Wall clock time and date at job start Tue Mar 31 2020 06:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99891 * 2 1 4 4 H 1.48504 * 109.46976 * 270.00046 * 3 2 1 5 5 H 1.48497 * 109.47099 * 30.00011 * 3 2 1 6 6 H 1.48497 * 109.47237 * 150.00239 * 3 2 1 7 7 C 1.38814 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00095 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00102 * 359.97438 * 7 2 1 10 10 C 1.47029 * 125.64856 * 359.97438 * 9 7 2 11 11 C 1.54318 * 107.27250 * 178.98440 * 10 9 7 12 12 C 1.55158 * 102.94081 * 337.80204 * 11 10 9 13 13 H 1.09000 * 111.00436 * 153.61507 * 12 11 10 14 14 N 1.46504 * 111.00701 * 277.42835 * 12 11 10 15 15 C 1.34769 * 120.00459 * 204.99826 * 14 12 11 16 16 O 1.21282 * 119.99857 * 0.02562 * 15 14 12 17 17 C 1.50697 * 120.00518 * 179.97438 * 15 14 12 18 18 C 1.54140 * 110.74136 * 83.98658 * 17 15 14 19 19 C 1.55167 * 102.88509 * 262.58339 * 18 17 15 20 20 C 1.54830 * 101.65892 * 323.84229 * 19 18 17 21 21 N 1.47864 * 110.77317 * 325.10678 * 17 15 14 22 22 C 1.47957 * 108.36826 * 238.95781 * 21 17 15 23 23 C 1.54832 * 105.06689 * 22.81373 * 22 21 17 24 24 C 1.54134 * 111.33756 * 205.83717 * 17 15 14 25 25 C 1.47416 * 125.64917 * 180.02562 * 9 7 2 26 26 H 0.96996 * 120.00294 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.88328 * 59.55636 * 10 9 7 28 28 H 1.09001 * 109.87993 * 298.40136 * 10 9 7 29 29 H 1.08997 * 110.71868 * 219.44515 * 11 10 9 30 30 H 1.08997 * 110.87771 * 96.23551 * 11 10 9 31 31 H 0.97007 * 119.99341 * 25.00290 * 14 12 11 32 32 H 1.09007 * 110.72704 * 144.24064 * 18 17 15 33 33 H 1.08996 * 110.72873 * 20.93687 * 18 17 15 34 34 H 1.09003 * 110.98340 * 81.93742 * 19 18 17 35 35 H 1.09005 * 110.98782 * 205.74642 * 19 18 17 36 36 H 1.09001 * 110.31963 * 155.57068 * 20 19 18 37 37 H 1.08997 * 110.32651 * 277.77867 * 20 19 18 38 38 H 1.09003 * 110.32015 * 141.71452 * 22 21 17 39 39 H 1.08998 * 110.31947 * 263.91292 * 22 21 17 40 40 H 1.09001 * 110.98993 * 205.23174 * 23 22 21 41 41 H 1.08999 * 110.99352 * 81.42022 * 23 22 21 42 42 H 1.08992 * 110.73189 * 216.11510 * 24 17 15 43 43 H 1.09003 * 110.72560 * 339.42098 * 24 17 15 44 44 H 1.09004 * 110.36920 * 85.25330 * 25 9 7 45 45 H 1.08997 * 110.36783 * 322.92510 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1375 -2.5328 0.0028 11 6 -0.4485 -4.0442 -0.0224 12 6 0.8515 -4.6566 -0.6076 13 1 0.9832 -5.6858 -0.2736 14 7 0.8570 -4.5775 -2.0705 15 6 1.5883 -5.4515 -2.7899 16 8 2.2415 -6.3040 -2.2263 17 6 1.5936 -5.3705 -4.2947 18 6 2.6207 -4.3295 -4.7817 19 6 1.7484 -3.0691 -5.0225 20 6 0.4387 -3.6936 -5.5630 21 7 0.2696 -4.9510 -4.8020 22 6 -0.2401 -6.0072 -5.7042 23 6 0.5087 -7.2944 -5.2804 24 6 1.9140 -6.7384 -4.9289 25 6 1.9335 -3.7311 0.0028 26 1 -0.4850 0.8400 0.0004 27 1 -0.5583 -2.0529 -0.8808 28 1 -0.5537 -2.0837 0.9046 29 1 -1.2989 -4.2521 -0.6717 30 1 -0.6325 -4.4197 0.9841 31 1 0.3343 -3.8959 -2.5213 32 1 3.0910 -4.6562 -5.7093 33 1 3.3706 -4.1390 -4.0140 34 1 1.5700 -2.5339 -4.0899 35 1 2.2046 -2.4147 -5.7654 36 1 -0.4026 -3.0249 -5.3811 37 1 0.5317 -3.9054 -6.6281 38 1 -1.3146 -6.1329 -5.5709 39 1 -0.0128 -5.7610 -6.7414 40 1 0.5649 -8.0033 -6.1065 41 1 0.0396 -7.7499 -4.4084 42 1 2.5163 -6.6148 -5.8288 43 1 2.4175 -7.3873 -4.2123 44 1 2.1670 -4.0410 1.0214 45 1 2.8326 -3.7411 -0.6132 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015089495.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:19 Heat of formation + Delta-G solvation = -2.125426 kcal Electronic energy + Delta-G solvation = -25419.545505 eV Core-core repulsion = 22051.278652 eV Total energy + Delta-G solvation = -3368.266853 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.85412 -38.53206 -36.95970 -34.15455 -33.45420 -31.67666 -31.33387 -29.17446 -28.33482 -27.04803 -25.53408 -24.46244 -22.53829 -21.59479 -20.76377 -20.05282 -19.74698 -19.06864 -17.33650 -16.74118 -16.15304 -15.71492 -14.98279 -14.60530 -14.50864 -14.13901 -14.01308 -13.79095 -13.59147 -13.24726 -12.93873 -12.56001 -12.20727 -12.09263 -11.85780 -11.73739 -11.63834 -11.51822 -11.13005 -11.02634 -10.94566 -10.88194 -10.86108 -10.60702 -10.43195 -10.28568 -10.10563 -9.89133 -9.64058 -9.50399 -8.64916 -8.53479 -8.38255 -6.78061 -5.69219 -3.01472 2.97556 3.40018 3.46004 3.47643 3.65078 3.85287 4.42570 4.46434 4.51961 4.71085 4.90118 4.97262 5.07358 5.15782 5.28629 5.40287 5.42084 5.49485 5.50984 5.53351 5.64319 5.73065 5.75965 5.79497 5.85576 5.93362 5.93600 5.97197 6.05955 6.13461 6.25484 6.31034 6.47404 6.57891 6.62991 6.68772 6.74465 6.84428 7.20225 7.57713 7.62143 7.83169 8.12517 8.28163 8.73337 9.24960 9.85072 10.51745 11.42589 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019137 B = 0.005114 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.753710 B = 5473.655921 C = 6035.390419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.223 4.223 8 H 0.075 0.925 9 N -0.603 5.603 10 C 0.177 3.823 11 C -0.153 4.153 12 C 0.126 3.874 13 H 0.087 0.913 14 N -0.685 5.685 15 C 0.542 3.458 16 O -0.559 6.559 17 C 0.070 3.930 18 C -0.125 4.125 19 C -0.136 4.136 20 C 0.033 3.967 21 N -0.504 5.504 22 C 0.036 3.964 23 C -0.132 4.132 24 C -0.124 4.124 25 C 0.126 3.874 26 H 0.251 0.749 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.408 0.592 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.093 0.907 44 H 0.026 0.974 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.790 -11.337 -12.823 17.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.351 4.351 8 H 0.093 0.907 9 N -0.330 5.330 10 C 0.053 3.947 11 C -0.192 4.192 12 C 0.020 3.980 13 H 0.105 0.895 14 N -0.333 5.333 15 C 0.326 3.674 16 O -0.438 6.438 17 C -0.022 4.022 18 C -0.163 4.163 19 C -0.174 4.174 20 C -0.095 4.095 21 N -0.229 5.229 22 C -0.092 4.092 23 C -0.170 4.170 24 C -0.163 4.163 25 C -0.001 4.001 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.244 0.756 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.112 0.888 44 H 0.044 0.956 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.784 -11.601 -11.938 16.665 hybrid contribution 0.719 1.249 -0.855 1.676 sum -0.066 -10.352 -12.793 16.457 Atomic orbital electron populations 1.69957 1.04776 1.24873 1.57458 1.24753 0.95675 0.97457 1.02527 0.86158 0.78638 0.83730 0.77489 1.21737 1.21733 1.20792 1.19042 0.90368 0.82440 1.43284 0.90665 1.44464 1.01491 0.99821 1.87174 1.21147 0.84481 0.87986 1.01111 1.23206 0.95925 0.99981 1.00111 1.22137 0.97193 0.99174 0.79485 0.89505 1.45695 1.47466 1.33647 1.06535 1.19836 0.78747 0.80749 0.88049 1.90638 1.43895 1.37221 1.72073 1.22397 0.90022 0.96600 0.93229 1.22828 0.97511 0.94366 1.01638 1.22860 0.94621 0.97120 1.02832 1.23338 0.98736 0.91606 0.95783 1.65308 1.21527 1.03479 1.32602 1.23285 1.00414 0.90871 0.94660 1.22776 0.95397 0.97140 1.01682 1.22792 0.97612 0.95119 1.00780 1.21936 0.94785 0.86462 0.96957 0.93860 0.93613 0.93910 0.91567 0.91173 0.75579 0.90522 0.90142 0.89386 0.90403 0.89490 0.93067 0.89951 0.93010 0.90716 0.90618 0.90803 0.88839 0.95627 0.94161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.63 10.31 55.49 0.57 -26.06 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.22 -6.18 10.28 -15.06 -0.15 -6.34 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -15.23 3.39 -170.07 -0.58 -15.81 16 10 C 0.18 4.21 5.36 -3.06 -0.02 4.19 16 11 C -0.15 -2.85 6.55 -24.90 -0.16 -3.02 16 12 C 0.13 2.38 3.43 -65.77 -0.23 2.15 16 13 H 0.09 1.61 7.54 -51.93 -0.39 1.22 16 14 N -0.68 -12.17 5.10 -51.72 -0.26 -12.44 16 15 C 0.54 9.37 6.68 -10.99 -0.07 9.29 16 16 O -0.56 -11.16 15.36 5.56 0.09 -11.07 16 17 C 0.07 0.96 0.91 -131.04 -0.12 0.84 16 18 C -0.12 -1.58 6.03 -24.99 -0.15 -1.74 16 19 C -0.14 -1.69 7.07 -24.62 -0.17 -1.87 16 20 C 0.03 0.37 6.72 -2.28 -0.02 0.36 16 21 N -0.50 -6.28 4.73 -214.08 -1.01 -7.29 16 22 C 0.04 0.36 6.72 -2.28 -0.02 0.35 16 23 C -0.13 -1.34 7.07 -24.62 -0.17 -1.52 16 24 C -0.12 -1.47 6.01 -24.99 -0.15 -1.62 16 25 C 0.13 2.75 6.93 -2.53 -0.02 2.73 16 26 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.05 1.18 7.38 -51.93 -0.38 0.80 16 28 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.41 7.31 8.09 -40.82 -0.33 6.98 16 32 H 0.08 0.81 7.30 -51.93 -0.38 0.43 16 33 H 0.08 1.16 7.85 -51.93 -0.41 0.75 16 34 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.49 7.08 -51.93 -0.37 0.12 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.46 7.08 -51.93 -0.37 0.09 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.07 0.74 7.30 -51.93 -0.38 0.36 16 43 H 0.09 1.27 6.91 -51.93 -0.36 0.91 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 346.61 15.07 5.22 5.22 Total: -1.00 -30.70 346.61 -10.07 -40.77 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -7.53 Total: 6.18 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -1.54 Total: 3.49 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -1.28 Total: -61.59 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.70 -10.07 -40.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015089495.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.647 kcal (2) G-P(sol) polarization free energy of solvation -30.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds