Wall clock time and date at job start Tue Mar 31 2020 07:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00081 * 2 1 4 4 H 1.48503 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47505 * 300.00550 * 3 2 1 6 6 H 1.48500 * 109.46931 * 60.00584 * 3 2 1 7 7 C 1.38817 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99565 * 197.36420 * 7 2 1 9 9 N 1.36933 * 119.99811 * 17.36975 * 7 2 1 10 10 C 1.46923 * 120.63647 * 27.68128 * 9 7 2 11 11 C 1.53193 * 108.77364 * 126.36934 * 10 9 7 12 12 C 1.53036 * 109.31025 * 54.64118 * 11 10 9 13 13 C 1.53041 * 109.53829 * 298.62808 * 12 11 10 14 14 H 1.09005 * 109.49971 * 301.38513 * 13 12 11 15 15 N 1.46499 * 109.50174 * 181.32066 * 13 12 11 16 16 C 1.34770 * 120.00304 * 155.27306 * 15 13 12 17 17 O 1.21282 * 119.99962 * 359.73390 * 16 15 13 18 18 C 1.50704 * 120.00035 * 179.72234 * 16 15 13 19 19 C 1.56242 * 116.69236 * 297.57993 * 18 16 15 20 20 C 1.55914 * 102.63617 * 199.96617 * 19 18 16 21 21 N 1.49519 * 105.39258 * 0.47254 * 20 19 18 22 22 C 1.49520 * 105.92048 * 287.97050 * 21 20 19 23 23 C 1.54655 * 105.28850 * 71.26223 * 22 21 20 24 24 C 1.50470 * 102.03459 * 34.38054 * 21 20 19 25 25 C 1.46934 * 120.62429 * 207.66342 * 9 7 2 26 26 H 0.97004 * 119.99709 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.58298 * 6.58266 * 10 9 7 28 28 H 1.09000 * 109.58956 * 246.16207 * 10 9 7 29 29 H 1.08996 * 109.49793 * 294.68713 * 11 10 9 30 30 H 1.09002 * 109.48996 * 174.59027 * 11 10 9 31 31 H 1.09002 * 109.45943 * 178.61203 * 12 11 10 32 32 H 1.08993 * 109.45544 * 58.64695 * 12 11 10 33 33 H 0.97003 * 119.99231 * 335.00142 * 15 13 12 34 34 H 1.09001 * 110.66474 * 319.47224 * 19 18 16 35 35 H 1.09000 * 110.67156 * 82.60641 * 19 18 16 36 36 H 1.08997 * 110.87810 * 241.14424 * 20 19 18 37 37 H 1.09004 * 109.65594 * 119.16477 * 20 19 18 38 38 H 1.09001 * 110.27922 * 190.21518 * 22 21 20 39 39 H 1.08998 * 110.27933 * 312.21296 * 22 21 20 40 40 H 1.09004 * 110.66993 * 242.23078 * 23 22 21 41 41 H 1.08998 * 110.67326 * 119.08918 * 23 22 21 42 42 H 1.09001 * 111.90464 * 188.40544 * 24 21 20 43 43 H 1.08992 * 111.91310 * 62.19144 * 24 21 20 44 44 H 1.08998 * 109.58515 * 113.84263 * 25 9 7 45 45 H 1.09002 * 109.58886 * 353.41462 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3966 -1.2123 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0533 -1.2236 0.2786 9 7 1.3723 -2.3608 -0.3551 10 6 0.2280 -2.3338 -1.2762 11 6 0.5016 -3.3026 -2.4309 12 6 0.8198 -4.6882 -1.8644 13 6 2.0752 -4.6089 -0.9928 14 1 2.9093 -4.2386 -1.5890 15 7 2.3971 -5.9415 -0.4764 16 6 3.6631 -6.2397 -0.1231 17 8 4.5368 -5.4063 -0.2372 18 6 3.9930 -7.6086 0.4139 19 6 3.2997 -8.0237 1.7512 20 6 4.2147 -9.1762 2.2663 21 7 5.2994 -9.3081 1.2457 22 6 4.6584 -9.9232 0.0431 23 6 3.7551 -8.8161 -0.5487 24 6 5.4903 -7.8822 0.8047 25 6 1.8196 -3.6549 0.1782 26 1 -0.4850 0.8401 0.0004 27 1 0.0985 -1.3251 -1.6684 28 1 -0.6742 -2.6411 -0.7474 29 1 1.3503 -2.9441 -3.0133 30 1 -0.3790 -3.3644 -3.0703 31 1 0.9907 -5.3854 -2.6847 32 1 -0.0194 -5.0354 -1.2617 33 1 1.6983 -6.6080 -0.3852 34 1 3.2726 -7.1850 2.4469 35 1 2.2947 -8.4011 1.5626 36 1 3.6565 -10.1089 2.3470 37 1 4.6372 -8.9044 3.2337 38 1 5.4181 -10.2181 -0.6808 39 1 4.0595 -10.7862 0.3340 40 1 2.7091 -9.1223 -0.5306 41 1 4.0665 -8.5667 -1.5630 42 1 6.1553 -7.8082 -0.0558 43 1 5.8200 -7.2436 1.6242 44 1 1.0471 -4.0699 0.8257 45 1 2.7401 -3.5178 0.7456 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009223056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:28 Heat of formation + Delta-G solvation = 5.381722 kcal Electronic energy + Delta-G solvation = -24593.141335 eV Core-core repulsion = 21225.200016 eV Total energy + Delta-G solvation = -3367.941319 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.25062 -39.08705 -37.22548 -34.32615 -32.50194 -30.99059 -30.92312 -30.46148 -28.47047 -28.22666 -25.29217 -23.25996 -22.79956 -22.11955 -21.30093 -20.87630 -19.67491 -18.88469 -17.00012 -16.75568 -16.30960 -15.77614 -15.54109 -14.92652 -14.58047 -14.41213 -13.89087 -13.54049 -13.41711 -13.15597 -13.09009 -12.76858 -12.46459 -12.40561 -12.39296 -11.94231 -11.85297 -11.67698 -11.48012 -11.10731 -10.92338 -10.89894 -10.78944 -10.54908 -10.27410 -10.22215 -9.94400 -9.91076 -9.63859 -9.48247 -9.30567 -8.83962 -8.40631 -6.67952 -5.78532 -3.20501 2.71132 3.26815 3.39291 3.47257 3.51542 3.60073 4.20546 4.27779 4.52017 4.59578 4.73711 4.80845 4.84195 4.95729 5.23785 5.27908 5.29584 5.36331 5.40361 5.48376 5.52795 5.54262 5.57565 5.60888 5.66913 5.71194 5.79030 5.86847 6.06271 6.13837 6.20511 6.22601 6.37124 6.51218 6.59569 6.65475 6.67644 6.82360 6.97654 7.34778 7.63705 7.72415 7.83690 8.40173 8.47269 9.22164 9.84424 10.39900 11.30210 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.025921 B = 0.003694 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.946615 B = 7578.900721 C = 8111.854557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.114 4.114 13 C 0.125 3.875 14 H 0.086 0.914 15 N -0.717 5.717 16 C 0.546 3.454 17 O -0.530 6.530 18 C -0.131 4.131 19 C -0.135 4.135 20 C 0.013 3.987 21 N -0.468 5.468 22 C 0.013 3.987 23 C -0.135 4.135 24 C 0.039 3.961 25 C 0.143 3.857 26 H 0.253 0.747 27 H 0.090 0.910 28 H 0.019 0.981 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.394 0.606 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.016 0.984 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.277 -20.392 -0.797 20.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.380 4.380 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.042 3.958 11 C -0.180 4.180 12 C -0.152 4.152 13 C 0.020 3.980 14 H 0.104 0.896 15 N -0.367 5.367 16 C 0.330 3.670 17 O -0.406 6.406 18 C -0.136 4.136 19 C -0.174 4.174 20 C -0.116 4.116 21 N -0.187 5.187 22 C -0.116 4.116 23 C -0.174 4.174 24 C -0.090 4.090 25 C 0.015 3.985 26 H 0.063 0.937 27 H 0.108 0.892 28 H 0.037 0.963 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.227 0.773 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.034 0.966 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.435 -20.018 -0.610 20.513 hybrid contribution -0.916 0.940 -0.258 1.337 sum 3.520 -19.079 -0.869 19.420 Atomic orbital electron populations 1.70050 1.05254 1.25380 1.54172 1.25018 0.95291 0.98397 1.00899 0.86220 0.79555 0.83808 0.77247 1.20133 1.21514 1.21723 1.19273 0.92855 0.84697 1.41148 0.91506 1.44009 1.35635 1.01036 1.50374 1.20844 0.88553 0.98603 0.87845 1.22182 1.00443 0.95173 1.00154 1.21669 0.96726 0.98599 0.98222 1.21770 0.97798 0.81242 0.97202 0.89610 1.46116 1.09094 1.15768 1.65723 1.19349 0.82764 0.87279 0.77561 1.90748 1.47110 1.49315 1.53397 1.23818 0.99443 0.93177 0.97146 1.23421 0.99295 0.99361 0.95341 1.23827 0.92432 0.97964 0.97383 1.69995 1.30300 1.11986 1.06442 1.23599 0.97230 0.97078 0.93684 1.23194 1.01006 0.93976 0.99217 1.24345 0.93622 0.89477 1.01527 1.21176 0.97854 0.86845 0.92601 0.93719 0.89226 0.96333 0.92409 0.92711 0.93150 0.92295 0.77343 0.90194 0.90629 0.90254 0.89736 0.89746 0.90342 0.90552 0.90659 0.89013 0.88859 0.96567 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.32 11.19 55.49 0.62 -25.70 16 2 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 3 Si 0.90 22.12 29.59 -169.99 -5.03 17.09 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.25 -7.08 9.59 -15.06 -0.14 -7.22 16 8 H 0.07 1.91 7.89 -52.49 -0.41 1.50 16 9 N -0.59 -14.99 2.99 -172.31 -0.52 -15.51 16 10 C 0.17 3.95 5.31 -3.71 -0.02 3.93 16 11 C -0.14 -2.59 6.08 -26.61 -0.16 -2.75 16 12 C -0.11 -1.82 5.35 -26.69 -0.14 -1.96 16 13 C 0.13 2.23 2.60 -67.81 -0.18 2.05 16 14 H 0.09 1.77 7.58 -51.93 -0.39 1.37 16 15 N -0.72 -10.10 5.08 -53.69 -0.27 -10.38 16 16 C 0.55 8.21 7.25 -10.99 -0.08 8.14 16 17 O -0.53 -10.42 16.23 5.56 0.09 -10.33 16 18 C -0.13 -1.44 1.37 -149.92 -0.20 -1.65 16 19 C -0.14 -1.24 6.13 -23.43 -0.14 -1.39 16 20 C 0.01 0.11 6.64 -0.81 -0.01 0.10 16 21 N -0.47 -4.61 6.94 -221.23 -1.54 -6.14 16 22 C 0.01 0.11 6.61 -1.49 -0.01 0.10 16 23 C -0.13 -1.15 6.05 -24.12 -0.15 -1.30 16 24 C 0.04 0.45 6.05 0.44 0.00 0.45 16 25 C 0.14 3.12 6.09 -3.71 -0.02 3.10 16 26 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.09 2.38 6.03 -51.93 -0.31 2.06 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.39 4.34 8.60 -40.82 -0.35 3.98 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.58 7.86 -51.93 -0.41 0.17 16 36 H 0.08 0.55 7.69 -51.93 -0.40 0.15 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.52 7.69 -51.93 -0.40 0.12 16 40 H 0.08 0.54 7.86 -51.93 -0.41 0.13 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 1.35 7.93 -51.93 -0.41 0.94 16 LS Contribution 348.54 15.07 5.25 5.25 Total: -1.00 -31.82 348.54 -10.44 -42.26 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -7.71 Total: 1.88 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -1.34 Total: 1.57 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -1.70 Total: -57.73 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.82 -10.44 -42.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009223056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.645 kcal (2) G-P(sol) polarization free energy of solvation -31.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds