Wall clock time and date at job start Tue Mar 31 2020 07:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99864 * 2 1 4 4 H 1.48507 * 109.47223 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47116 * 299.99590 * 3 2 1 6 6 H 1.48502 * 109.47504 * 59.99657 * 3 2 1 7 7 C 1.38812 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99752 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00289 * 0.02562 * 7 2 1 10 10 C 1.47022 * 125.64439 * 0.02562 * 9 7 2 11 11 C 1.54321 * 107.26696 * 178.91902 * 10 9 7 12 12 C 1.55154 * 102.94394 * 337.80918 * 11 10 9 13 13 H 1.09001 * 111.00717 * 277.38601 * 12 11 10 14 14 N 1.46508 * 111.00291 * 153.57270 * 12 11 10 15 15 C 1.34779 * 119.99734 * 155.00089 * 14 12 11 16 16 O 1.21277 * 120.00075 * 0.02562 * 15 14 12 17 17 C 1.50697 * 120.00163 * 180.02562 * 15 14 12 18 18 H 1.09005 * 109.57966 * 60.25695 * 17 15 14 19 19 C 1.53146 * 109.57448 * 299.99943 * 17 15 14 20 20 N 1.46903 * 109.36701 * 240.05963 * 19 17 15 21 21 C 1.46946 * 111.06219 * 298.00192 * 20 19 17 22 22 C 1.53132 * 109.34529 * 61.95927 * 21 20 19 23 23 C 1.53383 * 109.69049 * 180.59314 * 17 15 14 24 24 C 1.53384 * 108.59920 * 60.90195 * 23 17 15 25 25 C 1.46948 * 111.05534 * 62.00401 * 20 19 17 26 26 C 1.47422 * 125.64615 * 179.97438 * 9 7 2 27 27 H 0.96997 * 120.00209 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.88171 * 59.50792 * 10 9 7 29 29 H 1.09000 * 109.88612 * 298.33492 * 10 9 7 30 30 H 1.08995 * 110.72143 * 219.44388 * 11 10 9 31 31 H 1.09002 * 110.87123 * 96.24184 * 11 10 9 32 32 H 0.96996 * 120.00513 * 335.00409 * 14 12 11 33 33 H 1.08994 * 109.49114 * 0.02955 * 19 17 15 34 34 H 1.08998 * 109.48659 * 120.09697 * 19 17 15 35 35 H 1.08993 * 109.48885 * 302.00132 * 21 20 19 36 36 H 1.08998 * 109.51270 * 181.93396 * 21 20 19 37 37 H 1.09002 * 109.57200 * 240.24773 * 22 21 20 38 38 H 1.08999 * 109.67685 * 119.93534 * 22 21 20 39 39 H 1.09001 * 110.10958 * 299.46681 * 23 17 15 40 40 H 1.09001 * 109.58028 * 178.80813 * 24 23 17 41 41 H 1.09005 * 109.58132 * 299.19897 * 24 23 17 42 42 H 1.08996 * 109.49059 * 58.00382 * 25 20 19 43 43 H 1.09006 * 109.48756 * 178.05096 * 25 20 19 44 44 H 1.08999 * 110.36557 * 85.31351 * 26 9 7 45 45 H 1.08998 * 110.36895 * 322.98780 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1375 -2.5327 -0.0005 11 6 -0.4484 -4.0441 -0.0279 12 6 0.8524 -4.6559 -0.6117 13 1 0.8579 -4.5966 -1.7001 14 7 1.0293 -6.0394 -0.1632 15 6 1.7601 -6.8987 -0.9008 16 8 2.2717 -6.5266 -1.9356 17 6 1.9416 -8.3219 -0.4399 18 1 0.9690 -8.8083 -0.3644 19 6 2.6291 -8.3343 0.9285 20 7 3.8983 -9.0674 0.8295 21 6 3.6707 -10.4680 0.4473 22 6 3.0123 -10.5162 -0.9344 23 6 2.8199 -9.0817 -1.4419 24 6 4.1912 -8.3977 -1.5074 25 6 4.8166 -8.4086 -0.1097 26 6 1.9336 -3.7311 0.0005 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5568 -2.0520 -0.8843 29 1 -0.5550 -2.0847 0.9011 30 1 -1.2979 -4.2513 -0.6786 31 1 -0.6340 -4.4206 0.9780 32 1 0.6205 -6.3370 0.6645 33 1 2.8245 -7.3103 1.2466 34 1 1.9820 -8.8243 1.6561 35 1 3.0166 -10.9427 1.1786 36 1 4.6237 -10.9959 0.4148 37 1 2.0437 -11.0105 -0.8603 38 1 3.6507 -11.0658 -1.6261 39 1 2.3459 -9.0917 -2.4234 40 1 4.8363 -8.9381 -2.2002 41 1 4.0704 -7.3684 -1.8452 42 1 4.9969 -7.3842 0.2162 43 1 5.7606 -8.9529 -0.1374 44 1 2.1660 -4.0423 1.0190 45 1 2.8333 -3.7403 -0.6146 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014465655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:30 Heat of formation + Delta-G solvation = -3.470552 kcal Electronic energy + Delta-G solvation = -24677.739813 eV Core-core repulsion = 21309.414630 eV Total energy + Delta-G solvation = -3368.325182 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.34983 -38.97331 -37.13750 -34.11440 -32.39531 -32.19546 -31.17181 -31.01473 -29.11072 -27.11498 -24.72707 -23.79488 -23.21021 -23.03646 -20.71395 -20.35534 -19.86601 -17.74592 -17.35890 -16.92649 -16.55715 -16.45011 -15.82178 -15.05652 -14.64349 -14.57109 -14.09197 -13.48687 -13.22977 -13.04240 -12.91834 -12.45752 -12.43804 -12.34571 -12.29112 -12.18603 -12.02014 -11.80199 -11.64313 -11.18326 -11.00953 -10.91052 -10.77272 -10.51557 -10.37668 -10.29051 -10.05928 -9.90576 -9.71989 -9.39129 -8.73875 -8.59709 -8.40088 -6.83953 -5.71434 -3.04974 2.77014 3.30692 3.41272 3.47058 3.49471 3.78050 4.31476 4.44526 4.53328 4.67323 4.83408 4.94893 4.98456 4.99650 5.11408 5.19712 5.26577 5.30446 5.41497 5.44595 5.57369 5.60648 5.64531 5.73517 5.74664 5.78723 5.81430 5.95906 6.01629 6.04355 6.17647 6.29916 6.36090 6.41449 6.60926 6.68975 6.85669 6.87769 6.98413 7.53835 7.57397 7.71210 7.82104 8.24535 8.42201 9.21900 9.81832 10.46629 11.40543 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.030177 B = 0.003463 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.650617 B = 8082.647757 C = 8460.533177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.149 4.149 12 C 0.127 3.873 13 H 0.095 0.905 14 N -0.716 5.716 15 C 0.517 3.483 16 O -0.535 6.535 17 C -0.140 4.140 18 H 0.097 0.903 19 C 0.060 3.940 20 N -0.527 5.527 21 C 0.052 3.948 22 C -0.151 4.151 23 C -0.065 4.065 24 C -0.160 4.160 25 C 0.051 3.949 26 C 0.131 3.869 27 H 0.252 0.748 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.397 0.603 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.019 0.981 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.864 -22.247 1.320 22.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.355 4.355 8 H 0.097 0.903 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.188 4.188 12 C 0.022 3.978 13 H 0.113 0.887 14 N -0.366 5.366 15 C 0.303 3.697 16 O -0.412 6.412 17 C -0.163 4.163 18 H 0.115 0.885 19 C -0.069 4.069 20 N -0.247 5.247 21 C -0.077 4.077 22 C -0.190 4.190 23 C -0.084 4.084 24 C -0.199 4.199 25 C -0.078 4.078 26 C 0.003 3.997 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.230 0.770 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.115 0.885 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.037 0.963 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.432 -21.726 1.072 22.022 hybrid contribution -0.312 0.731 -0.442 0.909 sum 3.120 -20.996 0.630 21.235 Atomic orbital electron populations 1.69959 1.04878 1.24950 1.57323 1.24804 0.95753 0.97686 1.02239 0.86023 0.78763 0.83649 0.77221 1.20470 1.21723 1.21747 1.19126 0.90531 0.82272 1.43529 0.90334 1.44400 1.01629 0.99815 1.87238 1.21139 0.84533 0.87447 1.01447 1.23177 0.95903 1.00048 0.99710 1.22301 0.96811 0.78781 0.99939 0.88671 1.46042 1.52854 1.11619 1.26095 1.20457 0.78155 0.87058 0.84027 1.90643 1.47550 1.78784 1.24246 1.22114 1.01534 0.93893 0.98799 0.88520 1.22263 0.90490 1.00304 0.93837 1.62510 1.11946 1.02202 1.48043 1.22218 1.00843 0.89787 0.94846 1.22308 1.01500 0.96621 0.98552 1.20875 0.95892 0.93431 0.98236 1.22461 0.95422 1.03982 0.98045 1.22245 0.95431 0.99846 0.90240 1.21801 0.94799 0.86194 0.96898 0.93794 0.93279 0.93579 0.91719 0.92063 0.76964 0.89768 0.89783 0.90658 0.90647 0.91677 0.91366 0.89931 0.92083 0.88509 0.90572 0.90796 0.96334 0.94050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.19 10.31 55.49 0.57 -26.62 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.23 -6.43 10.28 -15.06 -0.15 -6.59 16 8 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 9 N -0.60 -15.67 3.39 -170.09 -0.58 -16.25 16 10 C 0.18 4.31 5.37 -3.07 -0.02 4.30 16 11 C -0.15 -2.67 6.60 -24.90 -0.16 -2.83 16 12 C 0.13 2.28 3.42 -65.79 -0.23 2.05 16 13 H 0.10 1.92 7.54 -51.93 -0.39 1.53 16 14 N -0.72 -9.89 4.95 -51.74 -0.26 -10.15 16 15 C 0.52 7.33 6.60 -10.99 -0.07 7.26 16 16 O -0.54 -9.67 13.41 5.56 0.07 -9.60 16 17 C -0.14 -1.46 2.59 -91.50 -0.24 -1.70 16 18 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 19 C 0.06 0.58 5.60 -3.75 -0.02 0.56 16 20 N -0.53 -5.29 5.22 -234.29 -1.22 -6.51 16 21 C 0.05 0.42 6.09 -3.73 -0.02 0.39 16 22 C -0.15 -1.22 5.75 -26.46 -0.15 -1.37 16 23 C -0.06 -0.69 2.59 -90.02 -0.23 -0.92 16 24 C -0.16 -1.87 5.43 -26.47 -0.14 -2.01 16 25 C 0.05 0.54 6.09 -3.73 -0.02 0.52 16 26 C 0.13 2.80 6.93 -2.54 -0.02 2.79 16 27 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.05 1.31 7.38 -51.93 -0.38 0.93 16 29 H 0.05 1.21 7.51 -51.93 -0.39 0.82 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.97 8.00 -51.93 -0.42 0.55 16 32 H 0.40 4.32 8.47 -40.82 -0.35 3.98 16 33 H 0.08 0.93 7.46 -51.93 -0.39 0.54 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 1.44 5.60 -51.93 -0.29 1.15 16 42 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 340.91 15.07 5.14 5.14 Total: -1.00 -31.97 340.91 -10.52 -42.48 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.64 Total: 2.05 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -1.58 Total: 2.10 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: -1.48 Total: -59.52 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.07 Total: -9.60 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.97 -10.52 -42.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014465655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.014 kcal (2) G-P(sol) polarization free energy of solvation -31.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds