Wall clock time and date at job start Tue Mar 31 2020 06:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47369 * 2 1 4 4 C 1.50706 * 109.46883 * 240.00039 * 2 1 3 5 5 H 1.07997 * 120.00013 * 239.99397 * 4 2 1 6 6 C 1.37882 * 119.99756 * 59.99857 * 4 2 1 7 7 N 1.31514 * 120.00102 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99707 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47086 * 60.00218 * 8 6 4 10 10 H 1.48505 * 109.46760 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47708 * 300.00106 * 8 6 4 12 12 N 1.46899 * 109.47315 * 120.00318 * 2 1 3 13 13 C 1.46896 * 110.99972 * 274.99585 * 12 2 1 14 14 C 1.52998 * 109.47596 * 180.02562 * 13 12 2 15 15 H 1.09002 * 109.46661 * 305.00135 * 14 13 12 16 16 O 1.42899 * 109.46800 * 64.99729 * 14 13 12 17 17 C 1.52992 * 109.47705 * 185.00326 * 14 13 12 18 18 C 1.52997 * 109.47482 * 174.99884 * 17 14 13 19 19 O 1.42898 * 109.47319 * 180.02562 * 18 17 14 20 20 C 1.42902 * 114.00186 * 180.02562 * 19 18 17 21 21 C 1.50697 * 109.47205 * 179.97438 * 20 19 18 22 22 C 1.38239 * 119.99967 * 269.73026 * 21 20 19 23 23 C 1.38238 * 119.99948 * 179.76864 * 22 21 20 24 24 C 1.38238 * 119.99808 * 0.50205 * 23 22 21 25 25 C 1.38229 * 120.00036 * 359.74700 * 24 23 22 26 26 C 1.38235 * 120.00235 * 0.02562 * 25 24 23 27 27 H 1.09004 * 109.47074 * 299.99503 * 1 2 3 28 28 H 1.08992 * 109.47527 * 60.00040 * 1 2 3 29 29 H 1.09005 * 109.47370 * 180.02562 * 1 2 3 30 30 H 0.97002 * 120.00044 * 179.97438 * 7 6 4 31 31 H 1.00894 * 111.00229 * 38.95428 * 12 2 1 32 32 H 1.08998 * 109.47147 * 59.99875 * 13 12 2 33 33 H 1.09001 * 109.47561 * 300.00488 * 13 12 2 34 34 H 0.96705 * 114.00115 * 60.00909 * 16 14 13 35 35 H 1.09002 * 109.47103 * 54.99637 * 17 14 13 36 36 H 1.08998 * 109.46862 * 295.00449 * 17 14 13 37 37 H 1.09002 * 109.47153 * 59.99783 * 18 17 14 38 38 H 1.09001 * 109.46832 * 299.99974 * 18 17 14 39 39 H 1.09001 * 109.46918 * 299.99649 * 20 19 18 40 40 H 1.08999 * 109.46857 * 59.99535 * 20 19 18 41 41 H 1.08001 * 119.99967 * 359.97438 * 22 21 20 42 42 H 1.07997 * 119.99552 * 180.22485 * 23 22 21 43 43 H 1.07993 * 119.99849 * 179.72903 * 24 23 22 44 44 H 1.07999 * 120.00247 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.00313 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3222 -1.1195 -4.0080 9 1 1.8278 -2.5197 -4.0082 10 1 1.8275 -0.4191 -5.2205 11 1 3.8072 -1.1190 -4.0080 12 7 2.0197 -0.6925 1.1994 13 6 2.0826 0.2225 2.3468 14 6 2.5964 -0.5329 3.5741 15 1 1.9711 -1.4083 3.7500 16 8 3.9447 -0.9485 3.3475 17 6 2.5442 0.3850 4.7969 18 6 2.9391 -0.4058 6.0457 19 8 2.8898 0.4515 7.1879 20 6 3.2436 -0.1923 8.4136 21 6 3.1583 0.7996 9.5449 22 6 4.2671 1.5483 9.8928 23 6 4.1874 2.4616 10.9274 24 6 3.0019 2.6188 11.6209 25 6 1.8947 1.8664 11.2763 26 6 1.9730 0.9565 10.2386 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.7093 1.1619 -3.4844 31 1 1.4496 -1.4980 1.4100 32 1 1.0872 0.6162 2.5525 33 1 2.7589 1.0461 2.1182 34 1 4.5587 -0.2196 3.1835 35 1 1.5326 0.7728 4.9172 36 1 3.2371 1.2149 4.6580 37 1 3.9507 -0.7935 5.9253 38 1 2.2461 -1.2356 6.1844 39 1 2.5575 -1.0182 8.6015 40 1 4.2618 -0.5749 8.3422 41 1 5.1946 1.4220 9.3541 42 1 5.0526 3.0491 11.1968 43 1 2.9409 3.3291 12.4320 44 1 0.9686 1.9889 11.8183 45 1 1.1080 0.3684 9.9697 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930866211.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:58 Heat of formation + Delta-G solvation = -103.478287 kcal Electronic energy + Delta-G solvation = -22256.586260 eV Core-core repulsion = 18851.631666 eV Total energy + Delta-G solvation = -3404.954594 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.31999 -39.44325 -38.37217 -37.08334 -34.40110 -33.54592 -32.30881 -31.80362 -30.64614 -27.68660 -27.21196 -26.47606 -23.61805 -23.49168 -22.54912 -22.21722 -21.89915 -18.49501 -17.94359 -17.53891 -17.42408 -17.11469 -16.72759 -16.53876 -16.22678 -15.71063 -15.50840 -15.31591 -14.94281 -14.56303 -14.32699 -14.27230 -13.69189 -13.64376 -13.55038 -13.32744 -13.20008 -12.84016 -12.69831 -12.42535 -12.34139 -12.23408 -12.14174 -11.96480 -11.88415 -11.87755 -11.66506 -11.17223 -10.73027 -10.57308 -10.47973 -9.83761 -9.77165 -8.91241 -8.09153 -6.20215 0.32536 0.48500 1.43726 1.45588 1.53429 2.43943 2.52383 3.03795 3.18797 3.48973 3.74500 3.86754 3.90022 3.97056 4.09502 4.14035 4.23319 4.27835 4.33113 4.39574 4.44712 4.48010 4.63694 4.66050 4.70754 4.73411 4.76430 4.85372 4.89089 5.06322 5.08010 5.09863 5.14305 5.26190 5.41287 5.53673 5.59815 5.65605 5.69548 5.81709 6.08236 6.21900 6.27767 6.65214 6.80098 6.92517 6.98478 7.49671 8.96047 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.040851 B = 0.001988 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.256931 B =14082.899586 C =14320.907219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.215 3.785 3 H 0.000 1.000 4 C -0.514 4.514 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.923 5.923 8 Si 0.962 3.038 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.680 5.680 13 C 0.032 3.968 14 C 0.129 3.871 15 H 0.098 0.902 16 O -0.564 6.564 17 C -0.139 4.139 18 C 0.070 3.930 19 O -0.403 6.403 20 C 0.100 3.900 21 C -0.109 4.109 22 C -0.115 4.115 23 C -0.132 4.132 24 C -0.122 4.122 25 C -0.132 4.132 26 C -0.115 4.115 27 H 0.025 0.975 28 H 0.061 0.939 29 H 0.032 0.968 30 H 0.261 0.739 31 H 0.330 0.670 32 H 0.029 0.971 33 H 0.060 0.940 34 H 0.383 0.617 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.129 0.871 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.142 0.858 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.847 1.088 28.646 28.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.106 3.894 3 H 0.018 0.982 4 C -0.553 4.553 5 H 0.071 0.929 6 C -0.192 4.192 7 N -0.563 5.563 8 Si 0.788 3.212 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.200 1.200 12 N -0.310 5.310 13 C -0.098 4.098 14 C 0.069 3.931 15 H 0.115 0.885 16 O -0.370 6.370 17 C -0.178 4.178 18 C -0.006 4.006 19 O -0.324 6.324 20 C 0.024 3.976 21 C -0.109 4.109 22 C -0.133 4.133 23 C -0.149 4.149 24 C -0.140 4.140 25 C -0.149 4.149 26 C -0.133 4.133 27 H 0.044 0.956 28 H 0.080 0.920 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.147 0.853 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.231 0.769 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.147 0.853 42 H 0.160 0.840 43 H 0.162 0.838 44 H 0.160 0.840 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.132 0.887 28.417 28.729 hybrid contribution -0.606 0.272 -1.005 1.204 sum 3.526 1.159 27.412 27.662 Atomic orbital electron populations 1.22248 1.00023 0.99273 1.00104 1.18949 0.90020 0.92644 0.87795 0.98162 1.21429 1.30346 1.12438 0.91103 0.92858 1.25745 0.95530 0.95945 1.01960 1.70003 1.38072 1.24234 1.24030 0.85556 0.78624 0.78651 0.78418 1.19675 1.20962 1.19952 1.60585 1.57839 1.09280 1.03314 1.22646 0.99343 0.96010 0.91829 1.21678 0.84050 0.96829 0.90545 0.88451 1.86528 1.18364 1.38356 1.93749 1.22092 1.03538 0.99058 0.93080 1.22410 1.01052 0.92596 0.84547 1.87909 1.90199 1.38638 1.15605 1.21403 1.00574 0.93440 0.82163 1.19819 0.94887 0.99271 0.96904 1.21315 0.98592 0.95792 0.97564 1.21474 0.99086 0.98437 0.95937 1.21557 0.92920 0.99382 1.00116 1.21471 0.99772 0.96197 0.97501 1.21312 0.97155 0.98835 0.95968 0.95555 0.91992 0.94890 0.93016 0.85273 0.95276 0.92176 0.76889 0.90313 0.90662 0.92269 0.92567 0.91513 0.91586 0.85279 0.83999 0.83771 0.84001 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.60 8.94 71.98 0.64 -6.96 16 2 C 0.21 10.98 2.57 44.17 0.11 11.10 16 3 H 0.00 0.02 7.80 -2.39 -0.02 0.01 16 4 C -0.51 -29.08 8.84 25.60 0.23 -28.86 16 5 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 6 C 0.01 0.35 5.30 84.66 0.45 0.79 16 7 N -0.92 -53.79 11.32 21.45 0.24 -53.55 16 8 Si 0.96 44.60 29.54 68.60 2.03 46.62 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 12 N -0.68 -28.77 6.18 -495.47 -3.06 -31.83 16 13 C 0.03 1.07 5.12 86.30 0.44 1.51 16 14 C 0.13 3.41 3.14 30.59 0.10 3.51 16 15 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 16 O -0.56 -16.01 12.82 -148.98 -1.91 -17.92 16 17 C -0.14 -3.11 5.26 30.59 0.16 -2.95 16 18 C 0.07 1.45 5.84 71.98 0.42 1.87 16 19 O -0.40 -9.21 10.33 -148.98 -1.54 -10.75 16 20 C 0.10 1.81 6.06 71.24 0.43 2.24 16 21 C -0.11 -2.02 5.51 -19.87 -0.11 -2.13 16 22 C -0.11 -1.96 9.70 22.27 0.22 -1.74 16 23 C -0.13 -1.89 10.05 22.27 0.22 -1.66 16 24 C -0.12 -1.62 10.05 22.27 0.22 -1.40 16 25 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 26 C -0.11 -1.95 9.70 22.27 0.22 -1.73 16 27 H 0.03 1.11 7.45 -2.38 -0.02 1.09 16 28 H 0.06 3.36 6.07 -2.39 -0.01 3.34 16 29 H 0.03 1.51 8.13 -2.38 -0.02 1.49 16 30 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.33 13.25 8.47 -89.70 -0.76 12.49 16 32 H 0.03 0.97 7.44 -2.39 -0.02 0.95 16 33 H 0.06 2.11 8.06 -2.39 -0.02 2.09 16 34 H 0.38 8.91 9.05 -74.05 -0.67 8.24 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 36 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.06 1.21 7.82 -2.39 -0.02 1.19 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 1.03 8.09 -2.39 -0.02 1.01 16 40 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 41 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 42 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 43 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 44 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 45 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -66.00 373.07 -0.73 -66.73 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: -0.46 Total: 28.77 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: 3.98 Total: -28.07 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -2.82 Total: -85.38 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -3.45 Total: -28.68 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -66.00 -0.73 -66.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930866211.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.751 kcal (2) G-P(sol) polarization free energy of solvation -66.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds