Wall clock time and date at job start Tue Mar 31 2020 07:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99727 * 3 2 1 5 5 H 1.48497 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47169 * 120.00009 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.47022 * 125.64725 * 0.30349 * 9 7 2 11 11 C 1.54325 * 107.26808 * 181.02022 * 10 9 7 12 12 C 1.55160 * 102.94141 * 22.19396 * 11 10 9 13 13 H 1.09001 * 111.00264 * 82.61260 * 12 11 10 14 14 N 1.46503 * 111.00158 * 206.42382 * 12 11 10 15 15 C 1.34781 * 119.99894 * 205.00375 * 14 12 11 16 16 O 1.21277 * 119.99604 * 359.97438 * 15 14 12 17 17 C 1.50697 * 120.00019 * 179.97438 * 15 14 12 18 18 H 1.09003 * 109.57851 * 59.99753 * 17 15 14 19 19 C 1.53143 * 109.58028 * 299.73448 * 17 15 14 20 20 N 1.47179 * 109.22329 * 240.23144 * 19 17 15 21 21 C 1.46942 * 111.01794 * 297.89397 * 20 19 17 22 22 C 1.53123 * 109.35333 * 62.03066 * 21 20 19 23 23 C 1.53384 * 109.57815 * 180.25630 * 17 15 14 24 24 C 1.53393 * 108.59783 * 60.84920 * 23 17 15 25 25 C 1.46944 * 111.13057 * 61.91761 * 20 19 17 26 26 C 1.47427 * 125.64610 * 179.97438 * 9 7 2 27 27 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.88335 * 300.43312 * 10 9 7 29 29 H 1.08993 * 109.88164 * 61.44874 * 10 9 7 30 30 H 1.08996 * 110.71913 * 140.55329 * 11 10 9 31 31 H 1.08996 * 110.71966 * 263.65130 * 11 10 9 32 32 H 0.96995 * 120.00608 * 24.99584 * 14 12 11 33 33 H 1.09000 * 109.48321 * 0.15335 * 19 17 15 34 34 H 1.09001 * 109.49015 * 120.21388 * 19 17 15 35 35 H 1.08996 * 109.48899 * 302.07059 * 21 20 19 36 36 H 1.08997 * 109.50820 * 182.00619 * 21 20 19 37 37 H 1.08997 * 109.57845 * 240.24883 * 22 21 20 38 38 H 1.09001 * 109.57961 * 119.85846 * 22 21 20 39 39 H 1.08990 * 110.11772 * 299.41363 * 23 17 15 40 40 H 1.09002 * 109.57661 * 178.80894 * 24 23 17 41 41 H 1.08999 * 109.57538 * 299.19813 * 24 23 17 42 42 H 1.09001 * 109.49508 * 58.00529 * 25 20 19 43 43 H 1.09001 * 109.49340 * 178.05761 * 25 20 19 44 44 H 1.09001 * 110.36238 * 274.74377 * 26 9 7 45 45 H 1.08998 * 110.36877 * 37.06960 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 -0.1375 -2.5328 0.0070 11 6 -0.4483 -4.0440 0.0414 12 6 0.8519 -4.6529 0.6297 13 1 0.8561 -4.5881 1.7178 14 7 1.0293 -6.0385 0.1883 15 6 1.7592 -6.8942 0.9310 16 8 2.2695 -6.5168 1.9645 17 6 1.9413 -8.3196 0.4773 18 1 2.4317 -8.3333 -0.4961 19 6 0.5750 -9.0035 0.3732 20 7 0.5399 -10.1575 1.2861 21 6 1.5524 -11.1552 0.9135 22 6 2.9460 -10.5315 1.0291 23 6 2.8010 -9.0777 1.4966 24 6 2.0780 -9.0685 2.8494 25 6 0.7086 -9.7334 2.6828 26 6 1.9336 -3.7311 0.0076 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5579 -2.0477 0.8879 29 1 -0.5542 -2.0867 -0.8960 30 1 -1.2985 -4.2481 0.6922 31 1 -0.6342 -4.4224 -0.9637 32 1 0.6214 -6.3403 -0.6383 33 1 -0.2074 -8.2966 0.6494 34 1 0.4148 -9.3421 -0.6504 35 1 1.3831 -11.4791 -0.1134 36 1 1.4813 -12.0131 1.5820 37 1 3.4386 -10.5550 0.0571 38 1 3.5375 -11.0908 1.7540 39 1 3.7824 -8.6110 1.5799 40 1 2.6660 -9.6220 3.5815 41 1 1.9461 -8.0402 3.1861 42 1 -0.0751 -9.0224 2.9442 43 1 0.6441 -10.6027 3.3372 44 1 2.1623 -4.0445 -1.0111 45 1 2.8356 -3.7389 0.6194 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014465649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:27 Heat of formation + Delta-G solvation = -3.150239 kcal Electronic energy + Delta-G solvation = -24553.474796 eV Core-core repulsion = 21185.163504 eV Total energy + Delta-G solvation = -3368.311293 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.35889 -38.97174 -37.13011 -34.11595 -32.40391 -32.20172 -31.18186 -31.04307 -29.11495 -27.09112 -24.74875 -23.79157 -23.23695 -23.06235 -20.69531 -20.35394 -19.89329 -17.76199 -17.37085 -16.87401 -16.59224 -16.47387 -15.88380 -15.05963 -14.59722 -14.56871 -14.12049 -13.51785 -13.25624 -13.05324 -12.83388 -12.54750 -12.44082 -12.37608 -12.35564 -12.24144 -11.97507 -11.78752 -11.66156 -11.20127 -10.99941 -10.90626 -10.74862 -10.49720 -10.40554 -10.29832 -10.12799 -9.91018 -9.72832 -9.41411 -8.73775 -8.59322 -8.41643 -6.84257 -5.71302 -3.04993 2.77262 3.30291 3.42139 3.46003 3.47553 3.73767 4.30167 4.44262 4.52567 4.66289 4.81732 4.93227 4.96400 4.97619 5.07791 5.16586 5.24930 5.32440 5.39567 5.44583 5.53948 5.60238 5.62254 5.72014 5.73620 5.78164 5.80072 5.91704 5.99432 6.03304 6.17093 6.29457 6.34638 6.41846 6.60722 6.68942 6.81259 6.83289 6.98259 7.53489 7.57273 7.71119 7.81888 8.24842 8.42269 9.21842 9.81754 10.46714 11.40509 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.038950 B = 0.003198 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.701818 B = 8754.622898 C = 9022.979339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.149 4.149 12 C 0.127 3.873 13 H 0.096 0.904 14 N -0.716 5.716 15 C 0.517 3.483 16 O -0.535 6.535 17 C -0.141 4.141 18 H 0.098 0.902 19 C 0.061 3.939 20 N -0.528 5.528 21 C 0.052 3.948 22 C -0.151 4.151 23 C -0.065 4.065 24 C -0.161 4.161 25 C 0.052 3.948 26 C 0.130 3.870 27 H 0.253 0.747 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.397 0.603 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.019 0.981 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.559 -22.938 0.166 22.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.188 4.188 12 C 0.022 3.978 13 H 0.114 0.886 14 N -0.366 5.366 15 C 0.303 3.697 16 O -0.412 6.412 17 C -0.164 4.164 18 H 0.116 0.884 19 C -0.068 4.068 20 N -0.248 5.248 21 C -0.077 4.077 22 C -0.190 4.190 23 C -0.085 4.085 24 C -0.200 4.200 25 C -0.077 4.077 26 C 0.003 3.997 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.230 0.770 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.115 0.885 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.036 0.964 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.359 -22.650 0.881 22.670 hybrid contribution 1.166 1.197 -0.457 1.733 sum 1.525 -21.453 0.424 21.511 Atomic orbital electron populations 1.69932 1.04876 1.25201 1.57108 1.24800 0.95751 0.97674 1.02178 0.86173 0.78447 0.83062 0.77936 1.21172 1.21562 1.21113 1.19031 0.90467 0.82313 1.43861 0.90467 1.44388 1.01643 0.99793 1.87272 1.21143 0.84496 0.87490 1.01467 1.23172 0.95918 1.00038 0.99702 1.22349 0.96770 0.78678 0.99962 0.88605 1.46045 1.53056 1.11503 1.26010 1.20453 0.78189 0.86942 0.84098 1.90641 1.48062 1.78347 1.24157 1.22117 0.99938 0.92993 1.01344 0.88406 1.22299 0.94347 0.92326 0.97831 1.62577 1.47150 1.12120 1.02942 1.22216 0.88976 0.94811 1.01689 1.22312 0.98772 0.96116 1.01816 1.20883 0.99027 0.94244 0.94317 1.22472 0.96707 1.04107 0.96668 1.22231 0.96692 0.99753 0.88993 1.21853 0.94841 0.86231 0.96824 0.93671 0.93259 0.93608 0.91675 0.92064 0.76968 0.89930 0.89729 0.90634 0.90655 0.91594 0.91353 0.89830 0.92077 0.88509 0.90763 0.90814 0.96372 0.94045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.23 10.31 55.49 0.57 -26.65 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.23 -6.52 10.28 -15.06 -0.15 -6.67 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.60 -15.74 3.39 -169.92 -0.58 -16.31 16 10 C 0.18 4.31 5.38 -3.06 -0.02 4.29 16 11 C -0.15 -2.66 6.59 -24.89 -0.16 -2.83 16 12 C 0.13 2.29 3.44 -65.65 -0.23 2.07 16 13 H 0.10 1.93 7.54 -51.93 -0.39 1.54 16 14 N -0.72 -9.89 4.95 -51.61 -0.26 -10.15 16 15 C 0.52 7.33 6.60 -10.98 -0.07 7.26 16 16 O -0.54 -9.67 13.38 5.56 0.07 -9.60 16 17 C -0.14 -1.47 2.59 -91.50 -0.24 -1.70 16 18 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 19 C 0.06 0.56 5.64 -3.60 -0.02 0.54 16 20 N -0.53 -4.98 5.22 -234.06 -1.22 -6.20 16 21 C 0.05 0.40 6.09 -3.74 -0.02 0.38 16 22 C -0.15 -1.22 5.75 -26.46 -0.15 -1.37 16 23 C -0.07 -0.69 2.59 -90.01 -0.23 -0.92 16 24 C -0.16 -1.80 5.43 -26.46 -0.14 -1.95 16 25 C 0.05 0.52 6.10 -3.73 -0.02 0.49 16 26 C 0.13 2.81 6.93 -2.40 -0.02 2.80 16 27 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.05 1.32 7.37 -51.93 -0.38 0.93 16 29 H 0.05 1.21 7.50 -51.93 -0.39 0.82 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.97 8.01 -51.93 -0.42 0.55 16 32 H 0.40 4.32 8.48 -40.82 -0.35 3.98 16 33 H 0.08 0.82 7.46 -51.93 -0.39 0.43 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.10 1.38 5.57 -51.93 -0.29 1.09 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 340.92 15.07 5.14 5.14 Total: -1.00 -32.01 340.92 -10.52 -42.53 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.64 Total: 1.83 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -1.58 Total: 2.05 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: -1.48 Total: -59.31 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.07 Total: -9.60 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.01 -10.52 -42.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014465649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.379 kcal (2) G-P(sol) polarization free energy of solvation -32.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds