Wall clock time and date at job start Tue Mar 31 2020 07:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99846 * 2 1 4 4 H 1.48502 * 109.47253 * 240.00302 * 3 2 1 5 5 H 1.48496 * 109.47210 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47114 * 120.00345 * 3 2 1 7 7 C 1.38811 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00162 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99630 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99889 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.49685 * 35.06606 * 10 9 7 12 12 C 1.53040 * 109.49818 * 275.00351 * 10 9 7 13 13 C 1.53044 * 109.53970 * 178.64869 * 12 10 9 14 14 C 1.53192 * 109.30924 * 61.36368 * 13 12 10 15 15 N 1.46929 * 108.77949 * 305.36578 * 14 13 12 16 16 C 1.34770 * 120.63336 * 233.59211 * 15 14 13 17 17 O 1.21280 * 120.00416 * 185.40708 * 16 15 14 18 18 C 1.50703 * 119.99889 * 5.39841 * 16 15 14 19 19 C 1.56238 * 116.69257 * 295.35304 * 18 16 15 20 20 C 1.54657 * 103.36700 * 200.18707 * 19 18 16 21 21 N 1.49517 * 105.28243 * 359.25900 * 20 19 18 22 22 C 1.49517 * 105.92037 * 288.73571 * 21 20 19 23 23 C 1.54652 * 105.28526 * 71.26736 * 22 21 20 24 24 C 1.50459 * 102.03797 * 35.14942 * 21 20 19 25 25 C 1.46923 * 118.73458 * 53.85696 * 15 14 13 26 26 H 0.96993 * 120.00088 * 359.97438 * 1 2 3 27 27 H 0.96999 * 120.00559 * 0.02562 * 9 7 2 28 28 H 1.09005 * 109.46293 * 58.63083 * 12 10 9 29 29 H 1.08994 * 109.44986 * 298.66248 * 12 10 9 30 30 H 1.09001 * 109.49339 * 301.41758 * 13 12 10 31 31 H 1.08995 * 109.52492 * 181.33182 * 13 12 10 32 32 H 1.09003 * 109.58377 * 185.58222 * 14 13 12 33 33 H 1.08997 * 109.58332 * 65.15452 * 14 13 12 34 34 H 1.09000 * 110.66922 * 81.67155 * 19 18 16 35 35 H 1.09003 * 110.67019 * 318.70322 * 19 18 16 36 36 H 1.08998 * 110.28048 * 118.21554 * 20 19 18 37 37 H 1.08998 * 110.28060 * 240.21426 * 20 19 18 38 38 H 1.09007 * 110.27684 * 190.21568 * 22 21 20 39 39 H 1.08996 * 110.28998 * 312.21918 * 22 21 20 40 40 H 1.08999 * 110.67573 * 119.08221 * 23 22 21 41 41 H 1.09006 * 110.67103 * 242.05787 * 23 22 21 42 42 H 1.09006 * 111.90753 * 62.18666 * 24 21 20 43 43 H 1.09000 * 111.91114 * 188.39830 * 24 21 20 44 44 H 1.09003 * 109.58879 * 65.93510 * 25 15 14 45 45 H 1.08999 * 109.58595 * 186.35246 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9683 -3.5514 0.5898 12 6 2.4225 -4.0363 -1.4377 13 6 3.2170 -5.3443 -1.4359 14 6 2.3515 -6.4619 -0.8454 15 7 1.8770 -6.0423 0.4804 16 6 2.0776 -6.8231 1.5604 17 8 1.5968 -6.5139 2.6300 18 6 2.8990 -8.0807 1.4388 19 6 2.3249 -9.2082 0.5222 20 6 3.0653 -10.4760 1.0083 21 7 3.9763 -10.0071 2.0972 22 6 5.0557 -9.2247 1.4204 23 6 4.3767 -7.9183 0.9469 24 6 3.1598 -8.9211 2.7436 25 6 1.1747 -4.7578 0.6053 26 1 -0.4850 0.8400 0.0004 27 1 0.3556 -2.3881 -0.0005 28 1 3.0274 -3.2447 -1.8801 29 1 1.5110 -4.1658 -2.0211 30 1 4.1162 -5.2229 -0.8320 31 1 3.4967 -5.6020 -2.4574 32 1 2.9444 -7.3716 -0.7502 33 1 1.4978 -6.6461 -1.4975 34 1 2.5533 -9.0068 -0.5244 35 1 1.2494 -9.3114 0.6669 36 1 2.3532 -11.2032 1.3983 37 1 3.6421 -10.9126 0.1930 38 1 5.8575 -9.0002 2.1240 39 1 5.4466 -9.7795 0.5675 40 1 4.8435 -7.0509 1.4137 41 1 4.4152 -7.8364 -0.1394 42 1 2.2330 -9.3071 3.1681 43 1 3.7372 -8.3615 3.4796 44 1 0.2269 -4.8060 0.0691 45 1 0.9907 -4.5428 1.6579 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000713290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:29 Heat of formation + Delta-G solvation = -14.552240 kcal Electronic energy + Delta-G solvation = -24866.810211 eV Core-core repulsion = 21498.004490 eV Total energy + Delta-G solvation = -3368.805721 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.38119 -40.44891 -38.62891 -36.26958 -33.95650 -32.83121 -31.93192 -31.62563 -29.80846 -29.12582 -26.65394 -25.85457 -23.54680 -23.33429 -23.07049 -21.61867 -21.09231 -19.84034 -19.17579 -17.77283 -17.31264 -17.15166 -16.78382 -16.34672 -16.01288 -15.76505 -15.30243 -15.21096 -14.86929 -14.71054 -14.26440 -14.01163 -13.83870 -13.76400 -13.51607 -13.11849 -12.93284 -12.85335 -12.70765 -12.41214 -12.37081 -12.26027 -12.21370 -12.19895 -11.91949 -11.83611 -11.70285 -11.30238 -11.23693 -10.92900 -10.87269 -10.01319 -9.73253 -9.05674 -7.97502 -5.27494 1.43044 1.45609 1.48404 1.54359 1.84475 2.54488 2.79327 3.32947 3.35866 3.45195 3.60598 3.74035 3.89004 3.97815 4.03439 4.05322 4.09656 4.15391 4.24042 4.31703 4.32468 4.47008 4.51147 4.54639 4.63731 4.72435 4.74626 4.76200 4.81477 4.86107 4.97050 5.00225 5.03474 5.08367 5.13440 5.16056 5.37636 5.39961 5.47258 5.50588 5.56946 5.71147 6.23788 6.37280 7.06307 7.29761 8.02243 8.26640 9.25637 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.030962 B = 0.003556 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.117156 B = 7873.227881 C = 7984.885184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.073 4.073 3 Si 0.973 3.027 4 H -0.274 1.274 5 H -0.295 1.295 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.074 0.926 9 N -0.736 5.736 10 C 0.169 3.831 11 H 0.031 0.969 12 C -0.128 4.128 13 C -0.124 4.124 14 C 0.095 3.905 15 N -0.596 5.596 16 C 0.544 3.456 17 O -0.588 6.588 18 C -0.133 4.133 19 C -0.132 4.132 20 C 0.016 3.984 21 N -0.474 5.474 22 C 0.016 3.984 23 C -0.133 4.133 24 C 0.038 3.962 25 C 0.118 3.882 26 H 0.252 0.748 27 H 0.373 0.627 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.121 0.879 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.106 0.894 40 H 0.061 0.939 41 H 0.105 0.895 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.955 -23.994 -4.635 26.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.265 4.265 3 Si 0.802 3.198 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.091 0.909 9 N -0.376 5.376 10 C 0.060 3.940 11 H 0.049 0.951 12 C -0.168 4.168 13 C -0.162 4.162 14 C -0.026 4.026 15 N -0.328 5.328 16 C 0.333 3.667 17 O -0.468 6.468 18 C -0.138 4.138 19 C -0.171 4.171 20 C -0.113 4.113 21 N -0.194 5.194 22 C -0.112 4.112 23 C -0.172 4.172 24 C -0.091 4.091 25 C -0.006 4.006 26 H 0.061 0.939 27 H 0.205 0.795 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.138 0.862 33 H 0.101 0.899 34 H 0.123 0.877 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.124 0.876 38 H 0.102 0.898 39 H 0.124 0.876 40 H 0.080 0.920 41 H 0.123 0.877 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.128 -24.298 -3.637 26.574 hybrid contribution -0.804 2.401 -0.132 2.535 sum 9.324 -21.897 -3.769 24.097 Atomic orbital electron populations 1.69809 1.06615 1.26227 1.59233 1.25560 0.96372 1.01064 1.03508 0.85222 0.77238 0.79162 0.78202 1.20004 1.22088 1.20712 1.19511 0.91284 0.85045 1.41548 0.90852 1.42490 1.05458 1.00775 1.88899 1.20701 0.93472 0.84640 0.95220 0.95089 1.22070 0.99981 0.97388 0.97357 1.21908 0.98041 0.93507 1.02784 1.22418 0.99469 0.98934 0.81796 1.48075 1.56511 1.18993 1.09211 1.20133 0.79531 0.84311 0.82766 1.90685 1.52407 1.74204 1.29523 1.23708 0.97017 0.92747 1.00282 1.23392 1.00903 0.93062 0.99721 1.23688 0.96310 0.96344 0.94929 1.69975 1.07094 1.23302 1.19037 1.23676 0.95303 0.92271 0.99995 1.23440 0.91076 0.99818 1.02849 1.24272 0.98427 0.91354 0.95077 1.21684 0.95148 0.82694 1.01037 0.93936 0.79510 0.93443 0.92563 0.91769 0.87708 0.86155 0.89865 0.87698 0.91359 0.89508 0.87639 0.89814 0.87562 0.92026 0.87707 0.90041 0.90466 0.91321 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.81 13.06 21.65 0.28 -59.53 16 2 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 3 Si 0.97 46.45 29.55 68.60 2.03 48.48 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.24 -13.61 9.93 84.03 0.83 -12.77 16 8 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.74 -37.77 5.13 -321.88 -1.65 -39.42 16 10 C 0.17 6.79 2.93 45.21 0.13 6.92 16 11 H 0.03 1.35 8.08 -2.39 -0.02 1.33 16 12 C -0.13 -4.12 5.46 30.62 0.17 -3.95 16 13 C -0.12 -2.59 6.08 30.67 0.19 -2.40 16 14 C 0.09 1.78 5.64 86.36 0.49 2.26 16 15 N -0.60 -16.82 2.97 -818.08 -2.43 -19.25 16 16 C 0.54 16.34 7.21 87.66 0.63 16.97 16 17 O -0.59 -23.54 16.06 -3.03 -0.05 -23.59 16 18 C -0.13 -2.66 0.96 -49.01 -0.05 -2.71 16 19 C -0.13 -1.77 5.34 32.28 0.17 -1.60 16 20 C 0.02 0.18 6.61 86.36 0.57 0.75 16 21 N -0.47 -7.72 6.94 -856.01 -5.94 -13.66 16 22 C 0.02 0.20 6.61 86.36 0.57 0.77 16 23 C -0.13 -1.98 5.37 32.41 0.17 -1.81 16 24 C 0.04 0.81 6.14 87.15 0.53 1.35 16 25 C 0.12 4.33 5.92 86.51 0.51 4.84 16 26 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 27 H 0.37 20.53 7.80 -92.71 -0.72 19.80 16 28 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.12 1.51 2.18 -2.39 -0.01 1.51 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.10 0.89 6.10 -2.39 -0.01 0.87 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.11 0.74 7.70 -2.39 -0.02 0.72 16 38 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.11 0.82 7.70 -2.39 -0.02 0.81 16 40 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.10 1.05 6.05 -2.38 -0.01 1.04 16 42 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 43 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.06 2.55 7.04 -2.39 -0.02 2.53 16 Total: -1.00 -72.60 341.20 -2.10 -74.70 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: 0.26 Total: 27.39 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 5.39 Total: 4.88 kcal Atomic # 7 Polarization: -122.13 SS G_CDS: -9.73 Total: -131.86 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.05 Total: -23.59 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -72.60 -2.10 -74.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000713290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.144 kcal (2) G-P(sol) polarization free energy of solvation -72.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds