Wall clock time and date at job start Tue Mar 31 2020 07:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99864 * 2 1 4 4 H 1.48507 * 109.47223 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47116 * 299.99590 * 3 2 1 6 6 H 1.48502 * 109.47504 * 59.99657 * 3 2 1 7 7 C 1.38812 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99752 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00289 * 0.02562 * 7 2 1 10 10 C 1.47022 * 125.64439 * 0.02562 * 9 7 2 11 11 C 1.54321 * 107.26696 * 178.91902 * 10 9 7 12 12 C 1.55154 * 102.94394 * 337.80918 * 11 10 9 13 13 H 1.09001 * 111.00717 * 277.38601 * 12 11 10 14 14 N 1.46508 * 111.00291 * 153.57270 * 12 11 10 15 15 C 1.34779 * 119.99734 * 155.00089 * 14 12 11 16 16 O 1.21277 * 120.00075 * 0.02562 * 15 14 12 17 17 C 1.50697 * 120.00163 * 180.02562 * 15 14 12 18 18 H 1.09005 * 109.57966 * 60.25695 * 17 15 14 19 19 C 1.53146 * 109.57448 * 299.99943 * 17 15 14 20 20 N 1.46903 * 109.36701 * 240.05963 * 19 17 15 21 21 C 1.46946 * 111.06219 * 298.00192 * 20 19 17 22 22 C 1.53132 * 109.34529 * 61.95927 * 21 20 19 23 23 C 1.53383 * 109.69049 * 180.59314 * 17 15 14 24 24 C 1.53384 * 108.59920 * 60.90195 * 23 17 15 25 25 C 1.46948 * 111.05534 * 62.00401 * 20 19 17 26 26 C 1.47422 * 125.64615 * 179.97438 * 9 7 2 27 27 H 0.96997 * 120.00209 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.88171 * 59.50792 * 10 9 7 29 29 H 1.09000 * 109.88612 * 298.33492 * 10 9 7 30 30 H 1.08995 * 110.72143 * 219.44388 * 11 10 9 31 31 H 1.09002 * 110.87123 * 96.24184 * 11 10 9 32 32 H 0.96996 * 120.00513 * 335.00409 * 14 12 11 33 33 H 1.08994 * 109.49114 * 0.02955 * 19 17 15 34 34 H 1.08998 * 109.48659 * 120.09697 * 19 17 15 35 35 H 1.08993 * 109.48885 * 302.00132 * 21 20 19 36 36 H 1.08998 * 109.51270 * 181.93396 * 21 20 19 37 37 H 1.09002 * 109.57200 * 240.24773 * 22 21 20 38 38 H 1.08999 * 109.67685 * 119.93534 * 22 21 20 39 39 H 1.09001 * 110.10958 * 299.46681 * 23 17 15 40 40 H 1.09001 * 109.58028 * 178.80813 * 24 23 17 41 41 H 1.09005 * 109.58132 * 299.19897 * 24 23 17 42 42 H 1.08996 * 109.49059 * 58.00382 * 25 20 19 43 43 H 1.09006 * 109.48756 * 178.05096 * 25 20 19 44 44 H 1.08999 * 110.36557 * 85.31351 * 26 9 7 45 45 H 1.08998 * 110.36895 * 322.98780 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1375 -2.5327 -0.0005 11 6 -0.4484 -4.0441 -0.0279 12 6 0.8524 -4.6559 -0.6117 13 1 0.8579 -4.5966 -1.7001 14 7 1.0293 -6.0394 -0.1632 15 6 1.7601 -6.8987 -0.9008 16 8 2.2717 -6.5266 -1.9356 17 6 1.9416 -8.3219 -0.4399 18 1 0.9690 -8.8083 -0.3644 19 6 2.6291 -8.3343 0.9285 20 7 3.8983 -9.0674 0.8295 21 6 3.6707 -10.4680 0.4473 22 6 3.0123 -10.5162 -0.9344 23 6 2.8199 -9.0817 -1.4419 24 6 4.1912 -8.3977 -1.5074 25 6 4.8166 -8.4086 -0.1097 26 6 1.9336 -3.7311 0.0005 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5568 -2.0520 -0.8843 29 1 -0.5550 -2.0847 0.9011 30 1 -1.2979 -4.2513 -0.6786 31 1 -0.6340 -4.4206 0.9780 32 1 0.6205 -6.3370 0.6645 33 1 2.8245 -7.3103 1.2466 34 1 1.9820 -8.8243 1.6561 35 1 3.0166 -10.9427 1.1786 36 1 4.6237 -10.9959 0.4148 37 1 2.0437 -11.0105 -0.8603 38 1 3.6507 -11.0658 -1.6261 39 1 2.3459 -9.0917 -2.4234 40 1 4.8363 -8.9381 -2.2002 41 1 4.0704 -7.3684 -1.8452 42 1 4.9969 -7.3842 0.2162 43 1 5.7606 -8.9529 -0.1374 44 1 2.1660 -4.0423 1.0190 45 1 2.8333 -3.7403 -0.6146 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014465655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:30 Heat of formation + Delta-G solvation = -26.419269 kcal Electronic energy + Delta-G solvation = -24678.734944 eV Core-core repulsion = 21309.414630 eV Total energy + Delta-G solvation = -3369.320314 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.24963 -40.21015 -38.73846 -35.67644 -33.94046 -33.16401 -32.27345 -31.81908 -30.90513 -28.81624 -26.56101 -24.88618 -24.00916 -23.79654 -22.25810 -21.92748 -21.34289 -19.11767 -18.49805 -18.23325 -17.58965 -17.30623 -17.02067 -16.69495 -16.12781 -16.00291 -15.60513 -14.94018 -14.43367 -14.15185 -13.97364 -13.90280 -13.81753 -13.69389 -13.15407 -13.10980 -13.06647 -13.04420 -12.89033 -12.79548 -12.47885 -12.40212 -12.13652 -12.01414 -11.97783 -11.83010 -11.59760 -11.34103 -11.07872 -10.75161 -10.52476 -10.06867 -9.19147 -8.94477 -7.89004 -5.25312 1.44091 1.45319 1.55806 1.63994 2.12404 2.48458 3.03885 3.29638 3.47431 3.61495 3.66552 3.81364 3.88795 4.02862 4.07345 4.09915 4.18999 4.24705 4.31459 4.37417 4.41647 4.50363 4.57892 4.66232 4.70894 4.83909 4.84928 4.94928 4.98809 5.01655 5.09977 5.11343 5.17109 5.22529 5.23549 5.39738 5.42214 5.56659 5.62824 5.71164 6.07970 6.16055 6.17587 6.61010 7.06815 7.30875 7.72038 8.35304 9.21202 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.030177 B = 0.003463 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.650617 B = 8082.647757 C = 8460.533177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.062 4.062 3 Si 0.980 3.020 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.287 1.287 7 C -0.248 4.248 8 H 0.076 0.924 9 N -0.626 5.626 10 C 0.184 3.816 11 C -0.127 4.127 12 C 0.147 3.853 13 H 0.071 0.929 14 N -0.702 5.702 15 C 0.514 3.486 16 O -0.579 6.579 17 C -0.129 4.129 18 H 0.128 0.872 19 C 0.061 3.939 20 N -0.533 5.533 21 C 0.051 3.949 22 C -0.141 4.141 23 C -0.069 4.069 24 C -0.159 4.159 25 C 0.054 3.946 26 C 0.131 3.869 27 H 0.249 0.751 28 H 0.012 0.988 29 H 0.018 0.982 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.416 0.584 33 H 0.066 0.934 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.086 0.914 44 H 0.032 0.968 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.583 -24.973 2.645 25.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.255 4.255 3 Si 0.808 3.192 4 H -0.194 1.194 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.377 4.377 8 H 0.094 0.906 9 N -0.353 5.353 10 C 0.059 3.941 11 C -0.166 4.166 12 C 0.040 3.960 13 H 0.089 0.911 14 N -0.354 5.354 15 C 0.302 3.698 16 O -0.458 6.458 17 C -0.151 4.151 18 H 0.146 0.854 19 C -0.068 4.068 20 N -0.253 5.253 21 C -0.077 4.077 22 C -0.180 4.180 23 C -0.089 4.089 24 C -0.198 4.198 25 C -0.074 4.074 26 C 0.004 3.996 27 H 0.058 0.942 28 H 0.030 0.970 29 H 0.036 0.964 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.254 0.746 33 H 0.085 0.915 34 H 0.134 0.866 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.105 0.895 44 H 0.049 0.951 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 3.151 -24.508 2.428 24.829 hybrid contribution -0.158 1.568 -0.886 1.808 sum 2.992 -22.940 1.542 23.186 Atomic orbital electron populations 1.70166 1.06142 1.25395 1.57959 1.25644 0.96721 1.00916 1.02228 0.84997 0.78024 0.79267 0.76949 1.19358 1.21736 1.21350 1.19458 0.90880 0.83806 1.43557 0.90571 1.44689 1.02721 1.00744 1.87165 1.20937 0.83391 0.91466 0.98312 1.22986 0.96269 0.95191 1.02159 1.21740 0.95406 0.80537 0.98291 0.91114 1.45797 1.53007 1.09649 1.26914 1.21259 0.76845 0.88535 0.83196 1.90648 1.49011 1.79806 1.26336 1.22148 1.03190 0.90777 0.99015 0.85408 1.22332 0.90788 0.99931 0.93714 1.62526 1.11915 1.03249 1.47618 1.22340 1.01777 0.88435 0.95147 1.22255 1.02694 0.94496 0.98549 1.20898 0.94858 0.95243 0.97860 1.22384 0.96806 1.01882 0.98743 1.22162 0.96374 0.99146 0.89763 1.21901 0.95064 0.85349 0.97295 0.94182 0.96970 0.96405 0.89420 0.88876 0.74648 0.91506 0.86642 0.88683 0.89963 0.89830 0.90871 0.91442 0.91516 0.92366 0.92674 0.89519 0.95071 0.96136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.49 10.31 21.65 0.22 -57.27 16 2 C -0.06 -3.60 5.49 84.86 0.47 -3.14 16 3 Si 0.98 46.83 29.55 68.60 2.03 48.86 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 7 C -0.25 -14.52 10.28 84.03 0.86 -13.66 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 9 N -0.63 -33.45 3.39 -692.05 -2.35 -35.80 16 10 C 0.18 9.07 5.37 86.73 0.47 9.54 16 11 C -0.13 -4.38 6.60 31.78 0.21 -4.17 16 12 C 0.15 5.23 3.42 46.37 0.16 5.39 16 13 H 0.07 2.92 7.54 -2.39 -0.02 2.90 16 14 N -0.70 -18.19 4.95 -435.99 -2.16 -20.34 16 15 C 0.51 14.08 6.60 87.66 0.58 14.66 16 16 O -0.58 -21.46 13.41 -3.02 -0.04 -21.50 16 17 C -0.13 -2.34 2.59 -11.36 -0.03 -2.37 16 18 H 0.13 1.61 8.14 -2.38 -0.02 1.59 16 19 C 0.06 1.00 5.60 86.35 0.48 1.49 16 20 N -0.53 -9.27 5.22 -895.15 -4.67 -13.94 16 21 C 0.05 0.62 6.09 86.34 0.53 1.15 16 22 C -0.14 -1.79 5.75 30.77 0.18 -1.61 16 23 C -0.07 -1.34 2.59 -10.41 -0.03 -1.37 16 24 C -0.16 -3.69 5.43 30.77 0.17 -3.53 16 25 C 0.05 1.12 6.09 86.34 0.53 1.65 16 26 C 0.13 5.72 6.93 86.85 0.60 6.32 16 27 H 0.25 14.57 8.31 -92.71 -0.77 13.79 16 28 H 0.01 0.67 7.38 -2.39 -0.02 0.65 16 29 H 0.02 0.96 7.51 -2.39 -0.02 0.94 16 30 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.09 2.65 8.00 -2.39 -0.02 2.63 16 32 H 0.42 7.67 8.47 -92.71 -0.78 6.89 16 33 H 0.07 1.34 7.46 -2.39 -0.02 1.32 16 34 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 1.52 8.12 -2.39 -0.02 1.50 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.06 1.82 5.60 -2.38 -0.01 1.81 16 42 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.09 1.54 8.14 -2.38 -0.02 1.53 16 44 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -73.42 340.91 -1.61 -75.03 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.19 Total: 14.61 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 5.17 Total: 10.35 kcal Atomic # 7 Polarization: -118.40 SS G_CDS: -8.95 Total: -127.36 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.04 Total: -21.50 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -73.42 -1.61 -75.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014465655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.611 kcal (2) G-P(sol) polarization free energy of solvation -73.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds