Wall clock time and date at job start Tue Mar 31 2020 06:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35902 * 116.99911 * 2 1 4 4 C 1.38732 * 120.05794 * 179.97438 * 3 2 1 5 5 C 1.38143 * 119.94370 * 180.30292 * 4 3 2 6 6 C 1.38264 * 120.05392 * 359.41624 * 5 4 3 7 7 C 1.50702 * 119.94376 * 180.30411 * 6 5 4 8 8 N 1.46906 * 109.47108 * 270.30157 * 7 6 5 9 9 C 1.46906 * 111.00080 * 190.00132 * 8 7 6 10 10 C 1.52996 * 109.47118 * 164.43659 * 9 8 7 11 11 C 1.50700 * 109.47147 * 180.36679 * 10 9 8 12 12 H 1.08008 * 119.99695 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00164 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99979 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99922 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47359 * 59.99698 * 15 13 11 17 17 H 1.48499 * 109.46884 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46696 * 299.99374 * 15 13 11 19 19 C 1.46900 * 110.99849 * 66.04797 * 8 7 6 20 20 C 1.52992 * 109.47506 * 62.72833 * 19 8 7 21 21 C 1.53002 * 109.47418 * 183.78209 * 20 19 8 22 22 O 1.42900 * 109.47303 * 179.97438 * 21 20 19 23 23 C 1.38265 * 120.11336 * 0.60524 * 6 5 4 24 24 C 1.38136 * 120.05574 * 359.67869 * 23 6 5 25 25 H 1.09006 * 109.46807 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47334 * 299.99978 * 1 2 3 27 27 H 1.09007 * 109.47215 * 60.00214 * 1 2 3 28 28 H 1.07993 * 120.02830 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.97229 * 179.69942 * 5 4 3 30 30 H 1.08996 * 109.47318 * 30.30121 * 7 6 5 31 31 H 1.08997 * 109.47657 * 150.30197 * 7 6 5 32 32 H 1.09002 * 109.46557 * 284.43506 * 9 8 7 33 33 H 1.08994 * 109.46749 * 44.43473 * 9 8 7 34 34 H 1.08993 * 109.46965 * 300.36770 * 10 9 8 35 35 H 1.08998 * 109.47134 * 60.36785 * 10 9 8 36 36 H 0.97002 * 120.00209 * 180.02562 * 14 13 11 37 37 H 1.09005 * 109.46628 * 182.73329 * 19 8 7 38 38 H 1.09004 * 109.46857 * 302.72350 * 19 8 7 39 39 H 1.09001 * 109.47216 * 303.78344 * 20 19 8 40 40 H 1.09002 * 109.47376 * 63.78011 * 20 19 8 41 41 H 1.09001 * 109.46512 * 300.00230 * 21 20 19 42 42 H 1.09002 * 109.47008 * 59.99577 * 21 20 19 43 43 H 0.96700 * 113.99863 * 179.97438 * 22 21 20 44 44 H 1.08003 * 119.97062 * 179.69659 * 23 6 5 45 45 H 1.08003 * 120.03309 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0559 2.5170 0.0069 6 6 3.3017 3.6758 0.0005 7 6 3.9858 5.0186 0.0005 8 7 4.2080 5.4550 1.3855 9 6 4.6535 6.8541 1.4316 10 6 4.5031 7.3905 2.8566 11 6 4.9517 8.8285 2.9020 12 1 5.3087 9.3114 2.0043 13 6 4.9073 9.5273 4.0897 14 7 4.4730 8.9391 5.1829 15 14 5.4626 11.3100 4.1458 16 1 4.6263 12.1183 3.2224 17 1 5.3167 11.8305 5.5289 18 1 6.8856 11.3983 3.7306 19 6 5.1661 4.5747 2.0675 20 6 6.5224 4.6547 1.3641 21 6 7.4937 3.6681 2.0153 22 8 8.7603 3.7425 1.3579 23 6 1.9209 3.6048 0.0004 24 6 1.2914 2.3752 -0.0001 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8901 28 1 4.0208 0.3801 0.0005 29 1 5.1344 2.5752 0.0122 30 1 4.9438 4.9384 -0.5133 31 1 3.3579 5.7464 -0.5134 32 1 5.6993 6.9125 1.1299 33 1 4.0454 7.4516 0.7525 34 1 3.4585 7.3260 3.1607 35 1 5.1163 6.7971 3.5348 36 1 4.4414 9.4309 6.0184 37 1 5.2755 4.8912 3.1048 38 1 4.8012 3.5480 2.0375 39 1 6.4007 4.4030 0.3106 40 1 6.9184 5.6664 1.4525 41 1 7.6153 3.9199 3.0689 42 1 7.0977 2.6565 1.9269 43 1 9.4270 3.1427 1.7198 44 1 1.3340 4.5115 0.0003 45 1 0.2128 2.3201 -0.0006 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934501553.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:00 Heat of formation + Delta-G solvation = -89.880570 kcal Electronic energy + Delta-G solvation = -23541.650226 eV Core-core repulsion = 20137.285273 eV Total energy + Delta-G solvation = -3404.364953 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.16396 -39.82687 -38.15270 -37.49005 -35.23967 -32.91086 -32.60155 -31.91477 -30.39706 -28.39260 -26.86843 -26.67814 -24.37704 -23.46560 -23.29780 -21.97153 -20.63078 -19.04642 -18.56988 -18.21487 -17.28097 -17.03864 -16.62923 -16.58632 -16.46522 -16.23730 -15.82170 -15.21762 -14.79020 -14.64198 -14.41268 -14.25242 -14.18824 -13.89694 -13.50341 -13.41005 -13.20730 -12.88135 -12.77519 -12.61094 -12.53051 -12.31717 -12.02289 -12.01959 -11.78150 -11.68970 -11.55939 -11.30444 -11.20420 -10.85736 -10.50840 -9.89651 -9.20195 -8.93801 -8.18106 -6.29075 0.42235 0.47501 1.40132 1.43215 1.50949 2.40765 2.41653 2.73362 3.15105 3.23517 3.41950 3.83579 3.92096 3.94711 4.01339 4.24173 4.24564 4.34923 4.40751 4.41374 4.43982 4.49024 4.51579 4.59241 4.63170 4.73773 4.75170 4.77906 4.80790 4.88522 5.11613 5.14677 5.17991 5.28339 5.34174 5.43014 5.49815 5.69062 5.75809 5.81106 5.84399 6.13634 6.30764 6.36366 6.48365 6.88254 6.90607 7.39676 8.93640 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015286 B = 0.003565 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.296432 B = 7852.550408 C = 9127.518226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.113 3.887 4 C -0.161 4.161 5 C -0.076 4.076 6 C -0.116 4.116 7 C 0.092 3.908 8 N -0.537 5.537 9 C 0.074 3.926 10 C 0.042 3.958 11 C -0.544 4.544 12 H 0.058 0.942 13 C 0.003 3.997 14 N -0.931 5.931 15 Si 0.963 3.037 16 H -0.266 1.266 17 H -0.283 1.283 18 H -0.268 1.268 19 C 0.063 3.937 20 C -0.153 4.153 21 C 0.084 3.916 22 O -0.594 6.594 23 C -0.070 4.070 24 C -0.210 4.210 25 H 0.120 0.880 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.141 0.859 29 H 0.136 0.864 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.029 0.971 33 H 0.062 0.938 34 H -0.010 1.010 35 H -0.009 1.009 36 H 0.263 0.737 37 H 0.054 0.946 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.047 0.953 41 H 0.043 0.957 42 H 0.069 0.931 43 H 0.397 0.603 44 H 0.129 0.871 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.004 -18.572 -11.569 22.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.067 3.933 4 C -0.179 4.179 5 C -0.094 4.094 6 C -0.117 4.117 7 C -0.035 4.035 8 N -0.260 5.260 9 C -0.053 4.053 10 C 0.005 3.995 11 C -0.583 4.583 12 H 0.077 0.923 13 C -0.195 4.195 14 N -0.571 5.571 15 Si 0.787 3.213 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.193 1.193 19 C -0.065 4.065 20 C -0.192 4.192 21 C 0.006 3.994 22 O -0.403 6.403 23 C -0.089 4.089 24 C -0.228 4.228 25 H 0.138 0.862 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.159 0.841 29 H 0.153 0.847 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.009 0.991 35 H 0.010 0.990 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.087 0.913 43 H 0.246 0.754 44 H 0.146 0.854 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.744 -18.308 -11.497 21.941 hybrid contribution 0.960 0.907 0.487 1.407 sum -2.785 -17.402 -11.010 20.780 Atomic orbital electron populations 1.23315 0.76681 1.05474 1.02089 1.86028 1.23281 1.26787 1.88797 1.19200 0.92712 0.84520 0.96843 1.20565 0.91657 0.98847 1.06847 1.20997 1.00202 0.90892 0.97354 1.19704 0.93982 0.94473 1.03503 1.21068 0.99160 0.93924 0.89299 1.62287 1.45745 1.02404 1.15559 1.22055 0.97417 0.87265 0.98547 1.18836 0.94887 0.93955 0.91860 1.21610 1.43180 0.98273 0.95192 0.92328 1.25926 0.95308 1.03037 0.95273 1.70103 1.47891 1.38763 1.00328 0.85536 0.79116 0.79334 0.77268 1.19110 1.20814 1.19324 1.22028 0.88886 0.97920 0.97665 1.22107 0.96094 0.99697 1.01293 1.22052 0.83498 0.98798 0.95092 1.86437 1.23461 1.67834 1.62553 1.20993 0.94078 0.97650 0.96140 1.21406 1.00951 0.91829 1.08656 0.86227 0.92211 0.91750 0.84121 0.84670 0.93207 0.90075 0.95277 0.91980 0.99130 0.99021 0.92824 0.92728 0.89339 0.90589 0.93379 0.93879 0.91294 0.75352 0.85352 0.83747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -7.00 10.50 -92.45 -0.97 -7.97 16 3 C 0.11 2.60 6.69 22.51 0.15 2.75 16 4 C -0.16 -3.62 9.99 22.37 0.22 -3.40 16 5 C -0.08 -1.78 7.90 22.25 0.18 -1.60 16 6 C -0.12 -3.03 4.90 -19.85 -0.10 -3.13 16 7 C 0.09 2.66 4.92 85.56 0.42 3.08 16 8 N -0.54 -19.28 4.66 -900.79 -4.20 -23.47 16 9 C 0.07 3.16 4.76 86.30 0.41 3.57 16 10 C 0.04 2.28 5.01 29.85 0.15 2.43 16 11 C -0.54 -31.49 9.11 25.60 0.23 -31.25 16 12 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 13 C 0.00 0.15 5.46 84.65 0.46 0.61 16 14 N -0.93 -57.50 13.29 21.45 0.28 -57.21 16 15 Si 0.96 44.85 29.54 68.60 2.03 46.87 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 C 0.06 2.09 4.81 86.30 0.42 2.50 16 20 C -0.15 -4.62 4.77 30.59 0.15 -4.47 16 21 C 0.08 2.09 7.05 71.98 0.51 2.59 16 22 O -0.59 -14.73 13.66 -148.98 -2.04 -16.77 16 23 C -0.07 -1.76 9.69 22.25 0.22 -1.54 16 24 C -0.21 -4.68 9.04 22.37 0.20 -4.48 16 25 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.06 0.72 7.66 -2.39 -0.02 0.70 16 27 H 0.06 0.69 7.66 -2.38 -0.02 0.67 16 28 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 29 H 0.14 2.82 7.24 -2.91 -0.02 2.80 16 30 H 0.05 1.36 5.96 -2.39 -0.01 1.35 16 31 H 0.08 2.28 7.81 -2.39 -0.02 2.26 16 32 H 0.03 1.24 5.89 -2.39 -0.01 1.22 16 33 H 0.06 2.58 7.82 -2.39 -0.02 2.56 16 34 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 35 H -0.01 -0.50 6.74 -2.39 -0.02 -0.51 16 36 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 37 H 0.05 2.12 6.65 -2.38 -0.02 2.10 16 38 H 0.09 2.58 5.95 -2.38 -0.01 2.56 16 39 H 0.08 2.12 5.60 -2.39 -0.01 2.11 16 40 H 0.05 1.76 6.39 -2.39 -0.02 1.74 16 41 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.40 5.64 9.12 -74.06 -0.68 4.97 16 44 H 0.13 3.08 8.06 -2.91 -0.02 3.06 16 45 H 0.14 2.52 6.30 -2.91 -0.02 2.50 16 Total: -1.00 -71.11 358.37 0.15 -70.96 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.31 Total: 18.58 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 4.73 Total: -30.98 kcal Atomic # 7 Polarization: -76.77 SS G_CDS: -3.91 Total: -80.69 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -3.01 Total: -24.74 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -71.11 0.15 -70.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934501553.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.920 kcal (2) G-P(sol) polarization free energy of solvation -71.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds