Wall clock time and date at job start Tue Mar 31 2020 06:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99799 * 2 1 4 4 C 1.53003 * 109.46503 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47333 * 65.00229 * 4 3 2 6 6 C 1.46494 * 119.99855 * 269.99773 * 5 4 3 7 7 C 1.50702 * 109.47023 * 269.99937 * 6 5 4 8 8 H 1.07990 * 120.00115 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99746 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99660 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00150 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47102 * 89.99865 * 11 9 7 13 13 H 1.48501 * 109.47131 * 210.00217 * 11 9 7 14 14 H 1.48499 * 109.47264 * 329.99900 * 11 9 7 15 15 C 1.34779 * 119.99688 * 90.00014 * 5 4 3 16 16 O 1.21279 * 120.00010 * 359.97438 * 15 5 4 17 17 C 1.50694 * 119.99464 * 180.02562 * 15 5 4 18 18 H 1.08999 * 115.51035 * 325.34731 * 17 15 5 19 19 C 1.55940 * 117.06382 * 111.51145 * 17 15 5 20 20 H 1.09009 * 120.17572 * 355.49847 * 19 17 15 21 21 C 1.53010 * 117.42697 * 179.97438 * 17 15 5 22 22 H 1.08995 * 119.98434 * 5.91377 * 21 17 15 23 23 C 1.55924 * 117.17588 * 160.72230 * 21 17 15 24 24 H 1.09002 * 115.92114 * 264.47279 * 23 21 17 25 25 C 1.55925 * 104.49951 * 134.77571 * 23 21 17 26 26 C 1.54578 * 104.64637 * 289.72144 * 25 23 21 27 27 C 1.55917 * 117.23743 * 198.91676 * 19 17 15 28 28 H 1.09006 * 115.92178 * 97.64896 * 27 19 17 29 29 C 1.56949 * 100.65384 * 331.39318 * 27 19 17 30 30 H 1.09005 * 109.47329 * 59.99805 * 1 2 3 31 31 H 1.09003 * 109.47665 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47246 * 300.00031 * 1 2 3 33 33 H 1.08996 * 109.46907 * 60.00496 * 3 2 1 34 34 H 1.08994 * 109.47180 * 300.00064 * 3 2 1 35 35 H 1.09000 * 109.47401 * 304.99770 * 4 3 2 36 36 H 1.09004 * 109.46702 * 185.00376 * 4 3 2 37 37 H 1.08996 * 109.47425 * 30.00166 * 6 5 4 38 38 H 1.09001 * 109.47270 * 150.00158 * 6 5 4 39 39 H 0.97000 * 119.99685 * 179.97438 * 10 9 7 40 40 H 1.09001 * 110.39738 * 48.51503 * 25 23 21 41 41 H 1.09001 * 110.40296 * 170.93053 * 25 23 21 42 42 H 1.09002 * 110.40455 * 241.20856 * 26 25 23 43 43 H 1.08997 * 110.40078 * 118.78703 * 26 25 23 44 44 H 1.08992 * 112.02927 * 189.69228 * 29 27 19 45 45 H 1.09001 * 112.02460 * 63.17151 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2528 6 6 4.1051 -0.8921 -1.3428 7 6 5.5009 -1.2978 -0.9450 8 1 6.2197 -0.5460 -0.6546 9 6 5.8605 -2.6289 -0.9528 10 7 7.0787 -2.9829 -0.6060 11 14 4.6178 -3.9292 -1.4571 12 1 4.7035 -4.1538 -2.9225 13 1 4.9118 -5.1980 -0.7438 14 1 3.2501 -3.4694 -1.1060 15 6 4.2615 1.3338 -2.3218 16 8 4.1539 2.5395 -2.2473 17 6 4.7138 0.6957 -3.6099 18 1 5.3287 -0.1976 -3.5007 19 6 3.7344 0.7708 -4.8210 20 1 2.7414 1.2030 -4.6967 21 6 5.0221 1.6244 -4.7862 22 1 5.0051 2.7051 -4.6460 23 6 5.9070 1.0498 -5.9342 24 1 6.9722 1.2724 -5.8717 25 6 5.1800 1.4856 -7.2430 26 6 3.8921 0.6316 -7.2776 27 6 3.9622 -0.2393 -5.9867 28 1 3.3407 -1.1346 -5.9698 29 6 5.5109 -0.4678 -5.8741 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8514 0.5681 0.8409 36 1 3.9785 2.1765 0.0890 37 1 3.3852 -1.3629 -0.6735 38 1 3.9120 -1.2114 -2.3669 39 1 7.3316 -3.9194 -0.6112 40 1 4.9318 2.5463 -7.2045 41 1 5.8016 1.2713 -8.1124 42 1 3.8804 -0.0027 -8.1640 43 1 3.0106 1.2724 -7.2561 44 1 5.9044 -1.0270 -6.7228 45 1 5.7886 -0.9257 -4.9247 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931892031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:41 Heat of formation + Delta-G solvation = -58.396692 kcal Electronic energy + Delta-G solvation = -24950.446294 eV Core-core repulsion = 21547.446584 eV Total energy + Delta-G solvation = -3402.999710 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.21785 -40.40748 -38.71432 -36.71404 -34.64030 -34.31361 -31.62650 -29.84365 -29.44318 -28.85876 -27.27853 -25.77716 -24.38290 -23.39184 -22.49988 -20.78269 -19.52987 -19.39321 -19.07796 -18.40162 -17.52628 -17.23503 -16.86103 -16.64299 -16.32547 -16.19837 -15.80379 -15.27847 -15.03743 -14.51872 -13.99868 -13.80666 -13.68039 -13.48399 -13.22401 -13.11331 -12.83271 -12.70917 -12.50925 -12.38857 -12.32658 -12.15188 -12.07108 -12.01427 -11.96644 -11.78358 -11.69608 -11.17048 -10.85824 -10.79456 -10.63995 -10.58703 -10.49083 -9.45389 -8.30322 -6.36856 1.38030 1.40155 1.50351 1.52137 2.18261 2.34784 2.80637 2.89645 3.04352 3.29618 3.58509 3.61758 3.95469 4.00010 4.07389 4.10577 4.18421 4.21937 4.34549 4.43283 4.45299 4.47523 4.51519 4.54220 4.59847 4.63020 4.70971 4.76354 4.82071 4.86723 4.91177 5.00469 5.08276 5.08730 5.18595 5.23672 5.27020 5.29362 5.44224 5.46256 5.53566 5.69220 6.16512 6.25013 6.59872 6.68348 7.22196 7.32809 8.86084 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.010910 B = 0.006838 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.879976 B = 4093.565507 C = 5420.253688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.410 6.410 3 C 0.060 3.940 4 C 0.113 3.887 5 N -0.585 5.585 6 C 0.231 3.769 7 C -0.540 4.540 8 H 0.027 0.973 9 C 0.023 3.977 10 N -0.941 5.941 11 Si 0.936 3.064 12 H -0.257 1.257 13 H -0.283 1.283 14 H -0.245 1.245 15 C 0.542 3.458 16 O -0.596 6.596 17 C -0.183 4.183 18 H 0.118 0.882 19 C -0.123 4.123 20 H 0.112 0.888 21 C -0.126 4.126 22 H 0.106 0.894 23 C -0.075 4.075 24 H 0.102 0.898 25 C -0.108 4.108 26 C -0.107 4.107 27 C -0.071 4.071 28 H 0.109 0.891 29 C -0.143 4.143 30 H 0.043 0.957 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.042 0.958 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.046 0.954 38 H 0.037 0.963 39 H 0.268 0.732 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.770 5.214 -10.742 16.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C -0.017 4.017 4 C -0.010 4.010 5 N -0.314 5.314 6 C 0.109 3.891 7 C -0.579 4.579 8 H 0.046 0.954 9 C -0.176 4.176 10 N -0.581 5.581 11 Si 0.759 3.241 12 H -0.182 1.182 13 H -0.208 1.208 14 H -0.168 1.168 15 C 0.332 3.668 16 O -0.479 6.479 17 C -0.204 4.204 18 H 0.136 0.864 19 C -0.142 4.142 20 H 0.130 0.870 21 C -0.144 4.144 22 H 0.124 0.876 23 C -0.093 4.093 24 H 0.120 0.880 25 C -0.146 4.146 26 C -0.145 4.145 27 C -0.089 4.089 28 H 0.127 0.873 29 C -0.180 4.180 30 H 0.062 0.938 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.088 0.912 44 H 0.110 0.890 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.625 5.516 -10.659 16.708 hybrid contribution 0.058 -0.407 0.762 0.866 sum -11.567 5.109 -9.897 16.058 Atomic orbital electron populations 1.22903 0.79748 1.03573 1.00721 1.87958 1.21367 1.28143 1.95516 1.22873 0.92942 0.84862 1.01048 1.21533 0.93365 0.99360 0.86760 1.47797 1.63962 1.08394 1.11219 1.19495 0.95283 0.76619 0.97688 1.21539 0.97065 0.92950 1.46341 0.95423 1.25720 0.96998 1.00622 0.94272 1.70053 1.20535 1.18143 1.49356 0.85869 0.80462 0.78173 0.79617 1.18175 1.20834 1.16810 1.19919 0.75668 0.85871 0.85309 1.90535 1.56866 1.15348 1.85174 1.22747 1.06363 1.03342 0.87925 0.86419 1.24133 0.94170 1.01909 0.93969 0.86973 1.23604 0.99052 0.96818 0.94962 0.87616 1.23262 0.98070 0.94637 0.93355 0.88017 1.22494 0.96364 0.99809 0.95886 1.22486 0.97964 0.97809 0.96199 1.23258 0.96104 0.96616 0.92941 0.87288 1.23784 0.96042 0.96445 1.01706 0.93846 0.88880 0.92473 0.89833 0.93962 0.90156 0.89281 0.93641 0.94500 0.92256 0.91457 0.89718 0.89536 0.91200 0.88988 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.41 -13.59 9.53 -148.98 -1.42 -15.01 16 3 C 0.06 1.89 6.28 71.98 0.45 2.34 16 4 C 0.11 4.31 5.81 86.38 0.50 4.81 16 5 N -0.59 -25.79 2.42 -826.16 -2.00 -27.79 16 6 C 0.23 10.92 3.69 85.63 0.32 11.23 16 7 C -0.54 -30.44 9.63 25.60 0.25 -30.20 16 8 H 0.03 1.78 8.06 -2.92 -0.02 1.76 16 9 C 0.02 1.28 5.47 84.66 0.46 1.75 16 10 N -0.94 -57.32 13.96 21.45 0.30 -57.02 16 11 Si 0.94 41.96 27.47 68.60 1.88 43.84 16 12 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 13 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 14 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 15 C 0.54 23.88 7.46 87.65 0.65 24.53 16 16 O -0.60 -27.69 15.93 -3.03 -0.05 -27.73 16 17 C -0.18 -7.16 4.10 -10.52 -0.04 -7.21 16 18 H 0.12 5.17 4.94 -2.39 -0.01 5.16 16 19 C -0.12 -3.78 6.32 -8.24 -0.05 -3.83 16 20 H 0.11 3.38 8.14 -2.38 -0.02 3.36 16 21 C -0.13 -4.08 5.82 -9.26 -0.05 -4.13 16 22 H 0.11 3.63 7.83 -2.39 -0.02 3.61 16 23 C -0.08 -1.96 5.17 -7.38 -0.04 -2.00 16 24 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 25 C -0.11 -2.11 6.21 32.14 0.20 -1.91 16 26 C -0.11 -2.01 6.21 32.13 0.20 -1.81 16 27 C -0.07 -1.75 5.18 -7.40 -0.04 -1.79 16 28 H 0.11 2.48 8.14 -2.38 -0.02 2.46 16 29 C -0.14 -3.86 6.23 33.37 0.21 -3.66 16 30 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.09 1.92 8.14 -2.39 -0.02 1.91 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.08 3.16 8.07 -2.39 -0.02 3.14 16 36 H 0.09 3.35 7.42 -2.38 -0.02 3.33 16 37 H 0.05 2.16 6.18 -2.39 -0.01 2.15 16 38 H 0.04 1.69 6.07 -2.39 -0.01 1.68 16 39 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 40 H 0.07 1.30 8.04 -2.39 -0.02 1.28 16 41 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 42 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 1.25 8.04 -2.39 -0.02 1.23 16 44 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.05 1.78 5.94 -2.39 -0.01 1.76 16 Total: -1.00 -69.39 353.13 3.89 -65.50 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 0.91 Total: 28.23 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 4.26 Total: -10.01 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -1.70 Total: -84.81 kcal Atomic # 8 Polarization: -41.28 SS G_CDS: -1.47 Total: -42.75 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 1.88 Total: 43.84 kcal Total: -69.39 3.89 -65.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931892031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.101 kcal (2) G-P(sol) polarization free energy of solvation -69.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds