Wall clock time and date at job start Tue Mar 31 2020 06:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47443 * 2 1 4 4 C 1.50704 * 109.46757 * 119.99528 * 2 1 3 5 5 H 1.08006 * 119.99509 * 119.99692 * 4 2 1 6 6 C 1.37870 * 120.00516 * 299.99964 * 4 2 1 7 7 N 1.31519 * 120.00142 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 119.99941 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.47395 * 89.99692 * 8 6 4 10 10 H 1.48494 * 109.46992 * 210.00226 * 8 6 4 11 11 H 1.48503 * 109.46965 * 329.99771 * 8 6 4 12 12 N 1.46899 * 109.47193 * 239.99590 * 2 1 3 13 13 C 1.46896 * 110.99972 * 84.99954 * 12 2 1 14 14 C 1.52998 * 109.47596 * 180.02562 * 13 12 2 15 15 H 1.09002 * 109.46661 * 305.00135 * 14 13 12 16 16 O 1.42899 * 109.46800 * 64.99729 * 14 13 12 17 17 C 1.52992 * 109.47705 * 185.00326 * 14 13 12 18 18 C 1.52997 * 109.47482 * 174.99884 * 17 14 13 19 19 O 1.42898 * 109.47319 * 180.02562 * 18 17 14 20 20 C 1.42902 * 114.00186 * 180.02562 * 19 18 17 21 21 C 1.50697 * 109.47205 * 179.97438 * 20 19 18 22 22 C 1.38239 * 119.99967 * 269.73026 * 21 20 19 23 23 C 1.38238 * 119.99948 * 179.76864 * 22 21 20 24 24 C 1.38238 * 119.99808 * 0.50205 * 23 22 21 25 25 C 1.38229 * 120.00036 * 359.74700 * 24 23 22 26 26 C 1.38235 * 120.00235 * 0.02562 * 25 24 23 27 27 H 1.09003 * 109.47117 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47282 * 300.00165 * 1 2 3 29 29 H 1.08998 * 109.46888 * 59.99998 * 1 2 3 30 30 H 0.96995 * 119.99548 * 179.97438 * 7 6 4 31 31 H 1.00894 * 111.00229 * 208.95796 * 12 2 1 32 32 H 1.08998 * 109.47147 * 59.99875 * 13 12 2 33 33 H 1.09001 * 109.47561 * 300.00488 * 13 12 2 34 34 H 0.96705 * 114.00115 * 60.00909 * 16 14 13 35 35 H 1.09002 * 109.47103 * 54.99637 * 17 14 13 36 36 H 1.08998 * 109.46862 * 295.00449 * 17 14 13 37 37 H 1.09002 * 109.47153 * 59.99783 * 18 17 14 38 38 H 1.09001 * 109.46832 * 299.99974 * 18 17 14 39 39 H 1.09001 * 109.46918 * 299.99649 * 20 19 18 40 40 H 1.08999 * 109.46857 * 59.99535 * 20 19 18 41 41 H 1.08001 * 119.99967 * 359.97438 * 22 21 20 42 42 H 1.07997 * 119.99552 * 180.22485 * 23 22 21 43 43 H 1.07993 * 119.99849 * 179.72903 * 24 23 22 44 44 H 1.07999 * 120.00247 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.00313 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5567 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9760 1.9952 3.9067 11 1 0.8471 2.1765 1.4920 12 7 2.0197 -0.6926 -1.1994 13 6 2.0825 0.2224 -2.3469 14 6 2.5951 -0.5333 -3.5744 15 1 3.5507 -1.0021 -3.3396 16 8 1.6493 -1.5388 -3.9439 17 6 2.7790 0.4454 -4.7359 18 6 3.4083 -0.2853 -5.9238 19 8 3.5807 0.6290 -7.0084 20 6 4.1642 0.0442 -8.1744 21 6 4.2980 1.0925 -9.2488 22 6 3.2704 1.2918 -10.1518 23 6 3.3912 2.2567 -11.1344 24 6 4.5438 3.0151 -11.2203 25 6 5.5734 2.8122 -10.3206 26 6 5.4507 1.8506 -9.3351 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.9031 -0.5279 4.4376 31 1 2.9173 -1.1206 -1.0287 32 1 2.7588 1.0460 -2.1182 33 1 1.0871 0.6162 -2.5525 34 1 0.7742 -1.1928 -4.1668 35 1 3.4314 1.2610 -4.4239 36 1 1.8093 0.8477 -5.0290 37 1 2.7560 -1.1009 -6.2357 38 1 4.3781 -0.6875 -5.6305 39 1 5.1493 -0.3518 -7.9281 40 1 3.5269 -0.7640 -8.5332 41 1 2.3719 0.6961 -10.0875 42 1 2.5869 2.4149 -11.8375 43 1 4.6399 3.7658 -11.9907 44 1 6.4740 3.4044 -10.3880 45 1 6.2553 1.6918 -8.6324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930866214.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:00 Heat of formation + Delta-G solvation = -98.941214 kcal Electronic energy + Delta-G solvation = -22328.883848 eV Core-core repulsion = 18924.125996 eV Total energy + Delta-G solvation = -3404.757852 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.32362 -39.46348 -38.39442 -37.14736 -34.45513 -33.57163 -32.46487 -31.80639 -31.28805 -27.99279 -27.14904 -26.49162 -23.67715 -23.49435 -22.51721 -22.12992 -21.62731 -18.95361 -17.94245 -17.68167 -17.50957 -17.23987 -16.86662 -16.52397 -16.23759 -15.72354 -15.53826 -15.22247 -15.12230 -14.80960 -14.60502 -14.29860 -14.02481 -13.78359 -13.63485 -13.41204 -13.24641 -13.06168 -12.67603 -12.59051 -12.38576 -12.22581 -12.06737 -11.88896 -11.88076 -11.65823 -11.47203 -11.14916 -10.84557 -10.71249 -10.57778 -9.84052 -9.77479 -9.11021 -8.32589 -6.37442 0.32234 0.48215 1.30064 1.34036 1.44957 2.29549 2.50759 3.01192 3.03146 3.42636 3.70171 3.81817 3.89651 3.96818 4.08817 4.13401 4.20405 4.27493 4.32320 4.37278 4.41366 4.47635 4.54694 4.62954 4.64634 4.71920 4.74790 4.75856 4.82084 4.90666 5.00167 5.06086 5.08260 5.14035 5.25329 5.48669 5.53427 5.59606 5.62538 5.65272 5.97852 6.07922 6.21179 6.48702 6.63615 6.79549 6.97425 7.29167 8.83848 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.033113 B = 0.002091 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.388501 B =13387.367861 C =13560.734118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.184 3.816 3 H -0.004 1.004 4 C -0.526 4.526 5 H 0.039 0.961 6 C 0.011 3.989 7 N -0.946 5.946 8 Si 0.956 3.044 9 H -0.266 1.266 10 H -0.297 1.297 11 H -0.250 1.250 12 N -0.675 5.675 13 C 0.027 3.973 14 C 0.127 3.873 15 H 0.092 0.908 16 O -0.563 6.563 17 C -0.138 4.138 18 C 0.069 3.931 19 O -0.402 6.402 20 C 0.100 3.900 21 C -0.109 4.109 22 C -0.114 4.114 23 C -0.131 4.131 24 C -0.122 4.122 25 C -0.132 4.132 26 C -0.115 4.115 27 H 0.049 0.951 28 H 0.030 0.970 29 H 0.058 0.942 30 H 0.267 0.733 31 H 0.334 0.666 32 H 0.031 0.969 33 H 0.077 0.923 34 H 0.384 0.616 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.130 0.870 42 H 0.143 0.857 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.216 7.605 -31.465 32.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.075 3.925 3 H 0.013 0.987 4 C -0.564 4.564 5 H 0.057 0.943 6 C -0.186 4.186 7 N -0.586 5.586 8 Si 0.783 3.217 9 H -0.192 1.192 10 H -0.225 1.225 11 H -0.175 1.175 12 N -0.306 5.306 13 C -0.103 4.103 14 C 0.067 3.933 15 H 0.110 0.890 16 O -0.370 6.370 17 C -0.177 4.177 18 C -0.008 4.008 19 O -0.323 6.323 20 C 0.024 3.976 21 C -0.109 4.109 22 C -0.132 4.132 23 C -0.149 4.149 24 C -0.140 4.140 25 C -0.150 4.150 26 C -0.133 4.133 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.151 0.849 32 H 0.049 0.951 33 H 0.096 0.904 34 H 0.233 0.767 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.148 0.852 42 H 0.161 0.839 43 H 0.162 0.838 44 H 0.159 0.841 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.051 7.145 -31.330 32.279 hybrid contribution 0.147 0.965 1.006 1.402 sum 3.198 8.111 -30.324 31.553 Atomic orbital electron populations 1.21967 0.97212 1.00941 0.98890 1.19405 0.92931 0.92070 0.88126 0.98685 1.21414 1.31491 1.12664 0.90821 0.94320 1.25844 0.97292 1.00168 0.95342 1.70043 1.47522 1.42404 0.98608 0.85746 0.79127 0.79667 0.77181 1.19176 1.22523 1.17459 1.60409 1.32838 1.32827 1.04519 1.22765 1.01261 0.94309 0.91931 1.21662 0.92786 0.88235 0.90614 0.89030 1.86559 1.24933 1.35729 1.89740 1.22085 1.02785 0.98863 0.93936 1.22422 0.99852 0.92030 0.86457 1.87904 1.83191 1.37867 1.23292 1.21397 0.98386 0.93705 0.84088 1.19815 0.95483 0.98903 0.96669 1.21315 0.98248 0.98551 0.95066 1.21477 0.98811 0.95856 0.98755 1.21556 0.93485 0.99582 0.99345 1.21467 1.00100 0.98174 0.95231 1.21310 0.97702 0.95689 0.98624 0.93165 0.95143 0.92342 0.92430 0.84869 0.95068 0.90446 0.76747 0.90347 0.90122 0.92188 0.92922 0.91686 0.91521 0.85176 0.83947 0.83787 0.84069 0.85364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.65 8.89 71.98 0.64 -5.00 16 2 C 0.18 8.60 2.19 44.17 0.10 8.69 16 3 H 0.00 -0.20 6.86 -2.39 -0.02 -0.22 16 4 C -0.53 -30.15 9.17 25.60 0.23 -29.92 16 5 H 0.04 2.46 7.86 -2.91 -0.02 2.43 16 6 C 0.01 0.66 5.45 84.65 0.46 1.12 16 7 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 8 Si 0.96 45.19 24.37 68.60 1.67 46.86 16 9 H -0.27 -11.98 6.87 99.48 0.68 -11.30 16 10 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 11 H -0.25 -10.99 6.53 99.48 0.65 -10.34 16 12 N -0.68 -26.92 6.25 -495.46 -3.10 -30.02 16 13 C 0.03 0.82 5.12 86.30 0.44 1.26 16 14 C 0.13 3.11 3.14 30.59 0.10 3.21 16 15 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 16 O -0.56 -14.55 12.82 -148.98 -1.91 -16.46 16 17 C -0.14 -2.81 5.26 30.59 0.16 -2.65 16 18 C 0.07 1.35 5.84 71.98 0.42 1.77 16 19 O -0.40 -8.78 10.33 -148.98 -1.54 -10.32 16 20 C 0.10 1.75 6.06 71.24 0.43 2.18 16 21 C -0.11 -1.95 5.51 -19.87 -0.11 -2.06 16 22 C -0.11 -1.85 9.70 22.27 0.22 -1.63 16 23 C -0.13 -1.79 10.05 22.27 0.22 -1.56 16 24 C -0.12 -1.55 10.05 22.27 0.22 -1.33 16 25 C -0.13 -1.84 10.05 22.27 0.22 -1.61 16 26 C -0.12 -1.91 9.70 22.27 0.22 -1.70 16 27 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.03 1.32 3.27 -2.38 -0.01 1.31 16 29 H 0.06 2.07 7.45 -2.39 -0.02 2.06 16 30 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 31 H 0.33 13.84 8.22 -89.70 -0.74 13.11 16 32 H 0.03 0.94 8.05 -2.39 -0.02 0.93 16 33 H 0.08 2.18 7.44 -2.39 -0.02 2.16 16 34 H 0.38 7.48 9.05 -74.05 -0.67 6.81 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 1.15 7.82 -2.39 -0.02 1.13 16 38 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.06 0.99 8.09 -2.39 -0.02 0.98 16 40 H 0.07 1.00 8.08 -2.39 -0.02 0.98 16 41 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 42 H 0.14 1.27 8.06 -2.91 -0.02 1.24 16 43 H 0.14 1.10 8.06 -2.91 -0.02 1.07 16 44 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 45 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -69.60 365.93 -1.11 -70.71 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: -0.51 Total: 27.48 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: 3.98 Total: -29.24 kcal Atomic # 7 Polarization: -86.23 SS G_CDS: -2.80 Total: -89.03 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -3.45 Total: -26.78 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.67 Total: 46.86 kcal Total: -69.60 -1.11 -70.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930866214.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.232 kcal (2) G-P(sol) polarization free energy of solvation -69.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds