Wall clock time and date at job start Tue Mar 31 2020 07:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00081 * 2 1 4 4 H 1.48503 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47505 * 300.00550 * 3 2 1 6 6 H 1.48500 * 109.46931 * 60.00584 * 3 2 1 7 7 C 1.38817 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99565 * 197.36420 * 7 2 1 9 9 N 1.36933 * 119.99811 * 17.36975 * 7 2 1 10 10 C 1.46923 * 120.63647 * 27.68128 * 9 7 2 11 11 C 1.53193 * 108.77364 * 126.36934 * 10 9 7 12 12 C 1.53036 * 109.31025 * 54.64118 * 11 10 9 13 13 C 1.53041 * 109.53829 * 298.62808 * 12 11 10 14 14 H 1.09005 * 109.49971 * 301.38513 * 13 12 11 15 15 N 1.46499 * 109.50174 * 181.32066 * 13 12 11 16 16 C 1.34770 * 120.00304 * 155.27306 * 15 13 12 17 17 O 1.21282 * 119.99962 * 359.73390 * 16 15 13 18 18 C 1.50704 * 120.00035 * 179.72234 * 16 15 13 19 19 C 1.56242 * 116.69236 * 297.57993 * 18 16 15 20 20 C 1.55914 * 102.63617 * 199.96617 * 19 18 16 21 21 N 1.49519 * 105.39258 * 0.47254 * 20 19 18 22 22 C 1.49520 * 105.92048 * 287.97050 * 21 20 19 23 23 C 1.54655 * 105.28850 * 71.26223 * 22 21 20 24 24 C 1.50470 * 102.03459 * 34.38054 * 21 20 19 25 25 C 1.46934 * 120.62429 * 207.66342 * 9 7 2 26 26 H 0.97004 * 119.99709 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.58298 * 6.58266 * 10 9 7 28 28 H 1.09000 * 109.58956 * 246.16207 * 10 9 7 29 29 H 1.08996 * 109.49793 * 294.68713 * 11 10 9 30 30 H 1.09002 * 109.48996 * 174.59027 * 11 10 9 31 31 H 1.09002 * 109.45943 * 178.61203 * 12 11 10 32 32 H 1.08993 * 109.45544 * 58.64695 * 12 11 10 33 33 H 0.97003 * 119.99231 * 335.00142 * 15 13 12 34 34 H 1.09001 * 110.66474 * 319.47224 * 19 18 16 35 35 H 1.09000 * 110.67156 * 82.60641 * 19 18 16 36 36 H 1.08997 * 110.87810 * 241.14424 * 20 19 18 37 37 H 1.09004 * 109.65594 * 119.16477 * 20 19 18 38 38 H 1.09001 * 110.27922 * 190.21518 * 22 21 20 39 39 H 1.08998 * 110.27933 * 312.21296 * 22 21 20 40 40 H 1.09004 * 110.66993 * 242.23078 * 23 22 21 41 41 H 1.08998 * 110.67326 * 119.08918 * 23 22 21 42 42 H 1.09001 * 111.90464 * 188.40544 * 24 21 20 43 43 H 1.08992 * 111.91310 * 62.19144 * 24 21 20 44 44 H 1.08998 * 109.58515 * 113.84263 * 25 9 7 45 45 H 1.09002 * 109.58886 * 353.41462 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3966 -1.2123 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0533 -1.2236 0.2786 9 7 1.3723 -2.3608 -0.3551 10 6 0.2280 -2.3338 -1.2762 11 6 0.5016 -3.3026 -2.4309 12 6 0.8198 -4.6882 -1.8644 13 6 2.0752 -4.6089 -0.9928 14 1 2.9093 -4.2386 -1.5890 15 7 2.3971 -5.9415 -0.4764 16 6 3.6631 -6.2397 -0.1231 17 8 4.5368 -5.4063 -0.2372 18 6 3.9930 -7.6086 0.4139 19 6 3.2997 -8.0237 1.7512 20 6 4.2147 -9.1762 2.2663 21 7 5.2994 -9.3081 1.2457 22 6 4.6584 -9.9232 0.0431 23 6 3.7551 -8.8161 -0.5487 24 6 5.4903 -7.8822 0.8047 25 6 1.8196 -3.6549 0.1782 26 1 -0.4850 0.8401 0.0004 27 1 0.0985 -1.3251 -1.6684 28 1 -0.6742 -2.6411 -0.7474 29 1 1.3503 -2.9441 -3.0133 30 1 -0.3790 -3.3644 -3.0703 31 1 0.9907 -5.3854 -2.6847 32 1 -0.0194 -5.0354 -1.2617 33 1 1.6983 -6.6080 -0.3852 34 1 3.2726 -7.1850 2.4469 35 1 2.2947 -8.4011 1.5626 36 1 3.6565 -10.1089 2.3470 37 1 4.6372 -8.9044 3.2337 38 1 5.4181 -10.2181 -0.6808 39 1 4.0595 -10.7862 0.3340 40 1 2.7091 -9.1223 -0.5306 41 1 4.0665 -8.5667 -1.5630 42 1 6.1553 -7.8082 -0.0558 43 1 5.8200 -7.2436 1.6242 44 1 1.0471 -4.0699 0.8257 45 1 2.7401 -3.5178 0.7456 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009223056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:28 Heat of formation + Delta-G solvation = -18.500857 kcal Electronic energy + Delta-G solvation = -24594.176961 eV Core-core repulsion = 21225.200016 eV Total energy + Delta-G solvation = -3368.976945 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.12526 -40.37030 -38.81797 -35.96870 -34.20529 -32.36821 -31.99569 -31.58151 -29.93525 -29.03909 -27.28682 -24.59134 -23.90076 -23.45727 -22.67269 -21.71647 -21.18511 -20.09305 -18.74427 -17.96893 -17.24156 -17.09211 -16.77714 -16.24634 -16.04926 -15.79942 -15.51584 -15.16534 -14.77728 -14.33191 -14.24569 -14.04177 -13.78005 -13.76611 -13.42024 -13.13645 -13.06061 -12.79041 -12.71902 -12.57996 -12.40121 -12.26769 -12.13051 -11.99469 -11.80304 -11.69229 -11.52728 -11.33206 -11.25444 -10.82742 -10.64451 -10.14958 -10.04439 -8.72493 -7.93455 -5.38784 1.41657 1.43487 1.52645 1.55374 2.07388 2.48322 2.81643 3.20700 3.41523 3.47993 3.66749 3.76371 3.86595 3.96729 4.05763 4.09138 4.16147 4.23191 4.33036 4.45190 4.49748 4.52966 4.56171 4.65657 4.78280 4.79173 4.84151 4.89679 4.93923 4.95081 4.99035 5.03393 5.10535 5.14316 5.16246 5.24994 5.44864 5.48468 5.54089 5.60594 5.70694 5.74187 6.33968 6.56491 7.10149 7.25442 7.79670 8.29211 9.12261 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.025921 B = 0.003694 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.946615 B = 7578.900721 C = 8111.854557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.042 4.042 3 Si 0.964 3.036 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.287 1.287 7 C -0.270 4.270 8 H 0.051 0.949 9 N -0.608 5.608 10 C 0.171 3.829 11 C -0.130 4.130 12 C -0.103 4.103 13 C 0.141 3.859 14 H 0.055 0.945 15 N -0.701 5.701 16 C 0.544 3.456 17 O -0.585 6.585 18 C -0.132 4.132 19 C -0.130 4.130 20 C 0.016 3.984 21 N -0.477 5.477 22 C 0.015 3.985 23 C -0.125 4.125 24 C 0.035 3.965 25 C 0.146 3.854 26 H 0.253 0.747 27 H 0.054 0.946 28 H 0.006 0.994 29 H 0.046 0.954 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.415 0.585 34 H 0.061 0.939 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.022 0.978 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.180 -23.222 -1.482 23.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.238 4.238 3 Si 0.792 3.208 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.214 1.214 7 C -0.400 4.400 8 H 0.069 0.931 9 N -0.331 5.331 10 C 0.046 3.954 11 C -0.170 4.170 12 C -0.141 4.141 13 C 0.035 3.965 14 H 0.073 0.927 15 N -0.352 5.352 16 C 0.331 3.669 17 O -0.464 6.464 18 C -0.138 4.138 19 C -0.168 4.168 20 C -0.113 4.113 21 N -0.197 5.197 22 C -0.114 4.114 23 C -0.164 4.164 24 C -0.094 4.094 25 C 0.019 3.981 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.024 0.976 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.251 0.749 34 H 0.080 0.920 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.040 0.960 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.313 -22.912 -1.295 23.187 hybrid contribution -0.543 1.809 0.016 1.889 sum 2.770 -21.103 -1.279 21.322 Atomic orbital electron populations 1.70169 1.06343 1.25979 1.54847 1.25699 0.96115 1.01140 1.00829 0.85263 0.78314 0.79927 0.77284 1.20004 1.20855 1.21372 1.19416 0.92559 0.86463 1.41539 0.93101 1.44234 1.36074 1.01484 1.51355 1.20728 0.87490 0.98223 0.88943 1.22023 1.01383 0.95318 0.98260 1.21600 0.95784 0.97630 0.99066 1.21262 0.97945 0.82038 0.95288 0.92677 1.45858 1.09620 1.14673 1.65033 1.20070 0.82191 0.88363 0.76316 1.90728 1.48710 1.51419 1.55540 1.23695 0.99471 0.91612 0.98979 1.23435 1.00672 0.99151 0.93593 1.23887 0.91972 0.98682 0.96748 1.69972 1.31581 1.10476 1.07627 1.23688 0.97408 0.97375 0.92923 1.23205 1.02743 0.92417 0.98034 1.24270 0.93939 0.90674 1.00550 1.21204 0.96259 0.86550 0.94105 0.93801 0.92712 0.97603 0.93506 0.89595 0.89387 0.90474 0.74853 0.91975 0.88019 0.87656 0.90105 0.89565 0.87886 0.87886 0.91219 0.90070 0.90686 0.96046 0.95519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.28 11.19 21.65 0.24 -55.04 16 2 C -0.04 -2.41 4.91 84.86 0.42 -2.00 16 3 Si 0.96 46.58 29.59 68.60 2.03 48.61 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 6 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 7 C -0.27 -15.86 9.59 84.04 0.81 -15.05 16 8 H 0.05 3.08 7.89 -2.91 -0.02 3.05 16 9 N -0.61 -31.96 2.99 -699.08 -2.09 -34.05 16 10 C 0.17 8.19 5.31 86.36 0.46 8.65 16 11 C -0.13 -4.63 6.08 30.67 0.19 -4.44 16 12 C -0.10 -2.97 5.35 30.62 0.16 -2.81 16 13 C 0.14 4.95 2.60 45.07 0.12 5.07 16 14 H 0.05 2.31 7.58 -2.38 -0.02 2.30 16 15 N -0.70 -18.64 5.08 -442.16 -2.25 -20.89 16 16 C 0.54 16.25 7.25 87.66 0.64 16.89 16 17 O -0.58 -24.03 16.23 -3.04 -0.05 -24.08 16 18 C -0.13 -2.73 1.37 -49.21 -0.07 -2.80 16 19 C -0.13 -2.08 6.13 32.73 0.20 -1.88 16 20 C 0.02 0.22 6.64 86.80 0.58 0.80 16 21 N -0.48 -8.47 6.94 -853.85 -5.93 -14.40 16 22 C 0.01 0.19 6.61 86.36 0.57 0.76 16 23 C -0.13 -1.73 6.05 32.29 0.20 -1.53 16 24 C 0.04 0.80 6.05 87.06 0.53 1.33 16 25 C 0.15 6.52 6.09 86.36 0.53 7.05 16 26 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 27 H 0.05 2.98 6.03 -2.39 -0.01 2.97 16 28 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.41 7.67 8.60 -92.71 -0.80 6.87 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.10 1.12 7.86 -2.39 -0.02 1.10 16 36 H 0.11 0.99 7.69 -2.39 -0.02 0.97 16 37 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.10 0.86 7.69 -2.39 -0.02 0.84 16 40 H 0.10 0.91 7.86 -2.38 -0.02 0.89 16 41 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 43 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 44 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.03 1.32 7.93 -2.39 -0.02 1.30 16 Total: -1.00 -73.46 348.54 -2.56 -76.01 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.17 Total: 13.82 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 5.31 Total: 10.02 kcal Atomic # 7 Polarization: -114.35 SS G_CDS: -10.02 Total: -124.38 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.05 Total: -24.08 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -73.46 -2.56 -76.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009223056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.514 kcal (2) G-P(sol) polarization free energy of solvation -73.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds