Wall clock time and date at job start Tue Mar 31 2020 07:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99846 * 2 1 4 4 H 1.48502 * 109.47253 * 240.00302 * 3 2 1 5 5 H 1.48496 * 109.47210 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47114 * 120.00345 * 3 2 1 7 7 C 1.38811 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00162 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99630 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99889 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.49685 * 35.06606 * 10 9 7 12 12 C 1.53040 * 109.49818 * 275.00351 * 10 9 7 13 13 C 1.53044 * 109.53970 * 178.64869 * 12 10 9 14 14 C 1.53192 * 109.30924 * 61.36368 * 13 12 10 15 15 N 1.46929 * 108.77949 * 305.36578 * 14 13 12 16 16 C 1.34770 * 120.63336 * 233.59211 * 15 14 13 17 17 O 1.21280 * 120.00416 * 185.40708 * 16 15 14 18 18 C 1.50703 * 119.99889 * 5.39841 * 16 15 14 19 19 C 1.56238 * 116.69257 * 295.35304 * 18 16 15 20 20 C 1.54657 * 103.36700 * 200.18707 * 19 18 16 21 21 N 1.49517 * 105.28243 * 359.25900 * 20 19 18 22 22 C 1.49517 * 105.92037 * 288.73571 * 21 20 19 23 23 C 1.54652 * 105.28526 * 71.26736 * 22 21 20 24 24 C 1.50459 * 102.03797 * 35.14942 * 21 20 19 25 25 C 1.46923 * 118.73458 * 53.85696 * 15 14 13 26 26 H 0.96993 * 120.00088 * 359.97438 * 1 2 3 27 27 H 0.96999 * 120.00559 * 0.02562 * 9 7 2 28 28 H 1.09005 * 109.46293 * 58.63083 * 12 10 9 29 29 H 1.08994 * 109.44986 * 298.66248 * 12 10 9 30 30 H 1.09001 * 109.49339 * 301.41758 * 13 12 10 31 31 H 1.08995 * 109.52492 * 181.33182 * 13 12 10 32 32 H 1.09003 * 109.58377 * 185.58222 * 14 13 12 33 33 H 1.08997 * 109.58332 * 65.15452 * 14 13 12 34 34 H 1.09000 * 110.66922 * 81.67155 * 19 18 16 35 35 H 1.09003 * 110.67019 * 318.70322 * 19 18 16 36 36 H 1.08998 * 110.28048 * 118.21554 * 20 19 18 37 37 H 1.08998 * 110.28060 * 240.21426 * 20 19 18 38 38 H 1.09007 * 110.27684 * 190.21568 * 22 21 20 39 39 H 1.08996 * 110.28998 * 312.21918 * 22 21 20 40 40 H 1.08999 * 110.67573 * 119.08221 * 23 22 21 41 41 H 1.09006 * 110.67103 * 242.05787 * 23 22 21 42 42 H 1.09006 * 111.90753 * 62.18666 * 24 21 20 43 43 H 1.09000 * 111.91114 * 188.39830 * 24 21 20 44 44 H 1.09003 * 109.58879 * 65.93510 * 25 15 14 45 45 H 1.08999 * 109.58595 * 186.35246 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9683 -3.5514 0.5898 12 6 2.4225 -4.0363 -1.4377 13 6 3.2170 -5.3443 -1.4359 14 6 2.3515 -6.4619 -0.8454 15 7 1.8770 -6.0423 0.4804 16 6 2.0776 -6.8231 1.5604 17 8 1.5968 -6.5139 2.6300 18 6 2.8990 -8.0807 1.4388 19 6 2.3249 -9.2082 0.5222 20 6 3.0653 -10.4760 1.0083 21 7 3.9763 -10.0071 2.0972 22 6 5.0557 -9.2247 1.4204 23 6 4.3767 -7.9183 0.9469 24 6 3.1598 -8.9211 2.7436 25 6 1.1747 -4.7578 0.6053 26 1 -0.4850 0.8400 0.0004 27 1 0.3556 -2.3881 -0.0005 28 1 3.0274 -3.2447 -1.8801 29 1 1.5110 -4.1658 -2.0211 30 1 4.1162 -5.2229 -0.8320 31 1 3.4967 -5.6020 -2.4574 32 1 2.9444 -7.3716 -0.7502 33 1 1.4978 -6.6461 -1.4975 34 1 2.5533 -9.0068 -0.5244 35 1 1.2494 -9.3114 0.6669 36 1 2.3532 -11.2032 1.3983 37 1 3.6421 -10.9126 0.1930 38 1 5.8575 -9.0002 2.1240 39 1 5.4466 -9.7795 0.5675 40 1 4.8435 -7.0509 1.4137 41 1 4.4152 -7.8364 -0.1394 42 1 2.2330 -9.3071 3.1681 43 1 3.7372 -8.3615 3.4796 44 1 0.2269 -4.8060 0.0691 45 1 0.9907 -4.5428 1.6579 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000713290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:30 Heat of formation + Delta-G solvation = 9.097968 kcal Electronic energy + Delta-G solvation = -24865.784661 eV Core-core repulsion = 21498.004490 eV Total energy + Delta-G solvation = -3367.780171 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.51414 -39.31566 -37.24992 -34.56377 -32.32691 -31.51751 -30.99608 -30.73679 -28.39313 -28.16605 -25.43502 -23.94030 -22.82353 -22.12254 -21.91882 -20.78876 -19.79893 -18.68463 -17.21517 -16.76451 -16.36222 -16.17702 -15.66523 -15.01019 -14.47870 -14.44451 -14.04814 -13.71066 -13.53122 -13.42556 -13.13760 -12.96203 -12.77452 -12.70934 -12.43666 -12.18742 -11.96078 -11.70645 -11.48685 -11.21977 -10.98513 -10.91729 -10.90567 -10.58987 -10.55848 -10.44324 -10.34286 -10.11573 -9.77331 -9.60850 -9.32038 -8.93361 -8.43811 -7.01600 -5.79791 -3.09731 2.59283 3.01692 3.42348 3.47015 3.47868 3.54766 4.13089 4.22787 4.49168 4.56170 4.62967 4.71954 4.76596 4.87589 4.91478 5.10218 5.19554 5.24234 5.25601 5.27446 5.44278 5.47413 5.51957 5.52983 5.56027 5.60019 5.72086 5.73276 5.76591 5.79867 5.82873 6.00961 6.11552 6.17306 6.21001 6.33680 6.34971 6.50855 6.67000 6.83806 7.00715 7.53442 7.66302 8.25531 8.38201 9.49208 10.04197 10.39297 11.42601 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.030962 B = 0.003556 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.117156 B = 7873.227881 C = 7984.885184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.170 3.830 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.134 4.134 14 C 0.096 3.904 15 N -0.599 5.599 16 C 0.550 3.450 17 O -0.536 6.536 18 C -0.128 4.128 19 C -0.140 4.140 20 C 0.013 3.987 21 N -0.467 5.467 22 C 0.013 3.987 23 C -0.140 4.140 24 C 0.041 3.959 25 C 0.106 3.894 26 H 0.256 0.744 27 H 0.384 0.616 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.065 0.935 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.870 -21.668 -2.389 23.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.059 3.941 11 H 0.067 0.933 12 C -0.178 4.178 13 C -0.172 4.172 14 C -0.026 4.026 15 N -0.331 5.331 16 C 0.336 3.664 17 O -0.413 6.413 18 C -0.133 4.133 19 C -0.179 4.179 20 C -0.116 4.116 21 N -0.186 5.186 22 C -0.116 4.116 23 C -0.178 4.178 24 C -0.088 4.088 25 C -0.016 4.016 26 H 0.066 0.934 27 H 0.218 0.782 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.084 0.916 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.986 -21.913 -1.356 23.362 hybrid contribution -0.167 1.746 -0.883 1.964 sum 7.819 -20.167 -2.239 21.745 Atomic orbital electron populations 1.69649 1.05118 1.25893 1.57297 1.24747 0.95516 0.97704 1.02738 0.86262 0.78540 0.83483 0.77858 1.21253 1.21644 1.21209 1.19155 0.90929 0.83895 1.43230 0.91224 1.42304 1.05810 0.99503 1.88592 1.20547 0.94529 0.85927 0.93131 0.93263 1.22283 0.99585 0.95230 1.00670 1.21945 0.98833 0.96099 1.00367 1.22111 0.98527 0.98248 0.83745 1.48014 1.57031 1.20493 1.07574 1.19354 0.80038 0.83346 0.83652 1.90713 1.50309 1.72743 1.27521 1.23817 0.96115 0.94239 0.99111 1.23371 1.01284 0.94067 0.99157 1.23603 0.96316 0.96835 0.94814 1.69994 1.06694 1.23974 1.17956 1.23612 0.95938 0.92844 0.99207 1.23424 0.93023 0.99705 1.01678 1.24349 0.98745 0.90752 0.94992 1.22118 0.94960 0.81247 1.03323 0.93372 0.78177 0.91545 0.92487 0.91867 0.91420 0.89354 0.91526 0.90167 0.90620 0.89684 0.90258 0.89629 0.90261 0.90454 0.90054 0.88967 0.88931 0.91643 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -17.91 5.13 -53.09 -0.27 -18.18 16 10 C 0.17 3.34 2.93 -67.59 -0.20 3.14 16 11 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 12 C -0.14 -2.29 5.46 -26.69 -0.15 -2.43 16 13 C -0.13 -1.63 6.08 -26.61 -0.16 -1.79 16 14 C 0.10 1.08 5.64 -3.71 -0.02 1.06 16 15 N -0.60 -8.68 2.97 -172.51 -0.51 -9.20 16 16 C 0.55 8.26 7.21 -10.99 -0.08 8.18 16 17 O -0.54 -10.21 16.06 5.56 0.09 -10.12 16 18 C -0.13 -1.39 0.96 -149.61 -0.14 -1.53 16 19 C -0.14 -1.18 5.34 -24.12 -0.13 -1.31 16 20 C 0.01 0.10 6.61 -1.49 -0.01 0.09 16 21 N -0.47 -4.38 6.94 -221.92 -1.54 -5.92 16 22 C 0.01 0.10 6.61 -1.49 -0.01 0.09 16 23 C -0.14 -1.26 5.37 -23.93 -0.13 -1.38 16 24 C 0.04 0.44 6.14 0.56 0.00 0.45 16 25 C 0.11 1.88 5.92 -3.49 -0.02 1.86 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 27 H 0.38 10.13 7.80 -40.82 -0.32 9.81 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.78 2.18 -51.93 -0.11 0.67 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.57 6.10 -51.93 -0.32 0.25 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.50 7.70 -51.93 -0.40 0.10 16 38 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 39 H 0.08 0.52 7.70 -51.93 -0.40 0.12 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.63 6.05 -51.93 -0.31 0.31 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.09 1.86 7.04 -51.93 -0.37 1.50 16 LS Contribution 341.20 15.07 5.14 5.14 Total: -1.00 -31.66 341.20 -9.95 -41.61 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -7.27 Total: 7.43 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -1.29 Total: -0.78 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -1.60 Total: -60.58 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.66 -9.95 -41.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000713290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.707 kcal (2) G-P(sol) polarization free energy of solvation -31.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds