Wall clock time and date at job start Tue Mar 31 2020 06:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99891 * 2 1 4 4 H 1.48504 * 109.46976 * 270.00046 * 3 2 1 5 5 H 1.48497 * 109.47099 * 30.00011 * 3 2 1 6 6 H 1.48497 * 109.47237 * 150.00239 * 3 2 1 7 7 C 1.38814 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00095 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00102 * 359.97438 * 7 2 1 10 10 C 1.47029 * 125.64856 * 359.97438 * 9 7 2 11 11 C 1.54318 * 107.27250 * 178.98440 * 10 9 7 12 12 C 1.55158 * 102.94081 * 337.80204 * 11 10 9 13 13 H 1.09000 * 111.00436 * 153.61507 * 12 11 10 14 14 N 1.46504 * 111.00701 * 277.42835 * 12 11 10 15 15 C 1.34769 * 120.00459 * 204.99826 * 14 12 11 16 16 O 1.21282 * 119.99857 * 0.02562 * 15 14 12 17 17 C 1.50697 * 120.00518 * 179.97438 * 15 14 12 18 18 C 1.54140 * 110.74136 * 83.98658 * 17 15 14 19 19 C 1.55167 * 102.88509 * 262.58339 * 18 17 15 20 20 C 1.54830 * 101.65892 * 323.84229 * 19 18 17 21 21 N 1.47864 * 110.77317 * 325.10678 * 17 15 14 22 22 C 1.47957 * 108.36826 * 238.95781 * 21 17 15 23 23 C 1.54832 * 105.06689 * 22.81373 * 22 21 17 24 24 C 1.54134 * 111.33756 * 205.83717 * 17 15 14 25 25 C 1.47416 * 125.64917 * 180.02562 * 9 7 2 26 26 H 0.96996 * 120.00294 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.88328 * 59.55636 * 10 9 7 28 28 H 1.09001 * 109.87993 * 298.40136 * 10 9 7 29 29 H 1.08997 * 110.71868 * 219.44515 * 11 10 9 30 30 H 1.08997 * 110.87771 * 96.23551 * 11 10 9 31 31 H 0.97007 * 119.99341 * 25.00290 * 14 12 11 32 32 H 1.09007 * 110.72704 * 144.24064 * 18 17 15 33 33 H 1.08996 * 110.72873 * 20.93687 * 18 17 15 34 34 H 1.09003 * 110.98340 * 81.93742 * 19 18 17 35 35 H 1.09005 * 110.98782 * 205.74642 * 19 18 17 36 36 H 1.09001 * 110.31963 * 155.57068 * 20 19 18 37 37 H 1.08997 * 110.32651 * 277.77867 * 20 19 18 38 38 H 1.09003 * 110.32015 * 141.71452 * 22 21 17 39 39 H 1.08998 * 110.31947 * 263.91292 * 22 21 17 40 40 H 1.09001 * 110.98993 * 205.23174 * 23 22 21 41 41 H 1.08999 * 110.99352 * 81.42022 * 23 22 21 42 42 H 1.08992 * 110.73189 * 216.11510 * 24 17 15 43 43 H 1.09003 * 110.72560 * 339.42098 * 24 17 15 44 44 H 1.09004 * 110.36920 * 85.25330 * 25 9 7 45 45 H 1.08997 * 110.36783 * 322.92510 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1375 -2.5328 0.0028 11 6 -0.4485 -4.0442 -0.0224 12 6 0.8515 -4.6566 -0.6076 13 1 0.9832 -5.6858 -0.2736 14 7 0.8570 -4.5775 -2.0705 15 6 1.5883 -5.4515 -2.7899 16 8 2.2415 -6.3040 -2.2263 17 6 1.5936 -5.3705 -4.2947 18 6 2.6207 -4.3295 -4.7817 19 6 1.7484 -3.0691 -5.0225 20 6 0.4387 -3.6936 -5.5630 21 7 0.2696 -4.9510 -4.8020 22 6 -0.2401 -6.0072 -5.7042 23 6 0.5087 -7.2944 -5.2804 24 6 1.9140 -6.7384 -4.9289 25 6 1.9335 -3.7311 0.0028 26 1 -0.4850 0.8400 0.0004 27 1 -0.5583 -2.0529 -0.8808 28 1 -0.5537 -2.0837 0.9046 29 1 -1.2989 -4.2521 -0.6717 30 1 -0.6325 -4.4197 0.9841 31 1 0.3343 -3.8959 -2.5213 32 1 3.0910 -4.6562 -5.7093 33 1 3.3706 -4.1390 -4.0140 34 1 1.5700 -2.5339 -4.0899 35 1 2.2046 -2.4147 -5.7654 36 1 -0.4026 -3.0249 -5.3811 37 1 0.5317 -3.9054 -6.6281 38 1 -1.3146 -6.1329 -5.5709 39 1 -0.0128 -5.7610 -6.7414 40 1 0.5649 -8.0033 -6.1065 41 1 0.0396 -7.7499 -4.4084 42 1 2.5163 -6.6148 -5.8288 43 1 2.4175 -7.3873 -4.2123 44 1 2.1670 -4.0410 1.0214 45 1 2.8326 -3.7411 -0.6132 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015089495.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:18 Heat of formation + Delta-G solvation = -22.908306 kcal Electronic energy + Delta-G solvation = -25420.446718 eV Core-core repulsion = 22051.278652 eV Total energy + Delta-G solvation = -3369.168067 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.96320 -39.95325 -38.58224 -35.46033 -34.83925 -33.48344 -32.33723 -31.01196 -29.51635 -28.66520 -26.48451 -26.38670 -23.84228 -22.52573 -21.97069 -21.65345 -21.31559 -20.34799 -18.89559 -18.32735 -17.41185 -16.95988 -16.63555 -16.15307 -15.83449 -15.50432 -15.39567 -15.18773 -14.91496 -14.42578 -14.12848 -13.91012 -13.82946 -13.55838 -13.30387 -13.11611 -12.89854 -12.79623 -12.52634 -12.44251 -12.29558 -12.14073 -12.07114 -12.02268 -11.89687 -11.81714 -11.76042 -11.59009 -11.35184 -10.83321 -10.71154 -9.97823 -9.46968 -8.85479 -7.83819 -5.18274 1.45588 1.46782 1.55627 1.64081 2.30992 2.49539 2.90556 3.34836 3.45587 3.50236 3.67647 3.75255 3.80070 4.01263 4.04752 4.08736 4.10820 4.21693 4.31310 4.42435 4.53704 4.64457 4.66161 4.70612 4.75664 4.80145 4.87985 4.92286 4.96742 5.01252 5.02404 5.04809 5.07039 5.16600 5.22467 5.27316 5.44326 5.62087 5.68048 5.76501 5.78260 6.00806 6.20098 6.70065 7.12221 7.32585 7.77511 8.42753 9.26253 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019137 B = 0.005114 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.753710 B = 5473.655921 C = 6035.390419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.057 4.057 3 Si 0.973 3.027 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.617 5.617 10 C 0.188 3.812 11 C -0.134 4.134 12 C 0.137 3.863 13 H 0.098 0.902 14 N -0.686 5.686 15 C 0.535 3.465 16 O -0.589 6.589 17 C 0.072 3.928 18 C -0.122 4.122 19 C -0.135 4.135 20 C 0.039 3.961 21 N -0.521 5.521 22 C 0.036 3.964 23 C -0.126 4.126 24 C -0.122 4.122 25 C 0.125 3.875 26 H 0.247 0.753 27 H 0.018 0.982 28 H 0.009 0.991 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.408 0.592 32 H 0.106 0.894 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.102 0.898 41 H 0.058 0.942 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.031 0.969 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.864 -12.170 -14.958 19.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.250 4.250 3 Si 0.802 3.198 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.370 4.370 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.064 3.936 11 C -0.173 4.173 12 C 0.030 3.970 13 H 0.116 0.884 14 N -0.334 5.334 15 C 0.322 3.678 16 O -0.470 6.470 17 C -0.021 4.021 18 C -0.160 4.160 19 C -0.173 4.173 20 C -0.089 4.089 21 N -0.247 5.247 22 C -0.091 4.091 23 C -0.164 4.164 24 C -0.161 4.161 25 C -0.002 4.002 26 H 0.057 0.943 27 H 0.037 0.963 28 H 0.028 0.972 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.243 0.757 32 H 0.125 0.875 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.120 0.880 41 H 0.077 0.923 42 H 0.117 0.883 43 H 0.090 0.910 44 H 0.049 0.951 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.856 -12.456 -14.085 18.822 hybrid contribution 0.773 1.498 -0.161 1.693 sum -0.083 -10.958 -14.246 17.974 Atomic orbital electron populations 1.70156 1.05985 1.25216 1.58110 1.25510 0.96553 1.00460 1.02518 0.85159 0.77575 0.79550 0.77517 1.21125 1.21915 1.19993 1.19331 0.90627 0.83800 1.43255 0.90960 1.44665 1.02330 1.00425 1.86997 1.20897 0.83470 0.91120 0.98150 1.23061 0.96450 0.95889 1.01866 1.21975 0.95909 0.98762 0.80318 0.88449 1.45732 1.47752 1.33863 1.06052 1.20619 0.77557 0.79723 0.89909 1.90612 1.44910 1.38298 1.73208 1.22325 0.91113 0.98176 0.90490 1.22844 0.96792 0.94306 1.02083 1.22800 0.95768 0.97120 1.01580 1.23332 0.97602 0.90887 0.97040 1.65219 1.20751 1.04624 1.34086 1.23367 1.00540 0.89864 0.95305 1.22763 0.93975 0.97678 1.01995 1.22807 0.98845 0.93485 1.00971 1.22029 0.95170 0.85799 0.97178 0.94333 0.96342 0.97232 0.89383 0.89199 0.75664 0.87523 0.92728 0.93291 0.88509 0.89939 0.90263 0.89470 0.90725 0.87958 0.92344 0.88315 0.91026 0.95145 0.95619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.98 10.31 21.65 0.22 -55.76 16 2 C -0.06 -3.23 5.49 84.86 0.47 -2.77 16 3 Si 0.97 45.84 29.55 68.60 2.03 47.87 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.24 -13.71 10.28 84.03 0.86 -12.84 16 8 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.62 -32.06 3.39 -691.98 -2.35 -34.41 16 10 C 0.19 9.16 5.36 86.73 0.47 9.63 16 11 C -0.13 -4.90 6.55 31.78 0.21 -4.69 16 12 C 0.14 5.13 3.43 46.39 0.16 5.29 16 13 H 0.10 3.53 7.54 -2.39 -0.02 3.51 16 14 N -0.69 -24.54 5.10 -435.95 -2.22 -26.77 16 15 C 0.54 18.53 6.68 87.66 0.59 19.12 16 16 O -0.59 -23.71 15.36 -3.04 -0.05 -23.76 16 17 C 0.07 1.87 0.91 3.36 0.00 1.87 16 18 C -0.12 -2.94 6.03 31.72 0.19 -2.75 16 19 C -0.13 -3.22 7.07 31.96 0.23 -2.99 16 20 C 0.04 0.78 6.72 86.73 0.58 1.37 16 21 N -0.52 -11.97 4.73 -831.20 -3.93 -15.90 16 22 C 0.04 0.62 6.72 86.72 0.58 1.20 16 23 C -0.13 -2.22 7.07 31.96 0.23 -1.99 16 24 C -0.12 -2.63 6.01 31.72 0.19 -2.44 16 25 C 0.12 5.55 6.93 86.86 0.60 6.16 16 26 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 27 H 0.02 0.98 7.38 -2.39 -0.02 0.97 16 28 H 0.01 0.52 7.51 -2.39 -0.02 0.50 16 29 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 30 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 31 H 0.41 14.81 8.09 -92.70 -0.75 14.06 16 32 H 0.11 1.94 7.30 -2.38 -0.02 1.92 16 33 H 0.05 1.59 7.85 -2.39 -0.02 1.57 16 34 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.08 1.19 7.08 -2.39 -0.02 1.17 16 38 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.07 0.96 7.08 -2.39 -0.02 0.94 16 40 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.10 1.62 7.30 -2.39 -0.02 1.60 16 43 H 0.07 1.88 6.91 -2.39 -0.02 1.86 16 44 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -68.19 346.61 -0.72 -68.92 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.23 Total: 25.64 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 5.35 Total: 14.16 kcal Atomic # 7 Polarization: -124.55 SS G_CDS: -8.28 Total: -132.83 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.05 Total: -23.76 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -68.19 -0.72 -68.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015089495.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.008 kcal (2) G-P(sol) polarization free energy of solvation -68.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds