Wall clock time and date at job start Tue Mar 31 2020 07:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99727 * 3 2 1 5 5 H 1.48497 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47169 * 120.00009 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.47022 * 125.64725 * 0.30349 * 9 7 2 11 11 C 1.54325 * 107.26808 * 181.02022 * 10 9 7 12 12 C 1.55160 * 102.94141 * 22.19396 * 11 10 9 13 13 H 1.09001 * 111.00264 * 82.61260 * 12 11 10 14 14 N 1.46503 * 111.00158 * 206.42382 * 12 11 10 15 15 C 1.34781 * 119.99894 * 205.00375 * 14 12 11 16 16 O 1.21277 * 119.99604 * 359.97438 * 15 14 12 17 17 C 1.50697 * 120.00019 * 179.97438 * 15 14 12 18 18 H 1.09003 * 109.57851 * 59.99753 * 17 15 14 19 19 C 1.53143 * 109.58028 * 299.73448 * 17 15 14 20 20 N 1.47179 * 109.22329 * 240.23144 * 19 17 15 21 21 C 1.46942 * 111.01794 * 297.89397 * 20 19 17 22 22 C 1.53123 * 109.35333 * 62.03066 * 21 20 19 23 23 C 1.53384 * 109.57815 * 180.25630 * 17 15 14 24 24 C 1.53393 * 108.59783 * 60.84920 * 23 17 15 25 25 C 1.46944 * 111.13057 * 61.91761 * 20 19 17 26 26 C 1.47427 * 125.64610 * 179.97438 * 9 7 2 27 27 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.88335 * 300.43312 * 10 9 7 29 29 H 1.08993 * 109.88164 * 61.44874 * 10 9 7 30 30 H 1.08996 * 110.71913 * 140.55329 * 11 10 9 31 31 H 1.08996 * 110.71966 * 263.65130 * 11 10 9 32 32 H 0.96995 * 120.00608 * 24.99584 * 14 12 11 33 33 H 1.09000 * 109.48321 * 0.15335 * 19 17 15 34 34 H 1.09001 * 109.49015 * 120.21388 * 19 17 15 35 35 H 1.08996 * 109.48899 * 302.07059 * 21 20 19 36 36 H 1.08997 * 109.50820 * 182.00619 * 21 20 19 37 37 H 1.08997 * 109.57845 * 240.24883 * 22 21 20 38 38 H 1.09001 * 109.57961 * 119.85846 * 22 21 20 39 39 H 1.08990 * 110.11772 * 299.41363 * 23 17 15 40 40 H 1.09002 * 109.57661 * 178.80894 * 24 23 17 41 41 H 1.08999 * 109.57538 * 299.19813 * 24 23 17 42 42 H 1.09001 * 109.49508 * 58.00529 * 25 20 19 43 43 H 1.09001 * 109.49340 * 178.05761 * 25 20 19 44 44 H 1.09001 * 110.36238 * 274.74377 * 26 9 7 45 45 H 1.08998 * 110.36877 * 37.06960 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 -0.1375 -2.5328 0.0070 11 6 -0.4483 -4.0440 0.0414 12 6 0.8519 -4.6529 0.6297 13 1 0.8561 -4.5881 1.7178 14 7 1.0293 -6.0385 0.1883 15 6 1.7592 -6.8942 0.9310 16 8 2.2695 -6.5168 1.9645 17 6 1.9413 -8.3196 0.4773 18 1 2.4317 -8.3333 -0.4961 19 6 0.5750 -9.0035 0.3732 20 7 0.5399 -10.1575 1.2861 21 6 1.5524 -11.1552 0.9135 22 6 2.9460 -10.5315 1.0291 23 6 2.8010 -9.0777 1.4966 24 6 2.0780 -9.0685 2.8494 25 6 0.7086 -9.7334 2.6828 26 6 1.9336 -3.7311 0.0076 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5579 -2.0477 0.8879 29 1 -0.5542 -2.0867 -0.8960 30 1 -1.2985 -4.2481 0.6922 31 1 -0.6342 -4.4224 -0.9637 32 1 0.6214 -6.3403 -0.6383 33 1 -0.2074 -8.2966 0.6494 34 1 0.4148 -9.3421 -0.6504 35 1 1.3831 -11.4791 -0.1134 36 1 1.4813 -12.0131 1.5820 37 1 3.4386 -10.5550 0.0571 38 1 3.5375 -11.0908 1.7540 39 1 3.7824 -8.6110 1.5799 40 1 2.6660 -9.6220 3.5815 41 1 1.9461 -8.0402 3.1861 42 1 -0.0751 -9.0224 2.9442 43 1 0.6441 -10.6027 3.3372 44 1 2.1623 -4.0445 -1.0111 45 1 2.8356 -3.7389 0.6194 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014465649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:26 Heat of formation + Delta-G solvation = -26.077568 kcal Electronic energy + Delta-G solvation = -24554.469000 eV Core-core repulsion = 21185.163504 eV Total energy + Delta-G solvation = -3369.305496 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.24002 -40.19945 -38.72991 -35.67565 -33.94164 -33.14944 -32.26615 -31.81359 -30.90990 -28.79017 -26.56601 -24.88112 -24.00035 -23.78836 -22.23183 -21.92593 -21.37095 -19.12325 -18.48794 -18.18811 -17.54375 -17.39544 -17.03072 -16.69268 -16.11168 -15.96436 -15.61048 -14.98029 -14.31798 -14.15352 -14.05983 -13.89748 -13.80078 -13.71493 -13.14456 -13.10128 -13.05745 -13.02105 -12.93600 -12.73184 -12.48336 -12.37177 -12.13218 -12.09728 -11.95458 -11.82959 -11.60218 -11.32211 -11.08237 -10.73904 -10.56684 -10.04209 -9.18663 -8.94705 -7.88736 -5.25276 1.43671 1.47376 1.53698 1.64180 2.12007 2.48662 3.03845 3.29549 3.47389 3.61135 3.67680 3.80153 3.90024 4.02671 4.06842 4.11204 4.19069 4.25389 4.31565 4.37587 4.42618 4.50782 4.57629 4.66316 4.71353 4.83760 4.85930 4.94941 4.98834 5.01967 5.10828 5.11312 5.17332 5.22219 5.23471 5.39220 5.42655 5.56878 5.62900 5.71321 6.08749 6.16122 6.16559 6.60970 7.06620 7.30844 7.72129 8.35467 9.21044 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.038950 B = 0.003198 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.701818 B = 8754.622898 C = 9022.979339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.062 4.062 3 Si 0.980 3.020 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.251 4.251 8 H 0.077 0.923 9 N -0.627 5.627 10 C 0.184 3.816 11 C -0.127 4.127 12 C 0.148 3.852 13 H 0.071 0.929 14 N -0.702 5.702 15 C 0.514 3.486 16 O -0.578 6.578 17 C -0.130 4.130 18 H 0.122 0.878 19 C 0.063 3.937 20 N -0.531 5.531 21 C 0.051 3.949 22 C -0.142 4.142 23 C -0.071 4.071 24 C -0.159 4.159 25 C 0.056 3.944 26 C 0.129 3.871 27 H 0.249 0.751 28 H 0.012 0.988 29 H 0.017 0.983 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.416 0.584 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.087 0.913 44 H 0.033 0.967 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.555 -25.448 -1.341 25.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.255 4.255 3 Si 0.808 3.192 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.380 4.380 8 H 0.095 0.905 9 N -0.354 5.354 10 C 0.059 3.941 11 C -0.166 4.166 12 C 0.041 3.959 13 H 0.089 0.911 14 N -0.354 5.354 15 C 0.302 3.698 16 O -0.458 6.458 17 C -0.153 4.153 18 H 0.140 0.860 19 C -0.066 4.066 20 N -0.251 5.251 21 C -0.077 4.077 22 C -0.181 4.181 23 C -0.090 4.090 24 C -0.198 4.198 25 C -0.073 4.073 26 C 0.003 3.997 27 H 0.058 0.942 28 H 0.030 0.970 29 H 0.036 0.964 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.254 0.746 33 H 0.092 0.908 34 H 0.132 0.868 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.105 0.895 44 H 0.050 0.950 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 0.355 -25.216 -0.658 25.227 hybrid contribution 1.218 1.958 0.061 2.307 sum 1.573 -23.258 -0.596 23.319 Atomic orbital electron populations 1.70148 1.06157 1.25570 1.57763 1.25654 0.96723 1.00956 1.02160 0.85135 0.77217 0.78656 0.78205 1.20094 1.21544 1.20600 1.19393 0.90896 0.83836 1.43884 0.90549 1.44682 1.02727 1.00749 1.87214 1.20941 0.83380 0.91484 0.98315 1.22980 0.96281 0.95196 1.02127 1.21783 0.95374 0.80451 0.98280 0.91104 1.45797 1.53223 1.09521 1.26817 1.21246 0.76934 0.88376 0.83243 1.90646 1.49642 1.79359 1.26138 1.22152 1.01249 0.89817 1.02056 0.86012 1.22386 0.92811 0.92086 0.99322 1.62603 1.47846 1.12339 1.02339 1.22329 0.87942 0.94387 1.03008 1.22262 0.99436 0.93843 1.02568 1.20901 0.97868 0.96136 0.94125 1.22398 0.97961 1.02085 0.97390 1.22170 0.95195 0.99808 0.90121 1.21968 0.95103 0.85348 0.97321 0.94152 0.96993 0.96435 0.89478 0.88862 0.74644 0.90794 0.86780 0.88791 0.89851 0.90168 0.90926 0.91922 0.91661 0.92112 0.92091 0.89502 0.94963 0.96035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.51 10.31 21.65 0.22 -57.29 16 2 C -0.06 -3.59 5.49 84.86 0.47 -3.12 16 3 Si 0.98 46.71 29.55 68.60 2.03 48.74 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 7 C -0.25 -14.69 10.28 84.03 0.86 -13.83 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 9 N -0.63 -33.48 3.39 -691.52 -2.35 -35.83 16 10 C 0.18 9.07 5.38 86.73 0.47 9.54 16 11 C -0.13 -4.37 6.59 31.78 0.21 -4.16 16 12 C 0.15 5.26 3.44 46.46 0.16 5.42 16 13 H 0.07 2.92 7.54 -2.39 -0.02 2.90 16 14 N -0.70 -18.15 4.95 -435.57 -2.16 -20.31 16 15 C 0.51 14.11 6.60 87.66 0.58 14.69 16 16 O -0.58 -21.46 13.38 -3.02 -0.04 -21.50 16 17 C -0.13 -2.39 2.59 -11.36 -0.03 -2.42 16 18 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 19 C 0.06 0.94 5.64 86.30 0.49 1.42 16 20 N -0.53 -8.41 5.22 -894.43 -4.67 -13.09 16 21 C 0.05 0.60 6.09 86.34 0.53 1.13 16 22 C -0.14 -1.85 5.75 30.77 0.18 -1.68 16 23 C -0.07 -1.40 2.59 -10.40 -0.03 -1.42 16 24 C -0.16 -3.54 5.43 30.77 0.17 -3.37 16 25 C 0.06 1.04 6.10 86.34 0.53 1.56 16 26 C 0.13 5.64 6.93 86.94 0.60 6.24 16 27 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 28 H 0.01 0.66 7.37 -2.39 -0.02 0.64 16 29 H 0.02 0.95 7.50 -2.39 -0.02 0.93 16 30 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.09 2.65 8.01 -2.39 -0.02 2.63 16 32 H 0.42 7.65 8.48 -92.71 -0.79 6.86 16 33 H 0.07 1.26 7.46 -2.39 -0.02 1.24 16 34 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 39 H 0.06 1.49 8.12 -2.39 -0.02 1.47 16 40 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.06 1.81 5.57 -2.39 -0.01 1.80 16 42 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.03 1.33 8.14 -2.39 -0.02 1.32 16 45 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -73.14 340.92 -1.61 -74.74 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.18 Total: 14.54 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 5.17 Total: 9.99 kcal Atomic # 7 Polarization: -117.56 SS G_CDS: -8.95 Total: -126.51 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.04 Total: -21.50 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -73.14 -1.61 -74.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014465649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.666 kcal (2) G-P(sol) polarization free energy of solvation -73.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds