Wall clock time and date at job start Tue Mar 31 2020 06:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99734 * 2 1 4 4 H 1.48502 * 109.46928 * 269.99510 * 3 2 1 5 5 H 1.48500 * 109.47301 * 29.99530 * 3 2 1 6 6 H 1.48503 * 109.47308 * 149.99670 * 3 2 1 7 7 C 1.38811 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99699 * 0.02562 * 7 2 1 9 9 N 1.36940 * 120.00227 * 180.02562 * 7 2 1 10 10 C 1.46495 * 119.99868 * 180.02562 * 9 7 2 11 11 H 1.08996 * 110.64479 * 323.31861 * 10 9 7 12 12 C 1.55160 * 110.72029 * 86.45789 * 10 9 7 13 13 C 1.54907 * 101.58313 * 154.04186 * 12 10 9 14 14 N 1.47428 * 104.83022 * 322.98662 * 13 12 10 15 15 C 1.34773 * 125.65057 * 204.08908 * 14 13 12 16 16 O 1.21279 * 120.00498 * 180.02562 * 15 14 13 17 17 C 1.50709 * 119.99764 * 0.03320 * 15 14 13 18 18 C 1.54990 * 113.20168 * 62.62935 * 17 15 14 19 19 C 1.54057 * 104.76220 * 147.35164 * 18 17 15 20 20 N 1.48259 * 106.73433 * 1.01569 * 19 18 17 21 21 C 1.48877 * 105.12895 * 332.53598 * 20 19 18 22 22 C 1.47679 * 108.90245 * 88.11543 * 20 19 18 23 23 C 1.52991 * 109.31448 * 312.97100 * 22 20 19 24 24 C 1.53149 * 110.09527 * 304.76620 * 23 22 20 25 25 C 1.47020 * 108.70155 * 24.36206 * 14 13 12 26 26 H 0.97001 * 120.00508 * 0.02562 * 1 2 3 27 27 H 0.96994 * 119.99705 * 0.02562 * 9 7 2 28 28 H 1.09004 * 111.00265 * 35.96469 * 12 10 9 29 29 H 1.09003 * 111.03684 * 272.12798 * 12 10 9 30 30 H 1.09000 * 110.36483 * 204.15736 * 13 12 10 31 31 H 1.08996 * 110.46347 * 81.87687 * 13 12 10 32 32 H 1.08999 * 110.38123 * 266.17394 * 18 17 15 33 33 H 1.09003 * 110.38124 * 28.42399 * 18 17 15 34 34 H 1.09003 * 110.01172 * 120.32595 * 19 18 17 35 35 H 1.08998 * 110.01854 * 241.65750 * 19 18 17 36 36 H 1.09000 * 110.91764 * 284.53484 * 21 20 19 37 37 H 1.09002 * 110.92385 * 160.88284 * 21 20 19 38 38 H 1.09002 * 109.50299 * 193.00719 * 22 20 19 39 39 H 1.09000 * 109.50091 * 72.93515 * 22 20 19 40 40 H 1.09002 * 109.36988 * 64.96411 * 23 22 20 41 41 H 1.09003 * 109.36338 * 184.70520 * 23 22 20 42 42 H 1.09000 * 109.63513 * 173.70372 * 24 23 22 43 43 H 1.09008 * 109.62869 * 294.09759 * 24 23 22 44 44 H 1.08996 * 109.88568 * 118.12680 * 25 14 13 45 45 H 1.09005 * 109.88036 * 239.29245 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0011 11 1 3.5956 -3.2127 0.6100 12 6 4.3095 -2.9907 -1.4474 13 6 5.5870 -3.8538 -1.2967 14 7 6.4269 -3.1197 -0.3328 15 6 7.7673 -3.2130 -0.2283 16 8 8.3575 -2.5596 0.6057 17 6 8.5328 -4.1291 -1.1480 18 6 8.4135 -3.7337 -2.6418 19 6 9.7663 -4.1311 -3.2624 20 7 10.5736 -4.7352 -2.1755 21 6 10.0691 -4.1087 -0.9227 22 6 10.2844 -6.1820 -2.1121 23 6 8.7704 -6.3977 -2.1538 24 6 8.0944 -5.6011 -1.0340 25 6 5.5593 -2.2740 0.5000 26 1 -0.4851 0.8400 -0.0004 27 1 3.8646 -0.3621 0.0014 28 1 4.4752 -2.1651 -2.1397 29 1 3.4621 -3.5990 -1.7637 30 1 6.0992 -3.9437 -2.2546 31 1 5.3364 -4.8405 -0.9072 32 1 7.6016 -4.2846 -3.1166 33 1 8.2504 -2.6603 -2.7385 34 1 9.6118 -4.8580 -4.0599 35 1 10.2703 -3.2482 -3.6554 36 1 10.4347 -3.0866 -0.8241 37 1 10.3430 -4.7044 -0.0519 38 1 10.6852 -6.5929 -1.1855 39 1 10.7470 -6.6831 -2.9624 40 1 8.3843 -6.0656 -3.1175 41 1 8.5526 -7.4577 -2.0231 42 1 7.0115 -5.6698 -1.1379 43 1 8.3955 -6.0021 -0.0661 44 1 5.6379 -2.5770 1.5441 45 1 5.8475 -1.2282 0.3926 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019709773.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:24 Heat of formation + Delta-G solvation = 0.769486 kcal Electronic energy + Delta-G solvation = -24832.306266 eV Core-core repulsion = 21464.164945 eV Total energy + Delta-G solvation = -3368.141321 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.62274 -39.33698 -37.36460 -34.40672 -32.77863 -32.38933 -31.45556 -29.89498 -29.50707 -28.13420 -25.15739 -24.19918 -22.94205 -22.85853 -21.26255 -20.31848 -20.12770 -19.02981 -17.79553 -17.00372 -16.40594 -16.26438 -15.77784 -15.16231 -14.59109 -14.26159 -14.09493 -14.01454 -13.60628 -13.36940 -13.23359 -13.07551 -12.89038 -12.61412 -12.41136 -12.20251 -12.10724 -11.92804 -11.65056 -11.48694 -11.26933 -11.08255 -11.01611 -10.90096 -10.76583 -10.73439 -10.54150 -10.13569 -9.71848 -9.66110 -9.03479 -8.84223 -8.53978 -7.39898 -5.86394 -3.24163 2.58758 2.97253 3.32913 3.36696 3.41408 3.65053 4.14614 4.30090 4.43001 4.51419 4.61892 4.68229 4.70300 4.74651 4.87649 5.03712 5.09712 5.10924 5.16345 5.21935 5.29002 5.36791 5.41847 5.48218 5.51929 5.55943 5.60097 5.65579 5.71925 5.74812 5.80766 5.84364 5.87762 5.90470 6.07605 6.21056 6.38588 6.44693 6.46244 6.61657 6.72746 7.58371 7.87285 8.18529 8.31962 9.08569 9.81161 9.99174 11.31253 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.031964 B = 0.003603 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.781023 B = 7769.689504 C = 7995.202349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.010 3.990 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.092 0.908 9 N -0.740 5.740 10 C 0.177 3.823 11 H 0.072 0.928 12 C -0.153 4.153 13 C 0.092 3.908 14 N -0.608 5.608 15 C 0.550 3.450 16 O -0.542 6.542 17 C -0.112 4.112 18 C -0.137 4.137 19 C 0.031 3.969 20 N -0.495 5.495 21 C 0.058 3.942 22 C 0.031 3.969 23 C -0.154 4.154 24 C -0.113 4.113 25 C 0.098 3.902 26 H 0.261 0.739 27 H 0.363 0.637 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.141 -13.942 -6.784 24.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.187 4.187 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.380 4.380 8 H 0.110 0.890 9 N -0.382 5.382 10 C 0.066 3.934 11 H 0.090 0.910 12 C -0.194 4.194 13 C -0.031 4.031 14 N -0.341 5.341 15 C 0.337 3.663 16 O -0.419 6.419 17 C -0.117 4.117 18 C -0.176 4.176 19 C -0.098 4.098 20 N -0.215 5.215 21 C -0.071 4.071 22 C -0.098 4.098 23 C -0.193 4.193 24 C -0.151 4.151 25 C -0.025 4.025 26 H 0.071 0.929 27 H 0.197 0.803 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 19.912 -13.567 -6.409 24.932 hybrid contribution -0.589 1.051 0.066 1.206 sum 19.323 -12.516 -6.344 23.880 Atomic orbital electron populations 1.69690 1.05118 1.26046 1.56818 1.24662 0.95221 0.97262 1.01541 0.86583 0.79320 0.84941 0.77887 1.20974 1.21554 1.20221 1.19019 0.80157 0.94849 1.43931 0.88985 1.42703 1.04178 1.01454 1.89858 1.21136 0.88850 0.89969 0.93436 0.91025 1.23528 0.95252 0.99458 1.01198 1.22632 0.92295 0.95659 0.92465 1.48407 1.05297 1.44240 1.36198 1.19557 0.80553 0.82266 0.83886 1.90699 1.68051 1.45993 1.37151 1.22519 0.98096 0.95655 0.95432 1.23005 0.99136 1.02534 0.92951 1.23088 0.91525 1.00221 0.94958 1.66505 1.48462 1.03357 1.03184 1.23372 0.89134 1.01636 0.92953 1.22631 0.94189 0.90026 1.02930 1.22256 0.96932 1.00711 0.99373 1.21939 1.01487 0.92064 0.99572 1.22301 0.90627 0.95030 0.94530 0.92884 0.80325 0.90676 0.90045 0.90762 0.91468 0.90069 0.90760 0.90617 0.89909 0.88974 0.89800 0.90553 0.90305 0.90971 0.90981 0.90432 0.91217 0.91303 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.46 13.97 55.49 0.78 -27.68 16 2 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 3 Si 0.88 21.71 27.74 -169.99 -4.71 16.99 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.46 6.52 56.52 0.37 -6.10 16 7 C -0.25 -6.74 10.46 -15.06 -0.16 -6.90 16 8 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 9 N -0.74 -16.71 5.06 -51.65 -0.26 -16.97 16 10 C 0.18 3.17 3.57 -66.09 -0.24 2.94 16 11 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 12 C -0.15 -2.30 6.77 -24.58 -0.17 -2.47 16 13 C 0.09 1.10 5.16 -2.53 -0.01 1.08 16 14 N -0.61 -8.72 3.33 -170.51 -0.57 -9.28 16 15 C 0.55 8.08 6.89 -10.98 -0.08 8.00 16 16 O -0.54 -9.94 16.57 5.56 0.09 -9.85 16 17 C -0.11 -1.21 0.71 -152.87 -0.11 -1.32 16 18 C -0.14 -1.27 4.36 -25.13 -0.11 -1.38 16 19 C 0.03 0.25 6.20 -2.52 -0.02 0.24 16 20 N -0.49 -4.63 6.07 -228.91 -1.39 -6.02 16 21 C 0.06 0.63 5.49 -1.52 -0.01 0.62 16 22 C 0.03 0.23 5.84 -3.40 -0.02 0.21 16 23 C -0.15 -1.07 5.52 -26.66 -0.15 -1.21 16 24 C -0.11 -0.99 4.84 -26.13 -0.13 -1.12 16 25 C 0.10 1.63 6.63 -3.06 -0.02 1.61 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.36 8.24 5.39 -40.82 -0.22 8.02 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.07 0.75 5.01 -51.93 -0.26 0.49 16 31 H 0.07 0.71 7.09 -51.93 -0.37 0.34 16 32 H 0.08 0.66 5.32 -51.93 -0.28 0.38 16 33 H 0.07 0.78 8.01 -51.93 -0.42 0.37 16 34 H 0.08 0.52 6.94 -51.93 -0.36 0.16 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 1.14 7.97 -51.93 -0.41 0.72 16 37 H 0.08 0.89 7.70 -51.93 -0.40 0.49 16 38 H 0.08 0.55 7.87 -51.93 -0.41 0.15 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.48 5.37 -51.93 -0.28 0.20 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.67 5.23 -51.93 -0.27 0.40 16 43 H 0.07 0.64 8.07 -51.92 -0.42 0.22 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.07 1.21 7.70 -51.93 -0.40 0.81 16 LS Contribution 332.41 15.07 5.01 5.01 Total: -1.00 -31.62 332.41 -9.40 -41.02 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -7.04 Total: 6.31 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -1.30 Total: 0.48 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -1.44 Total: -59.96 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 16.99 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.62 -9.40 -41.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019709773.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.786 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds