Wall clock time and date at job start Tue Mar 31 2020 06:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 119.99896 * 2 1 4 4 H 1.48501 * 109.47379 * 270.00223 * 3 2 1 5 5 H 1.48496 * 109.47305 * 30.01004 * 3 2 1 6 6 H 1.48507 * 109.46512 * 150.00503 * 3 2 1 7 7 C 1.38808 * 119.99626 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99918 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00177 * 359.97438 * 7 2 1 10 10 C 1.47019 * 125.64965 * 359.97438 * 9 7 2 11 11 C 1.54330 * 107.27238 * 178.99641 * 10 9 7 12 12 C 1.55149 * 102.94177 * 337.80547 * 11 10 9 13 13 H 1.09002 * 111.00349 * 277.38869 * 12 11 10 14 14 N 1.46500 * 111.00882 * 153.57874 * 12 11 10 15 15 C 1.34774 * 120.00574 * 158.17878 * 14 12 11 16 16 O 1.21280 * 119.99469 * 359.97438 * 15 14 12 17 17 C 1.50702 * 120.00014 * 180.02562 * 15 14 12 18 18 C 1.54132 * 110.74508 * 83.98269 * 17 15 14 19 19 C 1.55159 * 102.88775 * 262.57623 * 18 17 15 20 20 C 1.54842 * 101.68988 * 323.82647 * 19 18 17 21 21 N 1.47855 * 110.77363 * 325.09369 * 17 15 14 22 22 C 1.47954 * 108.37416 * 238.96951 * 21 17 15 23 23 C 1.54831 * 105.06724 * 22.80886 * 22 21 17 24 24 C 1.54133 * 110.73900 * 205.43079 * 17 15 14 25 25 C 1.47473 * 125.63035 * 179.97438 * 9 7 2 26 26 H 0.97000 * 119.99723 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.88953 * 59.57576 * 10 9 7 28 28 H 1.09002 * 109.88032 * 298.41100 * 10 9 7 29 29 H 1.09005 * 110.71620 * 219.43761 * 11 10 9 30 30 H 1.08997 * 110.71777 * 96.17024 * 11 10 9 31 31 H 0.97004 * 119.99247 * 338.18269 * 14 12 11 32 32 H 1.09005 * 110.72652 * 144.22443 * 18 17 15 33 33 H 1.08996 * 110.73203 * 20.92994 * 18 17 15 34 34 H 1.09002 * 110.99010 * 81.93862 * 19 18 17 35 35 H 1.08995 * 110.99072 * 205.71589 * 19 18 17 36 36 H 1.08999 * 110.32046 * 155.59465 * 20 19 18 37 37 H 1.09001 * 110.32127 * 277.79578 * 20 19 18 38 38 H 1.08995 * 110.31979 * 141.70952 * 22 21 17 39 39 H 1.09000 * 110.32049 * 263.81113 * 22 21 17 40 40 H 1.09008 * 110.98709 * 81.42132 * 23 22 21 41 41 H 1.09000 * 110.99145 * 205.19817 * 23 22 21 42 42 H 1.09003 * 110.73114 * 216.49680 * 24 17 15 43 43 H 1.09001 * 110.73693 * 339.79947 * 24 17 15 44 44 H 1.09001 * 110.34563 * 85.22991 * 25 9 7 45 45 H 1.09001 * 110.40254 * 322.89839 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1376 -2.5327 0.0005 11 6 -0.4486 -4.0441 -0.0257 12 6 0.8512 -4.6562 -0.6112 13 1 0.8551 -4.5972 -1.6996 14 7 1.0288 -6.0395 -0.1626 15 6 1.8107 -6.8814 -0.8670 16 8 2.3670 -6.4939 -1.8726 17 6 1.9928 -8.3045 -0.4057 18 6 0.8347 -9.1919 -0.9026 19 6 -0.1154 -9.2395 0.3232 20 6 0.8912 -9.2610 1.4996 21 7 2.0013 -8.3801 1.0709 22 6 3.2893 -8.9679 1.5004 23 6 4.2631 -8.7055 0.3256 24 6 3.3295 -8.8771 -0.9168 25 6 1.9339 -3.7314 -0.0016 26 1 -0.4850 0.8401 0.0004 27 1 -0.5584 -2.0523 -0.8827 28 1 -0.5538 -2.0842 0.9027 29 1 -1.2992 -4.2515 -0.6751 30 1 -0.6311 -4.4178 0.9818 31 1 0.5835 -6.3494 0.6415 32 1 1.1934 -10.1906 -1.1518 33 1 0.3379 -8.7346 -1.7583 34 1 -0.7448 -8.3505 0.3641 35 1 -0.7222 -10.1448 0.3119 36 1 0.4248 -8.8706 2.4041 37 1 1.2554 -10.2745 1.6677 38 1 3.6465 -8.4766 2.4053 39 1 3.1787 -10.0389 1.6703 40 1 4.6604 -7.6912 0.3670 41 1 5.0698 -9.4385 0.3160 42 1 3.2242 -9.9307 -1.1754 43 1 3.6941 -8.3040 -1.7693 44 1 2.1685 -4.0420 1.0165 45 1 2.8324 -3.7411 -0.6186 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015089496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:20 Heat of formation + Delta-G solvation = -24.058270 kcal Electronic energy + Delta-G solvation = -24812.943598 eV Core-core repulsion = 21443.725665 eV Total energy + Delta-G solvation = -3369.217933 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.95136 -39.90421 -38.64429 -35.67164 -34.78864 -33.64852 -32.33420 -31.04117 -29.51334 -28.54495 -26.50791 -26.37363 -23.70045 -22.51049 -22.08629 -21.64772 -21.64286 -20.30209 -18.97925 -18.30244 -17.50581 -16.87674 -16.67164 -16.15675 -15.98957 -15.62854 -15.27806 -15.15552 -14.67595 -14.39463 -14.17695 -14.06929 -13.86897 -13.73176 -13.29921 -13.12670 -12.95320 -12.77315 -12.50626 -12.44817 -12.36984 -12.15177 -12.04867 -12.03826 -11.91145 -11.82564 -11.77141 -11.59605 -11.32285 -10.86730 -10.73404 -10.03537 -9.46563 -8.93706 -7.87620 -5.24044 1.44405 1.47188 1.55706 1.60369 2.19402 2.49839 2.90646 3.30726 3.44125 3.50702 3.67219 3.75822 3.78685 4.02293 4.05483 4.07878 4.10946 4.18449 4.23938 4.44360 4.55992 4.57596 4.65921 4.71606 4.73376 4.84303 4.87451 4.91092 4.95512 4.98749 5.07590 5.08559 5.11053 5.17208 5.23607 5.27468 5.40008 5.57039 5.63044 5.71285 5.77258 6.01991 6.16778 6.66666 7.07772 7.32471 7.72596 8.36846 9.22587 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.026450 B = 0.003767 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.348624 B = 7431.761211 C = 7827.726773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.061 4.061 3 Si 0.981 3.019 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.271 1.271 7 C -0.250 4.250 8 H 0.075 0.925 9 N -0.625 5.625 10 C 0.185 3.815 11 C -0.126 4.126 12 C 0.144 3.856 13 H 0.071 0.929 14 N -0.688 5.688 15 C 0.533 3.467 16 O -0.592 6.592 17 C 0.073 3.927 18 C -0.123 4.123 19 C -0.130 4.130 20 C 0.032 3.968 21 N -0.522 5.522 22 C 0.039 3.961 23 C -0.133 4.133 24 C -0.126 4.126 25 C 0.133 3.867 26 H 0.249 0.751 27 H 0.015 0.985 28 H 0.018 0.982 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.415 0.585 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.047 0.953 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.065 0.935 44 H 0.026 0.974 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.299 -25.984 3.811 26.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.254 4.254 3 Si 0.809 3.191 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.196 1.196 7 C -0.379 4.379 8 H 0.093 0.907 9 N -0.352 5.352 10 C 0.060 3.940 11 C -0.165 4.165 12 C 0.037 3.963 13 H 0.089 0.911 14 N -0.338 5.338 15 C 0.320 3.680 16 O -0.472 6.472 17 C -0.020 4.020 18 C -0.162 4.162 19 C -0.168 4.168 20 C -0.095 4.095 21 N -0.247 5.247 22 C -0.088 4.088 23 C -0.171 4.171 24 C -0.165 4.165 25 C 0.006 3.994 26 H 0.059 0.941 27 H 0.033 0.967 28 H 0.036 0.964 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.253 0.747 32 H 0.120 0.880 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.084 0.916 44 H 0.044 0.956 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 0.567 -24.952 3.380 25.187 hybrid contribution 0.439 0.760 -0.240 0.910 sum 1.006 -24.192 3.141 24.416 Atomic orbital electron populations 1.70161 1.06152 1.25485 1.57862 1.25643 0.96727 1.00883 1.02126 0.85051 0.77644 0.78914 0.77534 1.21264 1.21404 1.19579 1.19424 0.90865 0.83819 1.43796 0.90679 1.44689 1.02710 1.00631 1.87179 1.20936 0.83364 0.91268 0.98400 1.22978 0.96219 0.95359 1.01922 1.21793 0.95583 0.80678 0.98203 0.91053 1.45689 1.49213 1.09637 1.29234 1.20838 0.76925 0.87957 0.82311 1.90670 1.49742 1.78523 1.28221 1.22314 0.98886 0.90625 0.90199 1.22876 0.94550 0.99670 0.99102 1.22846 0.97374 1.03881 0.92654 1.23454 0.91104 0.95989 0.98906 1.65246 1.04927 1.47745 1.06822 1.23304 0.88132 0.99211 0.98165 1.22984 0.98426 1.01873 0.93781 1.23045 0.92781 1.01922 0.98728 1.21868 0.95086 0.85409 0.97042 0.94143 0.96694 0.96383 0.89107 0.89344 0.74750 0.88017 0.91663 0.91092 0.87906 0.88934 0.90874 0.89923 0.90309 0.93398 0.88261 0.87957 0.91581 0.95606 0.96193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.16 10.31 21.65 0.22 -57.94 16 2 C -0.06 -3.57 5.49 84.86 0.47 -3.11 16 3 Si 0.98 47.38 29.55 68.60 2.03 49.41 16 4 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.25 -14.97 10.28 84.03 0.86 -14.11 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 9 N -0.63 -34.52 3.40 -691.91 -2.35 -36.87 16 10 C 0.19 9.42 5.37 86.73 0.47 9.89 16 11 C -0.13 -4.62 6.59 31.78 0.21 -4.41 16 12 C 0.14 5.57 3.37 46.37 0.16 5.73 16 13 H 0.07 3.10 7.63 -2.39 -0.02 3.08 16 14 N -0.69 -21.15 5.13 -436.01 -2.24 -23.38 16 15 C 0.53 16.93 6.67 87.66 0.58 17.51 16 16 O -0.59 -24.20 15.34 -3.03 -0.05 -24.24 16 17 C 0.07 1.58 0.90 3.36 0.00 1.58 16 18 C -0.12 -1.97 6.02 31.72 0.19 -1.78 16 19 C -0.13 -1.54 7.07 31.96 0.23 -1.31 16 20 C 0.03 0.39 6.73 86.71 0.58 0.97 16 21 N -0.52 -9.55 4.73 -830.96 -3.93 -13.48 16 22 C 0.04 0.60 6.74 86.73 0.58 1.19 16 23 C -0.13 -2.42 7.09 32.39 0.23 -2.19 16 24 C -0.13 -2.58 6.10 32.15 0.20 -2.38 16 25 C 0.13 6.21 6.93 86.84 0.60 6.81 16 26 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 27 H 0.01 0.84 7.38 -2.39 -0.02 0.82 16 28 H 0.02 1.00 7.51 -2.39 -0.02 0.98 16 29 H 0.09 2.89 8.14 -2.38 -0.02 2.87 16 30 H 0.09 2.79 8.00 -2.39 -0.02 2.77 16 31 H 0.41 10.64 7.96 -92.71 -0.74 9.90 16 32 H 0.10 1.19 7.31 -2.38 -0.02 1.17 16 33 H 0.06 1.25 7.85 -2.39 -0.02 1.23 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.10 0.76 8.14 -2.39 -0.02 0.75 16 36 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 0.62 7.08 -2.39 -0.02 0.61 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 39 H 0.08 0.82 7.08 -2.39 -0.02 0.81 16 40 H 0.05 1.14 8.14 -2.38 -0.02 1.13 16 41 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.10 1.48 7.31 -2.39 -0.02 1.47 16 43 H 0.07 1.77 6.84 -2.39 -0.02 1.76 16 44 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -74.71 346.49 -0.71 -75.42 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.24 Total: 16.69 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 5.36 Total: 14.40 kcal Atomic # 7 Polarization: -123.38 SS G_CDS: -8.29 Total: -131.67 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.05 Total: -24.24 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -74.71 -0.71 -75.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015089496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.362 kcal (2) G-P(sol) polarization free energy of solvation -74.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds