.72903 * 24 23 22 44 44 H 1.07999 * 120.00247 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.00313 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3222 -1.1195 -4.0080 9 1 1.8278 -2.5197 -4.0082 10 1 1.8275 -0.4191 -5.2205 11 1 3.8072 -1.1190 -4.0080 12 7 2.0197 -0.6925 1.1994 13 6 2.0826 0.2225 2.3468 14 6 2.5964 -0.5329 3.5741 15 1 1.9711 -1.4083 3.7500 16 8 3.9447 -0.9485 3.3475 17 6 2.5442 0.3850 4.7969 18 6 2.9391 -0.4058 6.0457 19 8 2.8898 0.4515 7.1879 20 6 3.2436 -0.1923 8.4136 21 6 3.1583 0.7996 9.5449 22 6 4.2671 1.5483 9.8928 23 6 4.1874 2.4616 10.9274 24 6 3.0019 2.6188 11.6209 25 6 1.8947 1.8664 11.2763 26 6 1.9730 0.9565 10.2386 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.7093 1.1619 -3.4844 31 1 1.4496 -1.4980 1.4100 32 1 1.0872 0.6162 2.5525 33 1 2.7589 1.0461 2.1182 34 1 4.5587 -0.2196 3.1835 35 1 1.5326 0.7728 4.9172 36 1 3.2371 1.2149 4.6580 37 1 3.9507 -0.7935 5.9253 38 1 2.2461 -1.2356 6.1844 39 1 2.5575 -1.0182 8.6015 40 1 4.2618 -0.5749 8.3422 41 1 5.1946 1.4220 9.3541 42 1 5.0526 3.0491 11.1968 43 1 2.9409 3.3291 12.4320 44 1 0.9686 1.9889 11.8183 45 1 1.1080 0.3684 9.9697 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930866211.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:58 Heat of formation + Delta-G solvation = -82.418512 kcal Electronic energy + Delta-G solvation = -22255.673040 eV Core-core repulsion = 18851.631666 eV Total energy + Delta-G solvation = -3404.041374 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.67987 -38.38470 -37.32996 -35.38687 -32.79240 -32.42207 -31.29518 -31.21905 -29.00743 -26.58875 -25.51248 -25.04127 -22.90109 -22.41205 -21.68129 -21.17983 -20.09645 -17.27333 -16.73796 -16.65739 -16.45521 -15.80803 -15.67439 -15.41782 -14.79724 -14.74759 -14.33621 -13.92214 -13.74944 -13.72850 -13.17180 -13.01641 -12.73554 -12.53464 -12.47750 -11.76128 -11.52282 -11.48175 -11.40260 -11.22820 -11.18570 -10.91007 -10.79228 -10.55387 -10.50095 -10.13708 -10.06692 -9.77962 -9.53333 -9.23443 -9.15035 -8.94636 -8.33579 -7.17728 -5.95877 -3.98862 0.94642 1.08811 3.23704 3.36881 3.40258 3.44282 3.77887 4.44083 4.49463 4.50282 4.65857 4.70073 4.79760 4.90225 4.96258 5.01368 5.11026 5.13505 5.22833 5.33092 5.35457 5.37707 5.44088 5.64517 5.66802 5.71809 5.77805 5.92942 6.01128 6.12296 6.18105 6.19176 6.28116 6.42858 6.65909 6.69345 6.84241 7.01644 7.10426 7.36727 7.75027 7.90913 7.96180 8.29754 8.56124 8.64658 9.08584 9.66302 11.11184 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.040851 B = 0.001988 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.256931 B =14082.899586 C =14320.907219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.210 3.790 3 H 0.032 0.968 4 C -0.493 4.493 5 H 0.062 0.938 6 C 0.053 3.947 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.675 5.675 13 C 0.031 3.969 14 C 0.115 3.885 15 H 0.093 0.907 16 O -0.550 6.550 17 C -0.149 4.149 18 C 0.066 3.934 19 O -0.384 6.384 20 C 0.102 3.898 21 C -0.088 4.088 22 C -0.099 4.099 23 C -0.124 4.124 24 C -0.117 4.117 25 C -0.124 4.124 26 C -0.099 4.099 27 H 0.004 0.996 28 H 0.089 0.911 29 H 0.028 0.972 30 H 0.260 0.740 31 H 0.324 0.676 32 H 0.025 0.975 33 H 0.067 0.933 34 H 0.372 0.628 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.622 1.430 27.435 27.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.103 3.897 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.305 5.305 13 C -0.100 4.100 14 C 0.055 3.945 15 H 0.111 0.889 16 O -0.355 6.355 17 C -0.188 4.188 18 C -0.010 4.010 19 O -0.304 6.304 20 C 0.026 3.974 21 C -0.089 4.089 22 C -0.117 4.117 23 C -0.142 4.142 24 C -0.135 4.135 25 C -0.142 4.142 26 C -0.117 4.117 27 H 0.023 0.977 28 H 0.108 0.892 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.141 0.859 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.219 0.781 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.899 1.231 27.183 27.489 hybrid contribution -0.550 0.117 -0.712 0.907 sum 3.349 1.349 26.471 26.717 Atomic orbital electron populations 1.22440 1.00808 0.99182 1.00448 1.19184 0.89517 0.94357 0.86662 0.95039 1.21134 1.30092 1.12417 0.89566 0.91939 1.24968 0.95396 0.95253 0.99078 1.69876 1.37415 1.23218 1.23405 0.86547 0.79186 0.79574 0.81971 1.20388 1.21515 1.20292 1.60729 1.58067 1.08634 1.03029 1.22567 0.99079 0.96422 0.91892 1.21845 0.84444 0.96802 0.91426 0.88901 1.86556 1.17915 1.37306 1.93717 1.22251 1.03399 0.99500 0.93603 1.22484 1.00761 0.92753 0.85008 1.87948 1.89946 1.37757 1.14774 1.21276 0.99839 0.93205 0.83078 1.19655 0.94220 0.98551 0.96429 1.21101 0.98376 0.95351 0.96890 1.21165 0.98106 0.98614 0.96321 1.21205 0.93236 0.99286 0.99754 1.21160 0.98721 0.96616 0.97721 1.21096 0.97024 0.98193 0.95434 0.97719 0.89245 0.95335 0.93060 0.85906 0.95648 0.91435 0.78124 0.90394 0.90746 0.92428 0.93399 0.92504 0.92423 0.85874 0.85894 0.86038 0.85909 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.94 37.16 0.33 -3.78 16 2 C 0.21 5.34 2.57 -68.86 -0.18 5.16 16 3 H 0.03 0.88 7.80 -51.93 -0.40 0.47 16 4 C -0.49 -13.85 8.84 -34.44 -0.30 -14.16 16 5 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 6 C 0.05 1.50 5.30 -17.82 -0.09 1.40 16 7 N -0.90 -25.98 11.32 55.43 0.63 -25.35 16 8 Si 0.90 21.79 29.54 -169.99 -5.02 16.76 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.68 -14.39 6.18 -107.96 -0.67 -15.06 16 13 C 0.03 0.53 5.12 -3.83 -0.02 0.51 16 14 C 0.11 1.60 3.14 -26.74 -0.08 1.51 16 15 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 16 O -0.55 -8.17 12.82 -35.23 -0.45 -8.63 16 17 C -0.15 -1.77 5.26 -26.74 -0.14 -1.91 16 18 C 0.07 0.74 5.84 37.16 0.22 0.95 16 19 O -0.38 -4.59 10.33 -35.23 -0.36 -4.96 16 20 C 0.10 0.97 6.06 36.00 0.22 1.19 16 21 C -0.09 -0.85 5.51 -104.62 -0.58 -1.43 16 22 C -0.10 -0.88 9.70 -39.58 -0.38 -1.26 16 23 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 24 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 25 C -0.12 -0.98 10.05 -39.59 -0.40 -1.37 16 26 C -0.10 -0.88 9.70 -39.58 -0.38 -1.27 16 27 H 0.00 0.08 7.45 -51.93 -0.39 -0.30 16 28 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 29 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.32 6.65 8.47 -39.30 -0.33 6.31 16 32 H 0.03 0.44 7.44 -51.93 -0.39 0.05 16 33 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 34 H 0.37 4.53 9.05 45.56 0.41 4.94 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.63 7.82 -51.93 -0.41 0.22 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 40 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 43 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 45 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -31.26 373.07 -9.70 -40.95 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -6.85 Total: 7.75 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -2.59 Total: -17.10 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: -0.04 Total: -40.41 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.82 Total: -13.58 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.26 -9.70 -40.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930866211.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.467 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds