Wall clock time and date at job start Tue Mar 31 2020 06:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35902 * 116.99911 * 2 1 4 4 C 1.38732 * 120.05794 * 179.97438 * 3 2 1 5 5 C 1.38143 * 119.94370 * 180.30292 * 4 3 2 6 6 C 1.38264 * 120.05392 * 359.41624 * 5 4 3 7 7 C 1.50702 * 119.94376 * 180.30411 * 6 5 4 8 8 N 1.46906 * 109.47108 * 270.30157 * 7 6 5 9 9 C 1.46906 * 111.00080 * 190.00132 * 8 7 6 10 10 C 1.52996 * 109.47118 * 164.43659 * 9 8 7 11 11 C 1.50700 * 109.47147 * 180.36679 * 10 9 8 12 12 H 1.08008 * 119.99695 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00164 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99979 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99922 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47359 * 59.99698 * 15 13 11 17 17 H 1.48499 * 109.46884 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46696 * 299.99374 * 15 13 11 19 19 C 1.46900 * 110.99849 * 66.04797 * 8 7 6 20 20 C 1.52992 * 109.47506 * 62.72833 * 19 8 7 21 21 C 1.53002 * 109.47418 * 183.78209 * 20 19 8 22 22 O 1.42900 * 109.47303 * 179.97438 * 21 20 19 23 23 C 1.38265 * 120.11336 * 0.60524 * 6 5 4 24 24 C 1.38136 * 120.05574 * 359.67869 * 23 6 5 25 25 H 1.09006 * 109.46807 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47334 * 299.99978 * 1 2 3 27 27 H 1.09007 * 109.47215 * 60.00214 * 1 2 3 28 28 H 1.07993 * 120.02830 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.97229 * 179.69942 * 5 4 3 30 30 H 1.08996 * 109.47318 * 30.30121 * 7 6 5 31 31 H 1.08997 * 109.47657 * 150.30197 * 7 6 5 32 32 H 1.09002 * 109.46557 * 284.43506 * 9 8 7 33 33 H 1.08994 * 109.46749 * 44.43473 * 9 8 7 34 34 H 1.08993 * 109.46965 * 300.36770 * 10 9 8 35 35 H 1.08998 * 109.47134 * 60.36785 * 10 9 8 36 36 H 0.97002 * 120.00209 * 180.02562 * 14 13 11 37 37 H 1.09005 * 109.46628 * 182.73329 * 19 8 7 38 38 H 1.09004 * 109.46857 * 302.72350 * 19 8 7 39 39 H 1.09001 * 109.47216 * 303.78344 * 20 19 8 40 40 H 1.09002 * 109.47376 * 63.78011 * 20 19 8 41 41 H 1.09001 * 109.46512 * 300.00230 * 21 20 19 42 42 H 1.09002 * 109.47008 * 59.99577 * 21 20 19 43 43 H 0.96700 * 113.99863 * 179.97438 * 22 21 20 44 44 H 1.08003 * 119.97062 * 179.69659 * 23 6 5 45 45 H 1.08003 * 120.03309 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0559 2.5170 0.0069 6 6 3.3017 3.6758 0.0005 7 6 3.9858 5.0186 0.0005 8 7 4.2080 5.4550 1.3855 9 6 4.6535 6.8541 1.4316 10 6 4.5031 7.3905 2.8566 11 6 4.9517 8.8285 2.9020 12 1 5.3087 9.3114 2.0043 13 6 4.9073 9.5273 4.0897 14 7 4.4730 8.9391 5.1829 15 14 5.4626 11.3100 4.1458 16 1 4.6263 12.1183 3.2224 17 1 5.3167 11.8305 5.5289 18 1 6.8856 11.3983 3.7306 19 6 5.1661 4.5747 2.0675 20 6 6.5224 4.6547 1.3641 21 6 7.4937 3.6681 2.0153 22 8 8.7603 3.7425 1.3579 23 6 1.9209 3.6048 0.0004 24 6 1.2914 2.3752 -0.0001 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8901 28 1 4.0208 0.3801 0.0005 29 1 5.1344 2.5752 0.0122 30 1 4.9438 4.9384 -0.5133 31 1 3.3579 5.7464 -0.5134 32 1 5.6993 6.9125 1.1299 33 1 4.0454 7.4516 0.7525 34 1 3.4585 7.3260 3.1607 35 1 5.1163 6.7971 3.5348 36 1 4.4414 9.4309 6.0184 37 1 5.2755 4.8912 3.1048 38 1 4.8012 3.5480 2.0375 39 1 6.4007 4.4030 0.3106 40 1 6.9184 5.6664 1.4525 41 1 7.6153 3.9199 3.0689 42 1 7.0977 2.6565 1.9269 43 1 9.4270 3.1427 1.7198 44 1 1.3340 4.5115 0.0003 45 1 0.2128 2.3201 -0.0006 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934501553.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:01 Heat of formation + Delta-G solvation = -66.848272 kcal Electronic energy + Delta-G solvation = -23540.651471 eV Core-core repulsion = 20137.285273 eV Total energy + Delta-G solvation = -3403.366198 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.23309 -38.65300 -37.15830 -36.34863 -33.16977 -31.78909 -31.01901 -30.95858 -28.90144 -27.58136 -25.68483 -24.95184 -22.97808 -22.50148 -21.91743 -20.71808 -19.17516 -18.19563 -17.17226 -16.52466 -16.27622 -15.86573 -15.69438 -15.41544 -15.17267 -14.50555 -14.46549 -14.20560 -13.84646 -13.49028 -13.23903 -12.94239 -12.72234 -12.60207 -12.15240 -12.11996 -11.97693 -11.52421 -11.32524 -11.16267 -11.07964 -10.89963 -10.77591 -10.73825 -10.54677 -10.46117 -9.94736 -9.66009 -9.38466 -9.11351 -8.95173 -8.30502 -8.12119 -7.63440 -5.97104 -3.99385 1.36574 1.45110 3.16613 3.34967 3.39228 3.41662 3.74284 4.28404 4.45585 4.69712 4.74129 4.84926 4.94721 4.96514 5.02374 5.11374 5.24931 5.33487 5.34975 5.38884 5.41751 5.55812 5.56240 5.68782 5.70852 5.84076 5.85047 6.07157 6.08900 6.23004 6.27442 6.29765 6.38728 6.56969 6.66421 6.75608 6.77012 7.01517 7.32678 7.51048 7.55435 7.67318 7.81274 7.93691 8.11682 8.46199 9.07919 9.64086 11.14135 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015286 B = 0.003565 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.296432 B = 7852.550408 C = 9127.518226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.117 3.883 4 C -0.154 4.154 5 C -0.076 4.076 6 C -0.100 4.100 7 C 0.087 3.913 8 N -0.525 5.525 9 C 0.056 3.944 10 C 0.032 3.968 11 C -0.522 4.522 12 H 0.053 0.947 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.891 3.109 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.056 3.944 20 C -0.161 4.161 21 C 0.080 3.920 22 O -0.577 6.577 23 C -0.059 4.059 24 C -0.208 4.208 25 H 0.097 0.903 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.029 0.971 33 H 0.059 0.941 34 H 0.023 0.977 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.048 0.952 42 H 0.041 0.959 43 H 0.375 0.625 44 H 0.127 0.873 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.098 -17.702 -10.401 20.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.073 3.927 4 C -0.172 4.172 5 C -0.095 4.095 6 C -0.101 4.101 7 C -0.041 4.041 8 N -0.248 5.248 9 C -0.070 4.070 10 C -0.005 4.005 11 C -0.561 4.561 12 H 0.071 0.929 13 C -0.142 4.142 14 N -0.532 5.532 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.073 4.073 20 C -0.200 4.200 21 C 0.002 3.998 22 O -0.381 6.381 23 C -0.077 4.077 24 C -0.227 4.227 25 H 0.115 0.885 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.144 0.856 29 H 0.143 0.857 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.042 0.958 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.221 0.779 44 H 0.145 0.855 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.845 -17.412 -10.315 20.600 hybrid contribution 1.055 0.764 0.126 1.309 sum -2.790 -16.648 -10.189 19.717 Atomic orbital electron populations 1.23019 0.78631 1.03631 1.01407 1.86038 1.21216 1.27267 1.89037 1.19006 0.92348 0.83985 0.97402 1.20334 0.91297 0.98422 1.07193 1.20907 0.99728 0.91126 0.97708 1.19770 0.93616 0.94911 1.01817 1.21090 0.98570 0.93018 0.91385 1.62418 1.45342 1.03849 1.13153 1.22460 0.97270 0.85172 1.02116 1.19032 0.97776 0.94619 0.89119 1.21166 1.43127 0.97027 0.94756 0.92905 1.24977 0.95407 0.98109 0.95745 1.69962 1.46843 1.36767 0.99669 0.86681 0.79209 0.85269 0.76964 1.20259 1.21313 1.20305 1.22142 0.88194 0.97565 0.99374 1.22252 0.96368 1.00773 1.00644 1.22134 0.83618 0.98194 0.95833 1.86503 1.22912 1.66614 1.62111 1.20855 0.94069 0.96958 0.95852 1.21205 0.99816 0.92386 1.09270 0.88502 0.92605 0.92778 0.85603 0.85668 0.93974 0.90295 0.95269 0.92261 0.95836 0.96592 0.92992 0.89712 0.91219 0.91621 0.90173 0.93348 0.94048 0.77936 0.85535 0.85727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.69 10.50 -19.43 -0.20 -3.89 16 3 C 0.12 1.46 6.69 -39.21 -0.26 1.20 16 4 C -0.15 -1.88 9.99 -39.43 -0.39 -2.28 16 5 C -0.08 -0.96 7.90 -39.61 -0.31 -1.27 16 6 C -0.10 -1.37 4.90 -104.60 -0.51 -1.88 16 7 C 0.09 1.28 4.92 -4.97 -0.02 1.25 16 8 N -0.53 -9.29 4.66 -236.07 -1.10 -10.39 16 9 C 0.06 1.16 4.76 -3.82 -0.02 1.15 16 10 C 0.03 0.83 5.01 -27.89 -0.14 0.69 16 11 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 12 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 15 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 C 0.06 0.91 4.81 -3.83 -0.02 0.89 16 20 C -0.16 -2.46 4.77 -26.73 -0.13 -2.58 16 21 C 0.08 1.05 7.05 37.16 0.26 1.31 16 22 O -0.58 -7.61 13.66 -35.23 -0.48 -8.09 16 23 C -0.06 -0.76 9.69 -39.61 -0.38 -1.15 16 24 C -0.21 -2.48 9.04 -39.43 -0.36 -2.84 16 25 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 27 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 28 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.13 1.45 7.24 -52.49 -0.38 1.07 16 30 H 0.04 0.60 5.96 -51.93 -0.31 0.29 16 31 H 0.08 1.13 7.81 -51.93 -0.41 0.72 16 32 H 0.03 0.60 5.89 -51.93 -0.31 0.30 16 33 H 0.06 1.21 7.82 -51.93 -0.41 0.81 16 34 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.02 0.43 6.74 -51.93 -0.35 0.08 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.08 1.57 6.65 -51.93 -0.35 1.22 16 38 H 0.07 1.04 5.95 -51.93 -0.31 0.73 16 39 H 0.07 0.96 5.60 -51.93 -0.29 0.67 16 40 H 0.08 1.43 6.39 -51.93 -0.33 1.10 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.37 3.04 9.12 45.56 0.42 3.45 16 44 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 45 H 0.12 1.21 6.30 -52.48 -0.33 0.88 16 LS Contribution 358.37 15.07 5.40 5.40 Total: -1.00 -32.64 358.37 -8.60 -41.23 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.22 Total: 2.97 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -1.71 Total: -17.79 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: -0.36 Total: -36.58 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -0.69 Total: -11.98 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.64 -8.60 -41.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934501553.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.614 kcal (2) G-P(sol) polarization free energy of solvation -32.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds