Wall clock time and date at job start Tue Mar 31 2020 07:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00355 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00448 * 3 2 1 7 7 C 1.38811 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99665 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99567 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.88908 * 325.70623 * 10 9 7 12 12 C 1.55154 * 111.00398 * 89.58710 * 10 9 7 13 13 C 1.54320 * 102.94809 * 153.57402 * 12 10 9 14 14 N 1.47029 * 107.26827 * 337.80719 * 13 12 10 15 15 C 1.34775 * 125.64793 * 178.89739 * 14 13 12 16 16 O 1.21278 * 119.99869 * 180.02562 * 15 14 13 17 17 C 1.50704 * 119.99852 * 0.02795 * 15 14 13 18 18 H 1.09002 * 109.57391 * 60.26060 * 17 15 14 19 19 C 1.53137 * 109.57457 * 299.99505 * 17 15 14 20 20 N 1.46909 * 109.36758 * 240.18744 * 19 17 15 21 21 C 1.46941 * 111.05437 * 62.00998 * 20 19 17 22 22 C 1.53121 * 109.35353 * 298.04187 * 21 20 19 23 23 C 1.53384 * 109.57174 * 180.65461 * 17 15 14 24 24 C 1.53397 * 108.59308 * 178.77257 * 23 17 15 25 25 C 1.46948 * 111.05926 * 298.01062 * 20 19 17 26 26 C 1.47470 * 108.71936 * 358.97194 * 14 13 12 27 27 H 0.97005 * 119.99717 * 180.02562 * 1 2 3 28 28 H 0.97000 * 120.00607 * 0.02562 * 9 7 2 29 29 H 1.09001 * 110.71759 * 271.93741 * 12 10 9 30 30 H 1.09000 * 110.71978 * 35.20766 * 12 10 9 31 31 H 1.09000 * 109.88065 * 97.21976 * 13 12 10 32 32 H 1.08990 * 109.88381 * 218.23592 * 13 12 10 33 33 H 1.08992 * 109.49251 * 0.15945 * 19 17 15 34 34 H 1.08999 * 109.48571 * 120.22668 * 19 17 15 35 35 H 1.08999 * 109.49107 * 58.00577 * 21 20 19 36 36 H 1.09005 * 109.48873 * 178.07592 * 21 20 19 37 37 H 1.08996 * 109.57602 * 240.12836 * 22 21 20 38 38 H 1.08997 * 109.68546 * 119.80362 * 22 21 20 39 39 H 1.08999 * 110.11542 * 299.40628 * 23 17 15 40 40 H 1.08998 * 109.57520 * 181.19548 * 24 23 17 41 41 H 1.08994 * 109.68106 * 60.86981 * 24 23 17 42 42 H 1.08998 * 109.49278 * 181.92608 * 25 20 19 43 43 H 1.08995 * 109.48946 * 301.97755 * 25 20 19 44 44 H 1.08992 * 110.35198 * 265.25144 * 26 14 13 45 45 H 1.09007 * 110.39949 * 142.91560 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1038 1.6966 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 1 2.9807 -3.5723 -0.5761 12 6 2.3465 -4.1337 1.4463 13 6 2.4565 -5.6651 1.2904 14 7 1.7402 -6.0311 0.0597 15 6 1.6229 -7.2774 -0.4398 16 8 1.0064 -7.4632 -1.4675 17 6 2.2577 -8.4400 0.2789 18 1 1.8382 -8.5226 1.2815 19 6 3.7705 -8.2215 0.3718 20 7 4.4644 -9.3198 -0.3141 21 6 4.1194 -9.3520 -1.7421 22 6 2.6166 -9.6017 -1.8955 23 6 1.9913 -9.7336 -0.5010 24 6 2.6722 -10.8960 0.2325 25 6 4.1736 -10.6099 0.3265 26 6 1.1728 -4.8086 -0.5390 27 1 -0.4850 -0.8401 0.0004 28 1 0.3556 -2.3881 -0.0005 29 1 3.2845 -3.7149 1.8107 30 1 1.5224 -3.8718 2.1099 31 1 3.5041 -5.9552 1.2098 32 1 2.0002 -6.1588 2.1483 33 1 4.0311 -7.2749 -0.1014 34 1 4.0710 -8.1996 1.4194 35 1 4.3782 -8.3975 -2.2004 36 1 4.6732 -10.1530 -2.2320 37 1 2.4547 -10.5220 -2.4568 38 1 2.1576 -8.7662 -2.4239 39 1 0.9187 -9.9133 -0.5739 40 1 2.5106 -11.8214 -0.3203 41 1 2.2553 -10.9919 1.2351 42 1 4.7269 -11.4006 -0.1804 43 1 4.4720 -10.5712 1.3741 44 1 0.1397 -4.6741 -0.2188 45 1 1.2307 -4.8560 -1.6265 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018856995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:23 Heat of formation + Delta-G solvation = -32.060935 kcal Electronic energy + Delta-G solvation = -24707.002642 eV Core-core repulsion = 21337.437687 eV Total energy + Delta-G solvation = -3369.564954 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.38963 -40.40022 -38.65639 -36.32553 -33.71171 -33.20123 -32.24030 -31.86194 -30.96193 -29.10626 -25.90898 -25.11431 -24.06788 -23.84305 -23.62406 -21.84041 -20.52190 -19.52276 -18.65977 -18.31481 -17.64351 -17.31080 -16.98339 -16.86200 -16.64609 -15.69700 -15.51728 -15.13291 -14.72501 -14.40963 -14.08351 -13.89771 -13.80601 -13.63817 -13.29444 -13.17591 -13.12645 -13.05496 -12.93777 -12.77485 -12.53362 -12.47176 -12.41058 -12.02245 -11.88458 -11.74455 -11.39190 -11.31004 -11.12029 -10.95388 -10.63372 -9.76643 -9.23623 -9.18201 -8.41164 -5.37411 1.50500 1.59772 1.69570 1.82284 1.85963 2.71370 2.98598 3.26991 3.38347 3.51361 3.56347 3.70154 3.81833 3.88044 4.00175 4.03906 4.10639 4.18993 4.21462 4.26372 4.32520 4.35352 4.38599 4.45220 4.56332 4.61024 4.72083 4.79799 4.87600 4.94926 4.99452 5.04466 5.07737 5.14666 5.15386 5.17291 5.21286 5.31641 5.38692 5.58629 6.03679 6.12720 6.45333 6.47321 7.02484 7.05492 7.92544 8.04440 9.10253 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.035261 B = 0.003263 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.886967 B = 8580.010883 C = 8760.125524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.103 4.103 3 Si 1.128 2.872 4 H -0.296 1.296 5 H -0.273 1.273 6 H -0.279 1.279 7 C -0.331 4.331 8 H 0.072 0.928 9 N -0.741 5.741 10 C 0.170 3.830 11 H 0.059 0.941 12 C -0.143 4.143 13 C 0.105 3.895 14 N -0.612 5.612 15 C 0.526 3.474 16 O -0.581 6.581 17 C -0.125 4.125 18 H 0.120 0.880 19 C 0.064 3.936 20 N -0.532 5.532 21 C 0.054 3.946 22 C -0.158 4.158 23 C -0.069 4.069 24 C -0.141 4.141 25 C 0.051 3.949 26 C 0.108 3.892 27 H 0.244 0.756 28 H 0.360 0.640 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.113 0.887 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.054 0.946 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.397 -24.013 4.727 26.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.294 4.294 3 Si 0.953 3.047 4 H -0.222 1.222 5 H -0.199 1.199 6 H -0.205 1.205 7 C -0.462 4.462 8 H 0.090 0.910 9 N -0.383 5.383 10 C 0.061 3.939 11 H 0.077 0.923 12 C -0.184 4.184 13 C -0.017 4.017 14 N -0.345 5.345 15 C 0.317 3.683 16 O -0.461 6.461 17 C -0.147 4.147 18 H 0.138 0.862 19 C -0.065 4.065 20 N -0.251 5.251 21 C -0.074 4.074 22 C -0.197 4.197 23 C -0.089 4.089 24 C -0.180 4.180 25 C -0.077 4.077 26 C -0.016 4.016 27 H 0.054 0.946 28 H 0.193 0.807 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.132 0.868 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.112 0.888 44 H 0.072 0.928 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.726 -22.448 4.199 25.230 hybrid contribution -1.820 -1.339 -0.522 2.319 sum 8.906 -23.786 3.677 25.664 Atomic orbital electron populations 1.71003 1.07320 1.27907 1.56088 1.27233 0.97041 1.04762 1.00346 0.82625 0.73365 0.71458 0.77277 1.22194 1.19893 1.20491 1.20365 0.92491 0.86514 1.46859 0.90968 1.42430 1.04624 1.01453 1.89754 1.21373 0.93749 0.83758 0.95068 0.92329 1.23188 1.02794 0.93915 0.98516 1.22319 0.98036 0.95223 0.86105 1.48524 1.53722 1.05733 1.26517 1.20991 0.79569 0.83168 0.84592 1.90622 1.44484 1.84633 1.26366 1.22111 0.99581 0.92005 1.01039 0.86215 1.22360 0.87597 0.94883 1.01703 1.62568 1.55478 1.04620 1.02475 1.22175 0.93694 1.02151 0.89380 1.22386 0.97398 1.02615 0.97351 1.20917 0.99854 0.93343 0.94780 1.22259 0.97218 0.97217 1.01320 1.22354 0.93924 0.90494 1.00954 1.22200 0.97128 0.84624 0.97697 0.94598 0.80748 0.89630 0.91995 0.88637 0.89024 0.91470 0.86839 0.92520 0.89157 0.91193 0.92374 0.91600 0.90567 0.90062 0.89598 0.88785 0.92765 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.87 13.70 21.65 0.30 -60.57 16 2 C -0.10 -5.88 5.50 84.86 0.47 -5.41 16 3 Si 1.13 51.04 29.92 68.60 2.05 53.09 16 4 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.33 -18.15 9.97 84.03 0.84 -17.31 16 8 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 9 N -0.74 -36.71 5.26 -316.38 -1.66 -38.37 16 10 C 0.17 6.59 3.70 46.38 0.17 6.76 16 11 H 0.06 2.34 8.11 -2.39 -0.02 2.32 16 12 C -0.14 -4.36 6.65 31.78 0.21 -4.15 16 13 C 0.11 2.36 6.01 86.73 0.52 2.88 16 14 N -0.61 -17.77 3.24 -811.68 -2.63 -20.40 16 15 C 0.53 15.36 6.66 87.66 0.58 15.94 16 16 O -0.58 -21.72 14.01 -3.02 -0.04 -21.76 16 17 C -0.12 -2.46 2.13 -11.36 -0.02 -2.48 16 18 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 19 C 0.06 1.08 4.19 86.35 0.36 1.44 16 20 N -0.53 -8.96 5.22 -895.19 -4.67 -13.63 16 21 C 0.05 1.05 6.09 86.34 0.53 1.58 16 22 C -0.16 -3.52 5.43 30.77 0.17 -3.35 16 23 C -0.07 -1.37 2.59 -10.40 -0.03 -1.39 16 24 C -0.14 -1.79 5.75 30.77 0.18 -1.61 16 25 C 0.05 0.60 6.09 86.34 0.53 1.13 16 26 C 0.11 3.91 6.54 86.85 0.57 4.48 16 27 H 0.24 15.19 6.77 -92.70 -0.63 14.56 16 28 H 0.36 18.89 6.56 -92.71 -0.61 18.28 16 29 H 0.09 2.45 8.14 -2.39 -0.02 2.44 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.10 1.69 6.02 -2.39 -0.01 1.68 16 32 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.07 1.38 6.36 -2.39 -0.02 1.37 16 34 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.06 1.74 5.59 -2.39 -0.01 1.73 16 39 H 0.07 1.51 8.12 -2.39 -0.02 1.49 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.05 2.07 8.00 -2.39 -0.02 2.05 16 45 H 0.06 2.21 8.04 -2.38 -0.02 2.19 16 Total: -1.00 -70.78 339.07 -1.08 -71.86 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 0.51 Total: 31.28 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 5.07 Total: -1.50 kcal Atomic # 7 Polarization: -124.31 SS G_CDS: -8.67 Total: -132.97 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.04 Total: -21.76 kcal Atomic # 14 Polarization: 51.04 SS G_CDS: 2.05 Total: 53.09 kcal Total: -70.78 -1.08 -71.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018856995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.796 kcal (2) G-P(sol) polarization free energy of solvation -70.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds