Wall clock time and date at job start Tue Mar 31 2020 07:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.64434 * 34.30546 * 10 9 7 12 12 C 1.55150 * 110.72288 * 271.15689 * 10 9 7 13 13 C 1.54914 * 101.58287 * 206.13858 * 12 10 9 14 14 N 1.47415 * 104.83137 * 37.00822 * 13 12 10 15 15 C 1.34780 * 125.64722 * 155.83943 * 14 13 12 16 16 O 1.21283 * 120.00125 * 180.02562 * 15 14 13 17 17 C 1.50704 * 119.99959 * 0.02562 * 15 14 13 18 18 H 1.09000 * 109.57677 * 59.74332 * 17 15 14 19 19 C 1.53141 * 109.58106 * 299.34727 * 17 15 14 20 20 N 1.46911 * 109.36641 * 240.21355 * 19 17 15 21 21 C 1.46940 * 111.06043 * 61.98722 * 20 19 17 22 22 C 1.53121 * 109.35026 * 298.03377 * 21 20 19 23 23 C 1.53386 * 108.84773 * 359.94859 * 22 21 20 24 24 C 1.53385 * 108.60248 * 301.07501 * 23 22 21 25 25 C 1.46942 * 111.05361 * 297.98597 * 20 19 17 26 26 C 1.47317 * 108.73898 * 335.71776 * 14 13 12 27 27 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 29 29 H 1.09000 * 111.00827 * 324.21376 * 12 10 9 30 30 H 1.08999 * 111.00790 * 88.06546 * 12 10 9 31 31 H 1.08998 * 110.36748 * 155.85045 * 13 12 10 32 32 H 1.09005 * 110.36345 * 278.16933 * 13 12 10 33 33 H 1.08999 * 109.48287 * 0.17320 * 19 17 15 34 34 H 1.08992 * 109.48896 * 120.23596 * 19 17 15 35 35 H 1.09004 * 109.48761 * 178.07364 * 21 20 19 36 36 H 1.08994 * 109.49201 * 58.00491 * 21 20 19 37 37 H 1.09007 * 109.57615 * 240.13810 * 22 21 20 38 38 H 1.09006 * 109.57469 * 119.76119 * 22 21 20 39 39 H 1.08999 * 110.11492 * 179.62738 * 23 22 21 40 40 H 1.09003 * 109.57807 * 178.72472 * 24 23 22 41 41 H 1.09004 * 109.57235 * 299.10196 * 24 23 22 42 42 H 1.08994 * 109.49632 * 181.92151 * 25 20 19 43 43 H 1.09004 * 109.49429 * 301.99800 * 25 20 19 44 44 H 1.09000 * 110.05964 * 241.87032 * 26 14 13 45 45 H 1.08999 * 109.85011 * 120.61311 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9800 -3.5681 0.5754 12 6 2.3581 -4.1175 -1.4503 13 6 2.4681 -5.6524 -1.2727 14 7 1.4459 -5.9900 -0.2657 15 6 0.8564 -7.1930 -0.1175 16 8 0.0239 -7.3578 0.7490 17 6 1.2316 -8.3333 -1.0286 18 1 2.2962 -8.5452 -0.9290 19 6 0.9138 -7.9576 -2.4787 20 7 -0.0586 -8.9123 -3.0275 21 6 -1.3236 -8.8651 -2.2813 22 6 -1.0693 -9.2663 -0.8256 23 6 0.4219 -9.5803 -0.6515 24 6 0.7980 -10.7164 -1.6110 25 6 0.4913 -10.2748 -3.0448 26 6 1.1768 -4.7961 0.5543 27 1 -0.4850 0.8401 0.0004 28 1 0.3557 -2.3880 0.0005 29 1 1.5375 -3.8595 -2.1197 30 1 3.2983 -3.6971 -1.8073 31 1 2.2556 -6.1594 -2.2138 32 1 3.4605 -5.9223 -0.9112 33 1 0.4938 -6.9522 -2.5101 34 1 1.8282 -7.9887 -3.0711 35 1 -2.0365 -9.5570 -2.7300 36 1 -1.7280 -7.8535 -2.3145 37 1 -1.6595 -10.1498 -0.5818 38 1 -1.3490 -8.4447 -0.1662 39 1 0.6275 -9.8625 0.3811 40 1 1.8612 -10.9374 -1.5164 41 1 0.2155 -11.6056 -1.3702 42 1 -0.2364 -10.9552 -3.4870 43 1 1.4083 -10.2895 -3.6338 44 1 1.4344 -4.9916 1.5952 45 1 0.1247 -4.5225 0.4757 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968702775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:19 Heat of formation + Delta-G solvation = -30.126651 kcal Electronic energy + Delta-G solvation = -24724.355355 eV Core-core repulsion = 21354.874277 eV Total energy + Delta-G solvation = -3369.481078 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.35548 -40.31339 -38.55714 -35.97269 -33.63675 -33.17780 -32.28860 -31.84299 -30.95183 -29.18761 -26.02137 -25.01430 -24.04045 -23.82275 -23.57589 -21.61071 -20.46229 -19.34940 -18.58294 -18.25892 -17.59233 -17.38126 -16.98024 -16.71619 -16.30375 -15.64733 -15.33611 -15.20469 -14.67522 -14.34174 -13.93845 -13.87728 -13.73983 -13.46501 -13.17361 -13.13708 -13.11994 -13.00222 -12.95183 -12.83867 -12.62842 -12.49936 -12.37837 -12.15359 -11.98021 -11.75273 -11.69260 -11.36850 -11.09835 -10.92941 -10.57777 -9.69734 -9.21119 -9.05431 -7.95218 -5.26035 1.49026 1.52092 1.56798 1.58042 1.91174 2.56981 2.99936 3.32498 3.39487 3.54344 3.74202 3.76705 3.83940 3.96925 4.02788 4.07882 4.21679 4.26086 4.28582 4.34646 4.38463 4.39535 4.46449 4.51446 4.61922 4.65055 4.79351 4.83885 4.96215 4.97909 5.02455 5.07418 5.11531 5.17285 5.19746 5.22474 5.28294 5.40885 5.44411 5.52962 6.05067 6.15217 6.24850 6.54103 7.11773 7.31116 8.02878 8.26570 9.28166 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.033932 B = 0.003308 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.987187 B = 8463.433052 C = 8534.083764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.076 4.076 3 Si 0.976 3.024 4 H -0.300 1.300 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.241 4.241 8 H 0.085 0.915 9 N -0.732 5.732 10 C 0.165 3.835 11 H 0.071 0.929 12 C -0.144 4.144 13 C 0.101 3.899 14 N -0.612 5.612 15 C 0.524 3.476 16 O -0.583 6.583 17 C -0.124 4.124 18 H 0.124 0.876 19 C 0.063 3.937 20 N -0.533 5.533 21 C 0.054 3.946 22 C -0.160 4.160 23 C -0.069 4.069 24 C -0.140 4.140 25 C 0.050 3.950 26 C 0.110 3.890 27 H 0.251 0.749 28 H 0.371 0.629 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.062 0.938 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.059 0.941 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.248 -23.631 -7.672 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.268 4.268 3 Si 0.805 3.195 4 H -0.227 1.227 5 H -0.203 1.203 6 H -0.199 1.199 7 C -0.373 4.373 8 H 0.102 0.898 9 N -0.371 5.371 10 C 0.056 3.944 11 H 0.089 0.911 12 C -0.185 4.185 13 C -0.021 4.021 14 N -0.345 5.345 15 C 0.314 3.686 16 O -0.463 6.463 17 C -0.147 4.147 18 H 0.142 0.858 19 C -0.066 4.066 20 N -0.253 5.253 21 C -0.075 4.075 22 C -0.199 4.199 23 C -0.088 4.088 24 C -0.179 4.179 25 C -0.077 4.077 26 C -0.014 4.014 27 H 0.059 0.941 28 H 0.202 0.798 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.134 0.866 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.113 0.887 44 H 0.077 0.923 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.818 -23.510 -7.733 25.423 hybrid contribution -0.449 1.292 1.458 1.999 sum 5.369 -22.217 -6.275 23.702 Atomic orbital electron populations 1.69836 1.06859 1.26193 1.59368 1.25617 0.96303 1.01329 1.03574 0.85177 0.77106 0.78909 0.78345 1.22663 1.20337 1.19940 1.19619 0.91696 0.84692 1.41270 0.89751 1.42551 1.05299 1.00787 1.88486 1.21391 0.93929 0.83932 0.95173 0.91105 1.23353 1.02582 0.94191 0.98380 1.22687 0.91707 0.95455 0.92269 1.48637 1.41489 1.09605 1.34807 1.21004 0.80037 0.83025 0.84522 1.90618 1.34876 1.83316 1.37526 1.22106 1.03486 0.92600 0.96484 0.85784 1.22362 0.97736 0.96065 0.90445 1.62557 1.03951 1.07454 1.51341 1.22163 0.92411 1.01379 0.91504 1.22411 0.96739 1.02259 0.98474 1.20925 0.94397 0.93778 0.99731 1.22243 1.02983 0.97122 0.95513 1.22360 1.01435 0.88384 0.95558 1.22024 0.99096 0.85574 0.94714 0.94070 0.79750 0.92685 0.89051 0.87968 0.88663 0.91984 0.86628 0.89217 0.92962 0.91168 0.92433 0.91360 0.89791 0.90569 0.89700 0.88660 0.92260 0.94205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.66 13.06 21.65 0.28 -59.38 16 2 C -0.08 -4.30 5.50 84.86 0.47 -3.84 16 3 Si 0.98 45.27 29.55 68.60 2.03 47.30 16 4 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.24 -12.96 9.97 84.03 0.84 -12.12 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 9 N -0.73 -36.31 5.24 -317.34 -1.66 -37.97 16 10 C 0.17 6.22 3.59 46.18 0.17 6.39 16 11 H 0.07 2.58 8.11 -2.39 -0.02 2.56 16 12 C -0.14 -4.34 6.77 31.99 0.22 -4.12 16 13 C 0.10 2.22 6.44 86.86 0.56 2.78 16 14 N -0.61 -18.01 3.25 -811.04 -2.63 -20.64 16 15 C 0.52 15.63 6.65 87.66 0.58 16.21 16 16 O -0.58 -22.32 14.04 -3.04 -0.04 -22.36 16 17 C -0.12 -2.50 2.12 -11.36 -0.02 -2.52 16 18 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 19 C 0.06 1.15 3.98 86.35 0.34 1.49 16 20 N -0.53 -9.75 5.22 -895.20 -4.67 -14.42 16 21 C 0.05 1.15 6.09 86.34 0.53 1.67 16 22 C -0.16 -3.75 5.43 30.76 0.17 -3.58 16 23 C -0.07 -1.38 2.60 -10.40 -0.03 -1.41 16 24 C -0.14 -1.80 5.75 30.77 0.18 -1.62 16 25 C 0.05 0.63 6.09 86.34 0.53 1.16 16 26 C 0.11 4.01 6.64 86.67 0.58 4.59 16 27 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 28 H 0.37 20.39 7.53 -92.71 -0.70 19.69 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.10 1.75 5.09 -2.39 -0.01 1.74 16 32 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.06 1.44 6.70 -2.39 -0.02 1.42 16 34 H 0.12 1.43 7.77 -2.39 -0.02 1.42 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.06 1.82 5.56 -2.38 -0.01 1.80 16 39 H 0.07 1.57 8.11 -2.39 -0.02 1.55 16 40 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 44 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.04 1.68 7.70 -2.39 -0.02 1.66 16 Total: -1.00 -69.54 339.73 -1.33 -70.87 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.28 Total: 31.51 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 5.09 Total: 5.08 kcal Atomic # 7 Polarization: -123.73 SS G_CDS: -8.68 Total: -132.41 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.04 Total: -22.36 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -69.54 -1.33 -70.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968702775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.743 kcal (2) G-P(sol) polarization free energy of solvation -69.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds