Wall clock time and date at job start Tue Mar 31 2020 07:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.64434 * 34.30546 * 10 9 7 12 12 C 1.55150 * 110.72288 * 271.15689 * 10 9 7 13 13 C 1.54914 * 101.58287 * 206.13858 * 12 10 9 14 14 N 1.47415 * 104.83137 * 37.00822 * 13 12 10 15 15 C 1.34780 * 125.64722 * 155.83943 * 14 13 12 16 16 O 1.21283 * 120.00125 * 180.02562 * 15 14 13 17 17 C 1.50704 * 119.99959 * 0.02562 * 15 14 13 18 18 H 1.09000 * 109.57677 * 59.74332 * 17 15 14 19 19 C 1.53141 * 109.58106 * 299.34727 * 17 15 14 20 20 N 1.46911 * 109.36641 * 240.21355 * 19 17 15 21 21 C 1.46940 * 111.06043 * 61.98722 * 20 19 17 22 22 C 1.53121 * 109.35026 * 298.03377 * 21 20 19 23 23 C 1.53386 * 108.84773 * 359.94859 * 22 21 20 24 24 C 1.53385 * 108.60248 * 301.07501 * 23 22 21 25 25 C 1.46942 * 111.05361 * 297.98597 * 20 19 17 26 26 C 1.47317 * 108.73898 * 335.71776 * 14 13 12 27 27 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 29 29 H 1.09000 * 111.00827 * 324.21376 * 12 10 9 30 30 H 1.08999 * 111.00790 * 88.06546 * 12 10 9 31 31 H 1.08998 * 110.36748 * 155.85045 * 13 12 10 32 32 H 1.09005 * 110.36345 * 278.16933 * 13 12 10 33 33 H 1.08999 * 109.48287 * 0.17320 * 19 17 15 34 34 H 1.08992 * 109.48896 * 120.23596 * 19 17 15 35 35 H 1.09004 * 109.48761 * 178.07364 * 21 20 19 36 36 H 1.08994 * 109.49201 * 58.00491 * 21 20 19 37 37 H 1.09007 * 109.57615 * 240.13810 * 22 21 20 38 38 H 1.09006 * 109.57469 * 119.76119 * 22 21 20 39 39 H 1.08999 * 110.11492 * 179.62738 * 23 22 21 40 40 H 1.09003 * 109.57807 * 178.72472 * 24 23 22 41 41 H 1.09004 * 109.57235 * 299.10196 * 24 23 22 42 42 H 1.08994 * 109.49632 * 181.92151 * 25 20 19 43 43 H 1.09004 * 109.49429 * 301.99800 * 25 20 19 44 44 H 1.09000 * 110.05964 * 241.87032 * 26 14 13 45 45 H 1.08999 * 109.85011 * 120.61311 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9800 -3.5681 0.5754 12 6 2.3581 -4.1175 -1.4503 13 6 2.4681 -5.6524 -1.2727 14 7 1.4459 -5.9900 -0.2657 15 6 0.8564 -7.1930 -0.1175 16 8 0.0239 -7.3578 0.7490 17 6 1.2316 -8.3333 -1.0286 18 1 2.2962 -8.5452 -0.9290 19 6 0.9138 -7.9576 -2.4787 20 7 -0.0586 -8.9123 -3.0275 21 6 -1.3236 -8.8651 -2.2813 22 6 -1.0693 -9.2663 -0.8256 23 6 0.4219 -9.5803 -0.6515 24 6 0.7980 -10.7164 -1.6110 25 6 0.4913 -10.2748 -3.0448 26 6 1.1768 -4.7961 0.5543 27 1 -0.4850 0.8401 0.0004 28 1 0.3557 -2.3880 0.0005 29 1 1.5375 -3.8595 -2.1197 30 1 3.2983 -3.6971 -1.8073 31 1 2.2556 -6.1594 -2.2138 32 1 3.4605 -5.9223 -0.9112 33 1 0.4938 -6.9522 -2.5101 34 1 1.8282 -7.9887 -3.0711 35 1 -2.0365 -9.5570 -2.7300 36 1 -1.7280 -7.8535 -2.3145 37 1 -1.6595 -10.1498 -0.5818 38 1 -1.3490 -8.4447 -0.1662 39 1 0.6275 -9.8625 0.3811 40 1 1.8612 -10.9374 -1.5164 41 1 0.2155 -11.6056 -1.3702 42 1 -0.2364 -10.9552 -3.4870 43 1 1.4083 -10.2895 -3.6338 44 1 1.4344 -4.9916 1.5952 45 1 0.1247 -4.5225 0.4757 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968702775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:20 Heat of formation + Delta-G solvation = -8.712792 kcal Electronic energy + Delta-G solvation = -24723.426781 eV Core-core repulsion = 21354.874277 eV Total energy + Delta-G solvation = -3368.552503 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.41217 -39.14582 -37.20297 -34.21823 -32.37867 -32.11762 -31.10391 -30.93152 -29.53550 -27.66545 -24.61736 -23.51033 -23.11457 -23.04220 -22.44543 -20.10769 -19.28747 -17.68372 -17.43746 -17.22220 -16.59968 -16.42605 -15.80387 -15.48530 -14.63933 -14.37500 -13.98284 -13.57607 -13.33349 -13.14413 -13.07038 -12.71871 -12.49475 -12.41221 -12.31241 -12.26788 -12.14509 -11.74863 -11.64104 -11.57334 -11.22147 -11.10018 -10.84687 -10.73053 -10.48508 -10.38029 -10.33522 -10.12639 -9.77593 -9.43069 -8.98123 -8.49606 -8.32132 -7.06558 -5.83644 -3.14606 2.74403 3.11068 3.40260 3.44958 3.46091 3.78112 4.31144 4.36818 4.53063 4.64294 4.83618 4.86690 4.96131 4.98931 5.02335 5.10349 5.15117 5.26624 5.31650 5.33453 5.43157 5.53953 5.57080 5.58360 5.65105 5.71616 5.75531 5.80264 5.93737 5.95097 6.01350 6.04024 6.12431 6.22778 6.32587 6.35462 6.56336 6.58571 6.86591 6.87906 6.88940 7.62802 7.72827 8.31276 8.34118 9.45015 9.99188 10.33791 11.38427 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.033932 B = 0.003308 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.987187 B = 8463.433052 C = 8534.083764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.291 1.291 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.715 5.715 10 C 0.172 3.828 11 H 0.064 0.936 12 C -0.154 4.154 13 C 0.092 3.908 14 N -0.611 5.611 15 C 0.531 3.469 16 O -0.542 6.542 17 C -0.134 4.134 18 H 0.096 0.904 19 C 0.061 3.939 20 N -0.527 5.527 21 C 0.051 3.949 22 C -0.161 4.161 23 C -0.066 4.066 24 C -0.150 4.150 25 C 0.051 3.949 26 C 0.101 3.899 27 H 0.257 0.743 28 H 0.386 0.614 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.410 -21.455 -5.924 22.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.378 4.378 8 H 0.090 0.910 9 N -0.356 5.356 10 C 0.060 3.940 11 H 0.082 0.918 12 C -0.195 4.195 13 C -0.031 4.031 14 N -0.345 5.345 15 C 0.319 3.681 16 O -0.420 6.420 17 C -0.157 4.157 18 H 0.114 0.886 19 C -0.068 4.068 20 N -0.247 5.247 21 C -0.077 4.077 22 C -0.200 4.200 23 C -0.085 4.085 24 C -0.189 4.189 25 C -0.077 4.077 26 C -0.022 4.022 27 H 0.067 0.933 28 H 0.221 0.779 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.913 -21.279 -5.958 22.289 hybrid contribution 0.469 0.704 0.874 1.216 sum 3.382 -20.575 -5.084 21.462 Atomic orbital electron populations 1.69657 1.05171 1.26028 1.56875 1.24775 0.95519 0.97822 1.02474 0.86243 0.78526 0.83353 0.77882 1.21651 1.21173 1.21163 1.19170 0.91019 0.83834 1.43741 0.91012 1.42358 1.05791 0.99363 1.88084 1.21182 0.94312 0.85708 0.92824 0.91776 1.23558 1.02756 0.91584 1.01632 1.22551 0.91077 0.97984 0.91537 1.48558 1.40841 1.10366 1.34728 1.20139 0.80973 0.82393 0.84571 1.90623 1.33185 1.82593 1.35567 1.22047 1.01979 0.94539 0.97179 0.88592 1.22330 0.96654 0.97063 0.90725 1.62542 1.04286 1.06027 1.51873 1.22235 0.91379 1.02324 0.91809 1.22489 0.95438 1.03381 0.98689 1.20897 0.95328 0.92747 0.99552 1.22292 1.01723 0.98314 0.96550 1.22223 1.00368 0.89770 0.95349 1.22362 1.01117 0.84377 0.94359 0.93278 0.77950 0.90602 0.90537 0.90802 0.91749 0.89690 0.89708 0.90760 0.90683 0.92067 0.88563 0.89931 0.91628 0.91336 0.90612 0.90613 0.91728 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.25 -6.60 9.97 -15.06 -0.15 -6.75 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.32 5.24 -51.66 -0.27 -17.59 16 10 C 0.17 3.23 3.59 -66.10 -0.24 3.00 16 11 H 0.06 1.20 8.11 -51.93 -0.42 0.78 16 12 C -0.15 -2.43 6.77 -24.58 -0.17 -2.60 16 13 C 0.09 1.15 6.44 -2.53 -0.02 1.13 16 14 N -0.61 -9.20 3.25 -170.28 -0.55 -9.76 16 15 C 0.53 8.01 6.65 -10.98 -0.07 7.93 16 16 O -0.54 -9.95 14.04 5.56 0.08 -9.87 16 17 C -0.13 -1.52 2.12 -91.50 -0.19 -1.71 16 18 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 19 C 0.06 0.65 3.98 -3.75 -0.01 0.63 16 20 N -0.53 -5.52 5.22 -234.30 -1.22 -6.74 16 21 C 0.05 0.56 6.09 -3.74 -0.02 0.53 16 22 C -0.16 -1.89 5.43 -26.47 -0.14 -2.04 16 23 C -0.07 -0.72 2.60 -90.02 -0.23 -0.95 16 24 C -0.15 -1.25 5.75 -26.47 -0.15 -1.40 16 25 C 0.05 0.43 6.09 -3.74 -0.02 0.41 16 26 C 0.10 1.78 6.64 -2.90 -0.02 1.77 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.39 10.09 7.53 -40.82 -0.31 9.79 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 0.78 5.09 -51.93 -0.26 0.52 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.05 6.70 -51.93 -0.35 0.70 16 34 H 0.08 0.75 7.77 -51.93 -0.40 0.34 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.10 1.43 5.56 -51.93 -0.29 1.14 16 39 H 0.08 0.99 8.11 -51.93 -0.42 0.56 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.07 1.38 7.70 -51.93 -0.40 0.98 16 LS Contribution 339.73 15.07 5.12 5.12 Total: -1.00 -30.52 339.73 -10.16 -40.69 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -7.47 Total: 8.61 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -1.54 Total: -0.40 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: -1.32 Total: -60.97 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.08 Total: -9.87 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.52 -10.16 -40.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968702775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.974 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds