Wall clock time and date at job start Tue Mar 31 2020 07:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00355 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00448 * 3 2 1 7 7 C 1.38811 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99665 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99567 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.88908 * 325.70623 * 10 9 7 12 12 C 1.55154 * 111.00398 * 89.58710 * 10 9 7 13 13 C 1.54320 * 102.94809 * 153.57402 * 12 10 9 14 14 N 1.47029 * 107.26827 * 337.80719 * 13 12 10 15 15 C 1.34775 * 125.64793 * 178.89739 * 14 13 12 16 16 O 1.21278 * 119.99869 * 180.02562 * 15 14 13 17 17 C 1.50704 * 119.99852 * 0.02795 * 15 14 13 18 18 H 1.09002 * 109.57391 * 60.26060 * 17 15 14 19 19 C 1.53137 * 109.57457 * 299.99505 * 17 15 14 20 20 N 1.46909 * 109.36758 * 240.18744 * 19 17 15 21 21 C 1.46941 * 111.05437 * 62.00998 * 20 19 17 22 22 C 1.53121 * 109.35353 * 298.04187 * 21 20 19 23 23 C 1.53384 * 109.57174 * 180.65461 * 17 15 14 24 24 C 1.53397 * 108.59308 * 178.77257 * 23 17 15 25 25 C 1.46948 * 111.05926 * 298.01062 * 20 19 17 26 26 C 1.47470 * 108.71936 * 358.97194 * 14 13 12 27 27 H 0.97005 * 119.99717 * 180.02562 * 1 2 3 28 28 H 0.97000 * 120.00607 * 0.02562 * 9 7 2 29 29 H 1.09001 * 110.71759 * 271.93741 * 12 10 9 30 30 H 1.09000 * 110.71978 * 35.20766 * 12 10 9 31 31 H 1.09000 * 109.88065 * 97.21976 * 13 12 10 32 32 H 1.08990 * 109.88381 * 218.23592 * 13 12 10 33 33 H 1.08992 * 109.49251 * 0.15945 * 19 17 15 34 34 H 1.08999 * 109.48571 * 120.22668 * 19 17 15 35 35 H 1.08999 * 109.49107 * 58.00577 * 21 20 19 36 36 H 1.09005 * 109.48873 * 178.07592 * 21 20 19 37 37 H 1.08996 * 109.57602 * 240.12836 * 22 21 20 38 38 H 1.08997 * 109.68546 * 119.80362 * 22 21 20 39 39 H 1.08999 * 110.11542 * 299.40628 * 23 17 15 40 40 H 1.08998 * 109.57520 * 181.19548 * 24 23 17 41 41 H 1.08994 * 109.68106 * 60.86981 * 24 23 17 42 42 H 1.08998 * 109.49278 * 181.92608 * 25 20 19 43 43 H 1.08995 * 109.48946 * 301.97755 * 25 20 19 44 44 H 1.08992 * 110.35198 * 265.25144 * 26 14 13 45 45 H 1.09007 * 110.39949 * 142.91560 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1038 1.6966 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 1 2.9807 -3.5723 -0.5761 12 6 2.3465 -4.1337 1.4463 13 6 2.4565 -5.6651 1.2904 14 7 1.7402 -6.0311 0.0597 15 6 1.6229 -7.2774 -0.4398 16 8 1.0064 -7.4632 -1.4675 17 6 2.2577 -8.4400 0.2789 18 1 1.8382 -8.5226 1.2815 19 6 3.7705 -8.2215 0.3718 20 7 4.4644 -9.3198 -0.3141 21 6 4.1194 -9.3520 -1.7421 22 6 2.6166 -9.6017 -1.8955 23 6 1.9913 -9.7336 -0.5010 24 6 2.6722 -10.8960 0.2325 25 6 4.1736 -10.6099 0.3265 26 6 1.1728 -4.8086 -0.5390 27 1 -0.4850 -0.8401 0.0004 28 1 0.3556 -2.3881 -0.0005 29 1 3.2845 -3.7149 1.8107 30 1 1.5224 -3.8718 2.1099 31 1 3.5041 -5.9552 1.2098 32 1 2.0002 -6.1588 2.1483 33 1 4.0311 -7.2749 -0.1014 34 1 4.0710 -8.1996 1.4194 35 1 4.3782 -8.3975 -2.2004 36 1 4.6732 -10.1530 -2.2320 37 1 2.4547 -10.5220 -2.4568 38 1 2.1576 -8.7662 -2.4239 39 1 0.9187 -9.9133 -0.5739 40 1 2.5106 -11.8214 -0.3203 41 1 2.2553 -10.9919 1.2351 42 1 4.7269 -11.4006 -0.1804 43 1 4.4720 -10.5712 1.3741 44 1 0.1397 -4.6741 -0.2188 45 1 1.2307 -4.8560 -1.6265 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018856995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:23 Heat of formation + Delta-G solvation = -10.111465 kcal Electronic energy + Delta-G solvation = -24706.050841 eV Core-core repulsion = 21337.437687 eV Total energy + Delta-G solvation = -3368.613154 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.46734 -39.24182 -37.29974 -34.51972 -32.44547 -32.22403 -31.15043 -30.93820 -29.53498 -27.56280 -24.57202 -23.47547 -23.15316 -23.09907 -22.51182 -20.32189 -19.35969 -17.77089 -17.53405 -17.30603 -16.70279 -16.42941 -15.82462 -15.65762 -14.92934 -14.43621 -13.96795 -13.69665 -13.43751 -13.22071 -13.04500 -12.83513 -12.72596 -12.46574 -12.39143 -12.34277 -12.22302 -11.94046 -11.70139 -11.69380 -11.17111 -11.08465 -10.75102 -10.69122 -10.53852 -10.43033 -10.28766 -10.02584 -9.53271 -9.25929 -9.00067 -8.57761 -8.38952 -7.15888 -6.18191 -3.20367 2.66498 3.02842 3.48500 3.51599 3.69272 3.72756 4.24983 4.31482 4.58798 4.60875 4.78273 4.81262 4.91343 4.93323 4.94140 5.04423 5.08346 5.19568 5.22329 5.30376 5.36870 5.44082 5.53374 5.54632 5.60628 5.64870 5.70139 5.74826 5.85714 5.88790 5.93508 5.96737 5.98642 6.11588 6.23198 6.27492 6.45224 6.50646 6.78055 6.80538 6.82616 7.64423 7.72402 8.23333 8.66933 9.11004 9.97638 10.10943 11.29651 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.035261 B = 0.003263 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.886967 B = 8580.010883 C = 8760.125524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.041 4.041 3 Si 1.081 2.919 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.337 4.337 8 H 0.067 0.933 9 N -0.726 5.726 10 C 0.178 3.822 11 H 0.066 0.934 12 C -0.155 4.155 13 C 0.098 3.902 14 N -0.611 5.611 15 C 0.532 3.468 16 O -0.541 6.541 17 C -0.134 4.134 18 H 0.096 0.904 19 C 0.062 3.938 20 N -0.527 5.527 21 C 0.051 3.949 22 C -0.160 4.160 23 C -0.065 4.065 24 C -0.151 4.151 25 C 0.051 3.949 26 C 0.098 3.902 27 H 0.256 0.744 28 H 0.369 0.631 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.055 -21.994 2.742 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.239 4.239 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.221 1.221 7 C -0.467 4.467 8 H 0.085 0.915 9 N -0.367 5.367 10 C 0.066 3.934 11 H 0.084 0.916 12 C -0.196 4.196 13 C -0.026 4.026 14 N -0.345 5.345 15 C 0.321 3.679 16 O -0.419 6.419 17 C -0.157 4.157 18 H 0.115 0.885 19 C -0.067 4.067 20 N -0.247 5.247 21 C -0.077 4.077 22 C -0.199 4.199 23 C -0.085 4.085 24 C -0.190 4.190 25 C -0.077 4.077 26 C -0.025 4.025 27 H 0.067 0.933 28 H 0.203 0.797 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.330 -20.359 2.188 22.106 hybrid contribution -1.095 -1.872 0.173 2.176 sum 7.235 -22.231 2.361 23.498 Atomic orbital electron populations 1.70895 1.06086 1.28527 1.52968 1.25825 0.97008 1.01098 0.99999 0.83235 0.74238 0.75483 0.75930 1.20992 1.22156 1.22146 1.20018 0.92071 0.85446 1.49205 0.91515 1.42268 1.04845 1.00355 1.89268 1.21225 0.94423 0.85145 0.92651 0.91620 1.23399 1.02906 0.91419 1.01852 1.22211 0.96345 0.97730 0.86291 1.48459 1.53653 1.06486 1.25922 1.20146 0.80235 0.82595 0.84947 1.90626 1.42746 1.84075 1.24464 1.22049 0.98956 0.94071 1.00673 0.88546 1.22315 0.88750 0.95395 1.00276 1.62545 1.55653 1.03592 1.02943 1.22231 0.94454 1.02511 0.88517 1.22460 0.96734 1.03796 0.96903 1.20893 1.00509 0.92211 0.94872 1.22307 0.97361 0.98430 1.00870 1.22226 0.94105 0.91415 0.99971 1.22560 0.97767 0.83456 0.98765 0.93312 0.79709 0.90553 0.90778 0.91402 0.92063 0.89795 0.89702 0.90753 0.90712 0.92012 0.88683 0.89927 0.91305 0.91597 0.90583 0.90583 0.91679 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.58 13.70 55.49 0.76 -27.82 16 2 C -0.04 -1.17 5.50 -17.43 -0.10 -1.27 16 3 Si 1.08 25.33 29.92 -169.99 -5.09 20.24 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.34 -9.16 9.97 -15.06 -0.15 -9.31 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.73 -17.55 5.26 -51.35 -0.27 -17.82 16 10 C 0.18 3.40 3.70 -65.78 -0.24 3.16 16 11 H 0.07 1.30 8.11 -51.93 -0.42 0.88 16 12 C -0.15 -2.47 6.65 -24.90 -0.17 -2.63 16 13 C 0.10 1.24 6.01 -3.06 -0.02 1.22 16 14 N -0.61 -9.13 3.24 -170.48 -0.55 -9.68 16 15 C 0.53 7.90 6.66 -10.98 -0.07 7.83 16 16 O -0.54 -9.77 14.01 5.56 0.08 -9.69 16 17 C -0.13 -1.49 2.13 -91.50 -0.20 -1.69 16 18 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 19 C 0.06 0.62 4.19 -3.75 -0.02 0.61 16 20 N -0.53 -5.26 5.22 -234.30 -1.22 -6.48 16 21 C 0.05 0.53 6.09 -3.74 -0.02 0.51 16 22 C -0.16 -1.81 5.43 -26.47 -0.14 -1.95 16 23 C -0.07 -0.70 2.59 -90.01 -0.23 -0.93 16 24 C -0.15 -1.23 5.75 -26.46 -0.15 -1.38 16 25 C 0.05 0.41 6.09 -3.73 -0.02 0.39 16 26 C 0.10 1.72 6.54 -2.50 -0.02 1.70 16 27 H 0.26 7.64 6.77 -40.82 -0.28 7.37 16 28 H 0.37 9.26 6.56 -40.82 -0.27 8.99 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.07 0.74 6.02 -51.93 -0.31 0.43 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.97 6.36 -51.93 -0.33 0.64 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.09 1.36 5.59 -51.93 -0.29 1.07 16 39 H 0.08 0.98 8.12 -51.93 -0.42 0.55 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 1.19 8.00 -51.93 -0.42 0.77 16 45 H 0.08 1.41 8.04 -51.92 -0.42 0.99 16 LS Contribution 339.07 15.07 5.11 5.11 Total: -1.00 -31.45 339.07 -10.16 -41.61 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -7.43 Total: 8.27 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -1.55 Total: -3.74 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: -1.28 Total: -61.80 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.08 Total: -9.69 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.09 Total: 20.24 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.45 -10.16 -41.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018856995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.498 kcal (2) G-P(sol) polarization free energy of solvation -31.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds