Wall clock time and date at job start Tue Mar 31 2020 06:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99734 * 2 1 4 4 H 1.48502 * 109.46928 * 269.99510 * 3 2 1 5 5 H 1.48500 * 109.47301 * 29.99530 * 3 2 1 6 6 H 1.48503 * 109.47308 * 149.99670 * 3 2 1 7 7 C 1.38811 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99699 * 0.02562 * 7 2 1 9 9 N 1.36940 * 120.00227 * 180.02562 * 7 2 1 10 10 C 1.46495 * 119.99868 * 180.02562 * 9 7 2 11 11 H 1.08996 * 110.64479 * 323.31861 * 10 9 7 12 12 C 1.55160 * 110.72029 * 86.45789 * 10 9 7 13 13 C 1.54907 * 101.58313 * 154.04186 * 12 10 9 14 14 N 1.47428 * 104.83022 * 322.98662 * 13 12 10 15 15 C 1.34773 * 125.65057 * 204.08908 * 14 13 12 16 16 O 1.21279 * 120.00498 * 180.02562 * 15 14 13 17 17 C 1.50709 * 119.99764 * 0.03320 * 15 14 13 18 18 C 1.54990 * 113.20168 * 62.62935 * 17 15 14 19 19 C 1.54057 * 104.76220 * 147.35164 * 18 17 15 20 20 N 1.48259 * 106.73433 * 1.01569 * 19 18 17 21 21 C 1.48877 * 105.12895 * 332.53598 * 20 19 18 22 22 C 1.47679 * 108.90245 * 88.11543 * 20 19 18 23 23 C 1.52991 * 109.31448 * 312.97100 * 22 20 19 24 24 C 1.53149 * 110.09527 * 304.76620 * 23 22 20 25 25 C 1.47020 * 108.70155 * 24.36206 * 14 13 12 26 26 H 0.97001 * 120.00508 * 0.02562 * 1 2 3 27 27 H 0.96994 * 119.99705 * 0.02562 * 9 7 2 28 28 H 1.09004 * 111.00265 * 35.96469 * 12 10 9 29 29 H 1.09003 * 111.03684 * 272.12798 * 12 10 9 30 30 H 1.09000 * 110.36483 * 204.15736 * 13 12 10 31 31 H 1.08996 * 110.46347 * 81.87687 * 13 12 10 32 32 H 1.08999 * 110.38123 * 266.17394 * 18 17 15 33 33 H 1.09003 * 110.38124 * 28.42399 * 18 17 15 34 34 H 1.09003 * 110.01172 * 120.32595 * 19 18 17 35 35 H 1.08998 * 110.01854 * 241.65750 * 19 18 17 36 36 H 1.09000 * 110.91764 * 284.53484 * 21 20 19 37 37 H 1.09002 * 110.92385 * 160.88284 * 21 20 19 38 38 H 1.09002 * 109.50299 * 193.00719 * 22 20 19 39 39 H 1.09000 * 109.50091 * 72.93515 * 22 20 19 40 40 H 1.09002 * 109.36988 * 64.96411 * 23 22 20 41 41 H 1.09003 * 109.36338 * 184.70520 * 23 22 20 42 42 H 1.09000 * 109.63513 * 173.70372 * 24 23 22 43 43 H 1.09008 * 109.62869 * 294.09759 * 24 23 22 44 44 H 1.08996 * 109.88568 * 118.12680 * 25 14 13 45 45 H 1.09005 * 109.88036 * 239.29245 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0011 11 1 3.5956 -3.2127 0.6100 12 6 4.3095 -2.9907 -1.4474 13 6 5.5870 -3.8538 -1.2967 14 7 6.4269 -3.1197 -0.3328 15 6 7.7673 -3.2130 -0.2283 16 8 8.3575 -2.5596 0.6057 17 6 8.5328 -4.1291 -1.1480 18 6 8.4135 -3.7337 -2.6418 19 6 9.7663 -4.1311 -3.2624 20 7 10.5736 -4.7352 -2.1755 21 6 10.0691 -4.1087 -0.9227 22 6 10.2844 -6.1820 -2.1121 23 6 8.7704 -6.3977 -2.1538 24 6 8.0944 -5.6011 -1.0340 25 6 5.5593 -2.2740 0.5000 26 1 -0.4851 0.8400 -0.0004 27 1 3.8646 -0.3621 0.0014 28 1 4.4752 -2.1651 -2.1397 29 1 3.4621 -3.5990 -1.7637 30 1 6.0992 -3.9437 -2.2546 31 1 5.3364 -4.8405 -0.9072 32 1 7.6016 -4.2846 -3.1166 33 1 8.2504 -2.6603 -2.7385 34 1 9.6118 -4.8580 -4.0599 35 1 10.2703 -3.2482 -3.6554 36 1 10.4347 -3.0866 -0.8241 37 1 10.3430 -4.7044 -0.0519 38 1 10.6852 -6.5929 -1.1855 39 1 10.7470 -6.6831 -2.9624 40 1 8.3843 -6.0656 -3.1175 41 1 8.5526 -7.4577 -2.0231 42 1 7.0115 -5.6698 -1.1379 43 1 8.3955 -6.0021 -0.0661 44 1 5.6379 -2.5770 1.5441 45 1 5.8475 -1.2282 0.3926 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019709773.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:24 Heat of formation + Delta-G solvation = -22.672054 kcal Electronic energy + Delta-G solvation = -24833.322767 eV Core-core repulsion = 21464.164945 eV Total energy + Delta-G solvation = -3369.157822 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.45871 -40.45267 -38.69826 -36.11069 -33.93487 -33.14668 -32.95125 -31.26733 -30.26307 -29.55276 -26.11558 -25.38909 -24.44819 -23.78018 -22.10833 -21.72468 -20.98287 -20.01795 -19.75950 -17.96719 -17.56031 -17.15906 -16.92748 -16.29058 -16.07445 -15.76456 -15.27796 -14.93804 -14.82420 -14.49976 -14.45926 -14.07334 -13.72094 -13.63548 -13.54590 -13.51470 -13.37059 -13.13485 -12.82108 -12.69760 -12.47152 -12.27152 -12.24559 -11.96187 -11.84363 -11.78695 -11.70397 -11.58805 -11.45099 -11.00117 -10.81577 -9.77695 -9.50886 -9.36600 -8.04887 -5.39471 1.37330 1.38034 1.45036 1.46068 1.82187 2.45405 2.92104 3.23994 3.32535 3.47573 3.50984 3.65628 3.67429 3.84587 3.96909 4.06969 4.11398 4.13093 4.20727 4.29883 4.36141 4.39806 4.44838 4.53262 4.59117 4.62610 4.73546 4.81168 4.89562 4.93866 4.94730 4.96685 5.07186 5.09325 5.12618 5.17556 5.23082 5.30134 5.36924 5.74399 5.74954 5.99250 6.18673 6.44207 7.01051 7.03678 7.77683 7.95196 9.15920 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.031964 B = 0.003603 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.781023 B = 7769.689504 C = 7995.202349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.057 4.057 3 Si 0.946 3.054 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.260 1.260 7 C -0.228 4.228 8 H 0.068 0.932 9 N -0.746 5.746 10 C 0.169 3.831 11 H 0.070 0.930 12 C -0.145 4.145 13 C 0.101 3.899 14 N -0.607 5.607 15 C 0.545 3.455 16 O -0.586 6.586 17 C -0.109 4.109 18 C -0.133 4.133 19 C 0.032 3.968 20 N -0.504 5.504 21 C 0.059 3.941 22 C 0.028 3.972 23 C -0.146 4.146 24 C -0.110 4.110 25 C 0.106 3.894 26 H 0.258 0.742 27 H 0.364 0.636 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.860 -15.824 -8.490 27.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.249 4.249 3 Si 0.775 3.225 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.185 1.185 7 C -0.358 4.358 8 H 0.086 0.914 9 N -0.389 5.389 10 C 0.060 3.940 11 H 0.088 0.912 12 C -0.186 4.186 13 C -0.020 4.020 14 N -0.340 5.340 15 C 0.335 3.665 16 O -0.467 6.467 17 C -0.114 4.114 18 C -0.172 4.172 19 C -0.096 4.096 20 N -0.224 5.224 21 C -0.070 4.070 22 C -0.100 4.100 23 C -0.185 4.185 24 C -0.148 4.148 25 C -0.018 4.018 26 H 0.067 0.933 27 H 0.197 0.803 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.101 0.899 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 21.682 -15.505 -8.141 27.870 hybrid contribution -1.075 1.538 0.630 1.979 sum 20.607 -13.967 -7.510 26.002 Atomic orbital electron populations 1.69848 1.06906 1.26648 1.59530 1.25381 0.95965 1.00817 1.02705 0.85542 0.78494 0.80462 0.78049 1.20420 1.22300 1.18459 1.18997 0.81968 0.93710 1.41166 0.91442 1.42710 1.02784 1.03294 1.90095 1.21326 0.88996 0.88038 0.95629 0.91176 1.23357 0.97248 0.99700 0.98289 1.22753 0.90387 0.95539 0.93360 1.48462 1.05385 1.43968 1.36158 1.20311 0.80398 0.82059 0.83742 1.90675 1.68869 1.47904 1.39207 1.22480 0.97306 0.96211 0.95419 1.23016 1.00531 1.01873 0.91774 1.23124 0.90614 1.00768 0.95068 1.66485 1.48830 1.04630 1.02463 1.23255 0.89361 1.00489 0.93925 1.22727 0.94936 0.88626 1.03682 1.22223 0.96044 1.01377 0.98845 1.21966 1.02049 0.90401 1.00359 1.22023 0.90195 0.94712 0.94884 0.93280 0.80307 0.91670 0.89410 0.88021 0.88953 0.88000 0.92339 0.88262 0.90329 0.91398 0.90075 0.90654 0.88706 0.89901 0.89212 0.89751 0.91769 0.91591 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.30 13.97 21.65 0.30 -61.00 16 2 C -0.06 -3.26 5.50 84.86 0.47 -2.79 16 3 Si 0.95 45.19 27.74 68.60 1.90 47.09 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.26 -11.51 6.52 99.48 0.65 -10.86 16 7 C -0.23 -12.38 10.46 84.03 0.88 -11.50 16 8 H 0.07 3.95 8.06 -2.91 -0.02 3.92 16 9 N -0.75 -33.39 5.06 -317.32 -1.61 -34.99 16 10 C 0.17 5.91 3.57 46.19 0.17 6.07 16 11 H 0.07 2.49 8.12 -2.39 -0.02 2.47 16 12 C -0.15 -4.06 6.77 31.99 0.22 -3.85 16 13 C 0.10 2.08 5.16 86.85 0.45 2.53 16 14 N -0.61 -16.44 3.33 -811.77 -2.70 -19.14 16 15 C 0.55 15.53 6.89 87.66 0.60 16.13 16 16 O -0.59 -21.80 16.57 -3.03 -0.05 -21.85 16 17 C -0.11 -2.15 0.71 -51.12 -0.04 -2.18 16 18 C -0.13 -2.09 4.36 31.63 0.14 -1.95 16 19 C 0.03 0.45 6.20 86.40 0.54 0.98 16 20 N -0.50 -8.28 6.07 -878.12 -5.33 -13.61 16 21 C 0.06 1.23 5.49 86.70 0.48 1.71 16 22 C 0.03 0.33 5.84 86.15 0.50 0.83 16 23 C -0.15 -1.39 5.52 30.64 0.17 -1.22 16 24 C -0.11 -1.57 4.84 30.99 0.15 -1.42 16 25 C 0.11 3.45 6.63 86.73 0.58 4.03 16 26 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 27 H 0.36 16.18 5.39 -92.71 -0.50 15.68 16 28 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 29 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.10 1.60 5.01 -2.39 -0.01 1.58 16 31 H 0.09 1.53 7.09 -2.39 -0.02 1.51 16 32 H 0.10 1.16 5.32 -2.39 -0.01 1.15 16 33 H 0.06 1.12 8.01 -2.39 -0.02 1.10 16 34 H 0.10 0.92 6.94 -2.39 -0.02 0.91 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.72 7.97 -2.39 -0.02 1.70 16 37 H 0.08 1.69 7.70 -2.39 -0.02 1.67 16 38 H 0.07 0.89 7.87 -2.39 -0.02 0.87 16 39 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 0.65 5.37 -2.39 -0.01 0.64 16 41 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.08 1.09 5.23 -2.39 -0.01 1.08 16 43 H 0.06 1.01 8.07 -2.38 -0.02 0.99 16 44 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.05 1.84 7.70 -2.38 -0.02 1.82 16 Total: -1.00 -70.34 332.41 -1.76 -72.10 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.44 Total: 24.04 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 5.29 Total: 7.36 kcal Atomic # 7 Polarization: -119.41 SS G_CDS: -9.34 Total: -128.74 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.05 Total: -21.85 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.09 kcal Total: -70.34 -1.76 -72.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019709773.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.425 kcal (2) G-P(sol) polarization free energy of solvation -70.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds