Wall clock time and date at job start Tue Mar 31 2020 06:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 119.99896 * 2 1 4 4 H 1.48501 * 109.47379 * 270.00223 * 3 2 1 5 5 H 1.48496 * 109.47305 * 30.01004 * 3 2 1 6 6 H 1.48507 * 109.46512 * 150.00503 * 3 2 1 7 7 C 1.38808 * 119.99626 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99918 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00177 * 359.97438 * 7 2 1 10 10 C 1.47019 * 125.64965 * 359.97438 * 9 7 2 11 11 C 1.54330 * 107.27238 * 178.99641 * 10 9 7 12 12 C 1.55149 * 102.94177 * 337.80547 * 11 10 9 13 13 H 1.09002 * 111.00349 * 277.38869 * 12 11 10 14 14 N 1.46500 * 111.00882 * 153.57874 * 12 11 10 15 15 C 1.34774 * 120.00574 * 158.17878 * 14 12 11 16 16 O 1.21280 * 119.99469 * 359.97438 * 15 14 12 17 17 C 1.50702 * 120.00014 * 180.02562 * 15 14 12 18 18 C 1.54132 * 110.74508 * 83.98269 * 17 15 14 19 19 C 1.55159 * 102.88775 * 262.57623 * 18 17 15 20 20 C 1.54842 * 101.68988 * 323.82647 * 19 18 17 21 21 N 1.47855 * 110.77363 * 325.09369 * 17 15 14 22 22 C 1.47954 * 108.37416 * 238.96951 * 21 17 15 23 23 C 1.54831 * 105.06724 * 22.80886 * 22 21 17 24 24 C 1.54133 * 110.73900 * 205.43079 * 17 15 14 25 25 C 1.47473 * 125.63035 * 179.97438 * 9 7 2 26 26 H 0.97000 * 119.99723 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.88953 * 59.57576 * 10 9 7 28 28 H 1.09002 * 109.88032 * 298.41100 * 10 9 7 29 29 H 1.09005 * 110.71620 * 219.43761 * 11 10 9 30 30 H 1.08997 * 110.71777 * 96.17024 * 11 10 9 31 31 H 0.97004 * 119.99247 * 338.18269 * 14 12 11 32 32 H 1.09005 * 110.72652 * 144.22443 * 18 17 15 33 33 H 1.08996 * 110.73203 * 20.92994 * 18 17 15 34 34 H 1.09002 * 110.99010 * 81.93862 * 19 18 17 35 35 H 1.08995 * 110.99072 * 205.71589 * 19 18 17 36 36 H 1.08999 * 110.32046 * 155.59465 * 20 19 18 37 37 H 1.09001 * 110.32127 * 277.79578 * 20 19 18 38 38 H 1.08995 * 110.31979 * 141.70952 * 22 21 17 39 39 H 1.09000 * 110.32049 * 263.81113 * 22 21 17 40 40 H 1.09008 * 110.98709 * 81.42132 * 23 22 21 41 41 H 1.09000 * 110.99145 * 205.19817 * 23 22 21 42 42 H 1.09003 * 110.73114 * 216.49680 * 24 17 15 43 43 H 1.09001 * 110.73693 * 339.79947 * 24 17 15 44 44 H 1.09001 * 110.34563 * 85.22991 * 25 9 7 45 45 H 1.09001 * 110.40254 * 322.89839 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1376 -2.5327 0.0005 11 6 -0.4486 -4.0441 -0.0257 12 6 0.8512 -4.6562 -0.6112 13 1 0.8551 -4.5972 -1.6996 14 7 1.0288 -6.0395 -0.1626 15 6 1.8107 -6.8814 -0.8670 16 8 2.3670 -6.4939 -1.8726 17 6 1.9928 -8.3045 -0.4057 18 6 0.8347 -9.1919 -0.9026 19 6 -0.1154 -9.2395 0.3232 20 6 0.8912 -9.2610 1.4996 21 7 2.0013 -8.3801 1.0709 22 6 3.2893 -8.9679 1.5004 23 6 4.2631 -8.7055 0.3256 24 6 3.3295 -8.8771 -0.9168 25 6 1.9339 -3.7314 -0.0016 26 1 -0.4850 0.8401 0.0004 27 1 -0.5584 -2.0523 -0.8827 28 1 -0.5538 -2.0842 0.9027 29 1 -1.2992 -4.2515 -0.6751 30 1 -0.6311 -4.4178 0.9818 31 1 0.5835 -6.3494 0.6415 32 1 1.1934 -10.1906 -1.1518 33 1 0.3379 -8.7346 -1.7583 34 1 -0.7448 -8.3505 0.3641 35 1 -0.7222 -10.1448 0.3119 36 1 0.4248 -8.8706 2.4041 37 1 1.2554 -10.2745 1.6677 38 1 3.6465 -8.4766 2.4053 39 1 3.1787 -10.0389 1.6703 40 1 4.6604 -7.6912 0.3670 41 1 5.0698 -9.4385 0.3160 42 1 3.2242 -9.9307 -1.1754 43 1 3.6941 -8.3040 -1.7693 44 1 2.1685 -4.0420 1.0165 45 1 2.8324 -3.7411 -0.6186 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015089496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:20 Heat of formation + Delta-G solvation = -0.824307 kcal Electronic energy + Delta-G solvation = -24811.936098 eV Core-core repulsion = 21443.725665 eV Total energy + Delta-G solvation = -3368.210433 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.98594 -38.56202 -36.99467 -34.32777 -33.68457 -31.77534 -31.49170 -29.17293 -28.47503 -26.90009 -25.70031 -24.47744 -22.47061 -21.74784 -20.95582 -20.23892 -19.96395 -19.09681 -17.46472 -16.77039 -16.34947 -15.74361 -15.09602 -14.67824 -14.55594 -14.36331 -14.13766 -13.89557 -13.68821 -13.23143 -12.85963 -12.59604 -12.32744 -12.21461 -12.10016 -11.81073 -11.74011 -11.69526 -11.32807 -11.18926 -11.06537 -10.91841 -10.82524 -10.67139 -10.59730 -10.27789 -10.05302 -9.82468 -9.69105 -9.58055 -8.68065 -8.58686 -8.50482 -6.76734 -5.65498 -2.98371 2.82477 3.45066 3.48090 3.50648 3.53141 3.69580 4.24783 4.26181 4.53311 4.57028 4.72247 4.77151 4.89452 5.00132 5.10459 5.24176 5.31387 5.37839 5.46256 5.51649 5.51781 5.59044 5.65255 5.69194 5.72967 5.76591 5.83654 5.87050 5.90333 5.95357 6.07911 6.30014 6.43449 6.49040 6.52847 6.67142 6.74939 6.80740 7.12443 7.60306 7.64226 7.84926 7.95619 8.31097 8.59289 9.28231 9.88237 10.53948 11.46555 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.026450 B = 0.003767 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.348624 B = 7431.761211 C = 7827.726773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.149 4.149 12 C 0.126 3.874 13 H 0.092 0.908 14 N -0.699 5.699 15 C 0.539 3.461 16 O -0.547 6.547 17 C 0.069 3.931 18 C -0.126 4.126 19 C -0.135 4.135 20 C 0.031 3.969 21 N -0.503 5.503 22 C 0.036 3.964 23 C -0.133 4.133 24 C -0.125 4.125 25 C 0.131 3.869 26 H 0.251 0.749 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.402 0.598 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.021 0.979 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.619 -23.366 2.603 23.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.188 4.188 12 C 0.021 3.979 13 H 0.110 0.890 14 N -0.348 5.348 15 C 0.323 3.677 16 O -0.424 6.424 17 C -0.024 4.024 18 C -0.164 4.164 19 C -0.173 4.173 20 C -0.096 4.096 21 N -0.228 5.228 22 C -0.091 4.091 23 C -0.171 4.171 24 C -0.164 4.164 25 C 0.004 3.996 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.237 0.763 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.115 0.885 44 H 0.039 0.961 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.891 -22.285 2.141 22.406 hybrid contribution 0.291 -0.049 0.143 0.328 sum 1.182 -22.334 2.284 22.482 Atomic orbital electron populations 1.69953 1.04857 1.24946 1.57482 1.24785 0.95735 0.97603 1.02401 0.86103 0.78570 0.83456 0.77567 1.21614 1.21710 1.20717 1.19083 0.90498 0.82342 1.43335 0.90440 1.44407 1.01623 0.99849 1.87241 1.21128 0.84556 0.87461 1.01348 1.23165 0.95865 1.00049 0.99689 1.22282 0.96788 0.79211 0.99636 0.88983 1.45871 1.48957 1.11288 1.28715 1.19905 0.78338 0.86218 0.83196 1.90690 1.48250 1.77263 1.26188 1.22428 0.97400 0.93656 0.88951 1.22847 0.95243 0.99427 0.98932 1.22835 0.97639 1.03019 0.93808 1.23373 0.92021 0.95415 0.98829 1.65344 1.03465 1.46005 1.08007 1.23272 0.89175 0.97729 0.98960 1.22987 0.97615 1.02881 0.93655 1.23026 0.93012 1.00886 0.99464 1.21812 0.94778 0.85977 0.97045 0.93820 0.93340 0.93655 0.91764 0.92069 0.76333 0.90255 0.90204 0.90267 0.90317 0.89563 0.92847 0.89746 0.92966 0.90400 0.90591 0.90827 0.88533 0.96147 0.94081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.63 10.31 55.49 0.57 -27.06 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.22 -6.51 10.28 -15.06 -0.15 -6.67 16 8 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 9 N -0.60 -16.16 3.40 -170.05 -0.58 -16.74 16 10 C 0.18 4.46 5.37 -3.06 -0.02 4.44 16 11 C -0.15 -2.79 6.59 -24.90 -0.16 -2.95 16 12 C 0.13 2.42 3.37 -65.80 -0.22 2.20 16 13 H 0.09 1.94 7.63 -51.93 -0.40 1.54 16 14 N -0.70 -10.99 5.13 -51.74 -0.27 -11.25 16 15 C 0.54 8.57 6.67 -10.99 -0.07 8.50 16 16 O -0.55 -10.79 15.34 5.56 0.09 -10.70 16 17 C 0.07 0.80 0.90 -131.04 -0.12 0.68 16 18 C -0.13 -1.18 6.02 -25.00 -0.15 -1.33 16 19 C -0.13 -1.05 7.07 -24.62 -0.17 -1.22 16 20 C 0.03 0.25 6.73 -2.22 -0.01 0.23 16 21 N -0.50 -5.26 4.73 -214.00 -1.01 -6.27 16 22 C 0.04 0.33 6.74 -2.28 -0.02 0.32 16 23 C -0.13 -1.31 7.09 -23.96 -0.17 -1.48 16 24 C -0.13 -1.36 6.10 -24.34 -0.15 -1.51 16 25 C 0.13 2.99 6.93 -2.51 -0.02 2.97 16 26 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 28 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.04 8.00 -51.93 -0.42 0.62 16 31 H 0.40 5.53 7.96 -40.82 -0.32 5.20 16 32 H 0.08 0.62 7.31 -51.93 -0.38 0.24 16 33 H 0.08 0.83 7.85 -51.93 -0.41 0.42 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.37 7.08 -51.93 -0.37 0.00 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.39 7.08 -51.93 -0.37 0.02 16 40 H 0.08 0.92 8.14 -51.92 -0.42 0.49 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.65 7.31 -51.93 -0.38 0.27 16 43 H 0.10 1.27 6.84 -51.93 -0.36 0.91 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 346.49 15.07 5.22 5.22 Total: -1.00 -32.78 346.49 -10.05 -42.84 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -7.52 Total: 2.48 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -1.53 Total: 3.81 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -1.28 Total: -61.32 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.78 -10.05 -42.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015089496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.012 kcal (2) G-P(sol) polarization free energy of solvation -32.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds