Wall clock time and date at job start Tue Mar 31 2020 06:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99799 * 2 1 4 4 C 1.53003 * 109.46503 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47333 * 65.00229 * 4 3 2 6 6 C 1.46494 * 119.99855 * 269.99773 * 5 4 3 7 7 C 1.50702 * 109.47023 * 269.99937 * 6 5 4 8 8 H 1.07990 * 120.00115 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99746 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99660 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00150 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47102 * 89.99865 * 11 9 7 13 13 H 1.48501 * 109.47131 * 210.00217 * 11 9 7 14 14 H 1.48499 * 109.47264 * 329.99900 * 11 9 7 15 15 C 1.34779 * 119.99688 * 90.00014 * 5 4 3 16 16 O 1.21279 * 120.00010 * 359.97438 * 15 5 4 17 17 C 1.50694 * 119.99464 * 180.02562 * 15 5 4 18 18 H 1.08999 * 115.51035 * 325.34731 * 17 15 5 19 19 C 1.55940 * 117.06382 * 111.51145 * 17 15 5 20 20 H 1.09009 * 120.17572 * 355.49847 * 19 17 15 21 21 C 1.53010 * 117.42697 * 179.97438 * 17 15 5 22 22 H 1.08995 * 119.98434 * 5.91377 * 21 17 15 23 23 C 1.55924 * 117.17588 * 160.72230 * 21 17 15 24 24 H 1.09002 * 115.92114 * 264.47279 * 23 21 17 25 25 C 1.55925 * 104.49951 * 134.77571 * 23 21 17 26 26 C 1.54578 * 104.64637 * 289.72144 * 25 23 21 27 27 C 1.55917 * 117.23743 * 198.91676 * 19 17 15 28 28 H 1.09006 * 115.92178 * 97.64896 * 27 19 17 29 29 C 1.56949 * 100.65384 * 331.39318 * 27 19 17 30 30 H 1.09005 * 109.47329 * 59.99805 * 1 2 3 31 31 H 1.09003 * 109.47665 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47246 * 300.00031 * 1 2 3 33 33 H 1.08996 * 109.46907 * 60.00496 * 3 2 1 34 34 H 1.08994 * 109.47180 * 300.00064 * 3 2 1 35 35 H 1.09000 * 109.47401 * 304.99770 * 4 3 2 36 36 H 1.09004 * 109.46702 * 185.00376 * 4 3 2 37 37 H 1.08996 * 109.47425 * 30.00166 * 6 5 4 38 38 H 1.09001 * 109.47270 * 150.00158 * 6 5 4 39 39 H 0.97000 * 119.99685 * 179.97438 * 10 9 7 40 40 H 1.09001 * 110.39738 * 48.51503 * 25 23 21 41 41 H 1.09001 * 110.40296 * 170.93053 * 25 23 21 42 42 H 1.09002 * 110.40455 * 241.20856 * 26 25 23 43 43 H 1.08997 * 110.40078 * 118.78703 * 26 25 23 44 44 H 1.08992 * 112.02927 * 189.69228 * 29 27 19 45 45 H 1.09001 * 112.02460 * 63.17151 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2528 6 6 4.1051 -0.8921 -1.3428 7 6 5.5009 -1.2978 -0.9450 8 1 6.2197 -0.5460 -0.6546 9 6 5.8605 -2.6289 -0.9528 10 7 7.0787 -2.9829 -0.6060 11 14 4.6178 -3.9292 -1.4571 12 1 4.7035 -4.1538 -2.9225 13 1 4.9118 -5.1980 -0.7438 14 1 3.2501 -3.4694 -1.1060 15 6 4.2615 1.3338 -2.3218 16 8 4.1539 2.5395 -2.2473 17 6 4.7138 0.6957 -3.6099 18 1 5.3287 -0.1976 -3.5007 19 6 3.7344 0.7708 -4.8210 20 1 2.7414 1.2030 -4.6967 21 6 5.0221 1.6244 -4.7862 22 1 5.0051 2.7051 -4.6460 23 6 5.9070 1.0498 -5.9342 24 1 6.9722 1.2724 -5.8717 25 6 5.1800 1.4856 -7.2430 26 6 3.8921 0.6316 -7.2776 27 6 3.9622 -0.2393 -5.9867 28 1 3.3407 -1.1346 -5.9698 29 6 5.5109 -0.4678 -5.8741 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8514 0.5681 0.8409 36 1 3.9785 2.1765 0.0890 37 1 3.3852 -1.3629 -0.6735 38 1 3.9120 -1.2114 -2.3669 39 1 7.3316 -3.9194 -0.6112 40 1 4.9318 2.5463 -7.2045 41 1 5.8016 1.2713 -8.1124 42 1 3.8804 -0.0027 -8.1640 43 1 3.0106 1.2724 -7.2561 44 1 5.9044 -1.0270 -6.7228 45 1 5.7886 -0.9257 -4.9247 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931892031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:42 Heat of formation + Delta-G solvation = -40.584309 kcal Electronic energy + Delta-G solvation = -24949.673891 eV Core-core repulsion = 21547.446584 eV Total energy + Delta-G solvation = -3402.227307 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.96253 -38.86660 -37.41462 -34.97240 -33.16443 -32.48880 -30.08382 -28.77540 -27.88552 -27.51379 -26.13553 -24.36324 -22.46050 -21.98409 -21.43246 -19.46933 -18.40256 -17.87614 -17.01066 -16.85685 -16.07274 -15.95874 -15.68826 -15.19556 -15.07181 -14.74699 -14.14566 -13.83796 -13.50836 -12.83975 -12.59754 -12.36971 -12.18916 -12.07911 -11.80317 -11.64030 -11.59757 -11.37813 -11.20881 -11.13448 -10.96952 -10.87351 -10.80000 -10.63153 -10.51596 -10.17818 -10.14922 -9.57500 -9.48667 -9.40312 -9.27582 -9.01447 -8.63928 -7.69531 -6.14584 -4.15084 3.09913 3.23860 3.32254 3.37155 3.74008 4.05234 4.23221 4.34779 4.55890 4.69837 4.70532 5.17423 5.24979 5.30228 5.31591 5.33081 5.38545 5.41365 5.46165 5.53376 5.55375 5.58017 5.64023 5.67077 5.71706 5.75063 5.80282 5.98452 6.00276 6.06319 6.20065 6.23394 6.29180 6.33735 6.39005 6.43335 6.54874 6.60805 6.74607 6.92580 7.36925 7.43539 7.56105 8.20067 8.48770 8.88685 8.98095 9.45832 10.98106 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.010910 B = 0.006838 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.879976 B = 4093.565507 C = 5420.253688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.048 3.952 4 C 0.121 3.879 5 N -0.578 5.578 6 C 0.212 3.788 7 C -0.539 4.539 8 H 0.076 0.924 9 C 0.077 3.923 10 N -0.894 5.894 11 Si 0.867 3.133 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.260 1.260 15 C 0.549 3.451 16 O -0.577 6.577 17 C -0.151 4.151 18 H 0.141 0.859 19 C -0.142 4.142 20 H 0.109 0.891 21 C -0.129 4.129 22 H 0.116 0.884 23 C -0.074 4.074 24 H 0.100 0.900 25 C -0.115 4.115 26 C -0.115 4.115 27 C -0.073 4.073 28 H 0.098 0.902 29 C -0.140 4.140 30 H 0.035 0.965 31 H 0.082 0.918 32 H 0.036 0.964 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.046 0.954 38 H 0.029 0.971 39 H 0.265 0.735 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.339 5.705 -8.485 13.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C -0.030 4.030 4 C -0.002 4.002 5 N -0.306 5.306 6 C 0.091 3.909 7 C -0.578 4.578 8 H 0.095 0.905 9 C -0.126 4.126 10 N -0.531 5.531 11 Si 0.694 3.306 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.184 1.184 15 C 0.337 3.663 16 O -0.459 6.459 17 C -0.172 4.172 18 H 0.159 0.841 19 C -0.161 4.161 20 H 0.127 0.873 21 C -0.148 4.148 22 H 0.134 0.866 23 C -0.093 4.093 24 H 0.118 0.882 25 C -0.152 4.152 26 C -0.152 4.152 27 C -0.092 4.092 28 H 0.117 0.883 29 C -0.177 4.177 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.175 5.985 -8.407 13.808 hybrid contribution -0.775 -0.640 -0.024 1.005 sum -9.950 5.345 -8.430 14.094 Atomic orbital electron populations 1.22684 0.82125 1.02327 0.99321 1.88022 1.18726 1.27748 1.95243 1.23046 0.95302 0.84745 0.99862 1.21363 0.90901 0.99882 0.88093 1.47725 1.63749 1.09015 1.10160 1.19839 0.98018 0.75395 0.97678 1.21443 0.96049 0.93689 1.46595 0.90549 1.24842 0.95023 0.98247 0.94524 1.69902 1.18143 1.17389 1.47714 0.86965 0.82786 0.81655 0.79232 1.19873 1.21073 1.18432 1.19491 0.76191 0.85980 0.84594 1.90569 1.55838 1.14739 1.84716 1.22876 1.03733 1.03033 0.87546 0.84113 1.23962 0.94616 1.01715 0.95771 0.87265 1.23514 0.97630 0.97679 0.95946 0.86617 1.23159 0.98004 0.95023 0.93077 0.88221 1.22497 0.96292 0.99559 0.96889 1.22489 0.97868 0.97936 0.96919 1.23123 0.96715 0.96411 0.92914 0.88346 1.23791 0.95104 0.96176 1.02612 0.94611 0.89966 0.94559 0.93026 0.93370 0.89232 0.89219 0.93630 0.95318 0.92504 0.91792 0.91911 0.91897 0.91885 0.91125 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.38 -6.53 9.53 -35.23 -0.34 -6.87 16 3 C 0.05 0.78 6.28 37.16 0.23 1.01 16 4 C 0.12 2.26 5.81 -4.04 -0.02 2.24 16 5 N -0.58 -12.35 2.42 -175.06 -0.42 -12.77 16 6 C 0.21 4.91 3.69 -5.20 -0.02 4.90 16 7 C -0.54 -14.54 9.63 -34.44 -0.33 -14.87 16 8 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 9 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 10 N -0.89 -26.31 13.96 55.43 0.77 -25.53 16 11 Si 0.87 20.37 27.47 -169.99 -4.67 15.70 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 15 C 0.55 11.69 7.46 -10.99 -0.08 11.61 16 16 O -0.58 -13.04 15.93 5.56 0.09 -12.95 16 17 C -0.15 -2.88 4.10 -90.20 -0.37 -3.25 16 18 H 0.14 2.93 4.94 -51.93 -0.26 2.67 16 19 C -0.14 -2.25 6.32 -86.68 -0.55 -2.80 16 20 H 0.11 1.72 8.14 -51.92 -0.42 1.30 16 21 C -0.13 -2.10 5.82 -88.25 -0.51 -2.61 16 22 H 0.12 1.97 7.83 -51.93 -0.41 1.56 16 23 C -0.07 -1.02 5.17 -85.35 -0.44 -1.46 16 24 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 25 C -0.11 -1.31 6.21 -24.34 -0.15 -1.46 16 26 C -0.11 -1.30 6.21 -24.37 -0.15 -1.45 16 27 C -0.07 -0.99 5.18 -85.39 -0.44 -1.44 16 28 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 29 C -0.14 -1.99 6.23 -22.45 -0.14 -2.13 16 30 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.69 8.07 -51.93 -0.42 1.27 16 36 H 0.09 1.62 7.42 -51.93 -0.39 1.24 16 37 H 0.05 1.09 6.18 -51.93 -0.32 0.77 16 38 H 0.03 0.66 6.07 -51.93 -0.32 0.34 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 40 H 0.06 0.71 8.04 -51.93 -0.42 0.30 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.69 8.04 -51.93 -0.42 0.28 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.09 1.43 5.94 -51.93 -0.31 1.12 16 LS Contribution 353.13 15.07 5.32 5.32 Total: -1.00 -30.82 353.13 -8.70 -39.52 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -7.49 Total: 5.77 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -1.97 Total: -8.18 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.35 Total: -38.31 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.25 Total: -19.82 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.67 Total: 15.70 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.82 -8.70 -39.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931892031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.062 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds