Wall clock time and date at job start Tue Mar 31 2020 06:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00275 * 2 1 4 4 H 1.48494 * 109.47624 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47095 * 300.00151 * 3 2 1 6 6 H 1.48506 * 109.47025 * 59.99620 * 3 2 1 7 7 C 1.38824 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99951 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99622 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99618 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.85221 * 334.67126 * 10 9 7 12 12 C 1.53785 * 113.68813 * 105.94148 * 10 9 7 13 13 C 1.53777 * 87.08241 * 89.12417 * 12 10 9 14 14 H 1.08998 * 113.69520 * 270.87557 * 13 12 10 15 15 N 1.46499 * 113.61486 * 139.97730 * 13 12 10 16 16 C 1.34774 * 119.99884 * 107.49951 * 15 13 12 17 17 O 1.21286 * 120.00054 * 0.02562 * 16 15 13 18 18 C 1.50705 * 120.00141 * 180.02562 * 16 15 13 19 19 H 1.08994 * 109.57720 * 299.74130 * 18 16 15 20 20 C 1.53139 * 109.57722 * 60.00435 * 18 16 15 21 21 N 1.46904 * 109.37108 * 119.81073 * 20 18 16 22 22 C 1.46941 * 111.05885 * 297.99737 * 21 20 18 23 23 C 1.53126 * 109.35331 * 61.95133 * 22 21 20 24 24 C 1.53386 * 109.57789 * 179.34494 * 18 16 15 25 25 C 1.53393 * 108.59663 * 181.22978 * 24 18 16 26 26 C 1.46947 * 111.05737 * 61.99153 * 21 20 18 27 27 C 1.53781 * 113.61339 * 203.47656 * 10 9 7 28 28 H 0.96996 * 120.00147 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00232 * 0.02562 * 9 7 2 30 30 H 1.08999 * 113.61060 * 203.67840 * 12 10 9 31 31 H 1.08997 * 113.61198 * 334.57634 * 12 10 9 32 32 H 0.97004 * 120.00097 * 287.50765 * 15 13 12 33 33 H 1.08994 * 109.49068 * 239.78526 * 20 18 16 34 34 H 1.09004 * 109.48514 * 359.84468 * 20 18 16 35 35 H 1.08997 * 109.49251 * 181.91590 * 22 21 20 36 36 H 1.08999 * 109.48922 * 301.99184 * 22 21 20 37 37 H 1.08997 * 109.58142 * 240.26167 * 23 22 21 38 38 H 1.09001 * 109.57765 * 119.87659 * 23 22 21 39 39 H 1.09004 * 110.11384 * 60.58887 * 24 18 16 40 40 H 1.08999 * 109.57419 * 299.18893 * 25 24 18 41 41 H 1.09000 * 109.57752 * 178.80987 * 25 24 18 42 42 H 1.09004 * 109.48804 * 57.99803 * 26 21 20 43 43 H 1.08997 * 109.49232 * 178.07591 * 26 21 20 44 44 H 1.09000 * 113.61578 * 25.34726 * 27 10 9 45 45 H 1.09001 * 113.61682 * 156.17306 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0016 11 1 3.0557 -3.5697 -0.4289 12 6 2.0331 -4.3847 1.3561 13 6 0.7423 -5.0688 0.8758 14 1 -0.1637 -4.5123 1.1155 15 7 0.6555 -6.4837 1.2455 16 6 -0.1998 -6.8768 2.2100 17 8 -0.8979 -6.0593 2.7716 18 6 -0.2888 -8.3323 2.5908 19 1 -0.5901 -8.9190 1.7232 20 6 1.0759 -8.8167 3.0891 21 7 0.9496 -9.2876 4.4748 22 6 0.5258 -8.1988 5.3659 23 6 -0.8541 -7.6961 4.9322 24 6 -1.3170 -8.5074 3.7155 25 6 -1.3670 -9.9899 4.1061 26 6 0.0273 -10.4282 4.5629 27 6 1.2464 -4.8368 -0.5586 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3881 0.0016 30 1 2.8660 -5.0735 1.4970 31 1 1.8842 -3.7194 2.2065 32 1 1.2136 -7.1376 0.7962 33 1 1.4245 -9.6338 2.4576 34 1 1.7906 -7.9947 3.0481 35 1 0.4732 -8.5670 6.3905 36 1 1.2449 -7.3816 5.3092 37 1 -0.7912 -6.6412 4.6653 38 1 -1.5637 -7.8263 5.7493 39 1 -2.2994 -8.1747 3.3803 40 1 -1.6729 -10.5843 3.2452 41 1 -2.0785 -10.1294 4.9200 42 1 0.3835 -11.2342 3.9212 43 1 -0.0211 -10.7781 5.5940 44 1 0.4623 -4.5365 -1.2537 45 1 1.8642 -5.6487 -0.9424 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020161793.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:29 Heat of formation + Delta-G solvation = 1.462348 kcal Electronic energy + Delta-G solvation = -24269.113287 eV Core-core repulsion = 20901.002011 eV Total energy + Delta-G solvation = -3368.111276 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.39366 -39.30893 -37.74679 -34.11189 -32.85475 -32.38524 -31.31033 -31.06927 -29.60216 -25.12035 -25.00294 -23.81423 -23.29508 -23.07342 -22.45305 -20.42548 -18.86512 -17.63489 -17.41061 -17.25450 -16.67200 -16.51244 -15.80619 -15.23290 -14.88391 -14.64541 -13.98613 -13.57291 -13.27063 -13.07620 -13.05541 -12.72357 -12.53105 -12.39208 -12.36255 -12.31206 -12.00889 -11.84063 -11.66869 -11.60645 -11.21200 -10.89302 -10.79695 -10.53442 -10.41044 -10.22960 -10.13234 -9.82396 -9.71830 -9.38977 -8.92169 -8.69507 -8.43529 -7.00777 -5.79637 -3.09652 2.73893 3.30535 3.42624 3.48060 3.50610 3.73400 4.28310 4.42920 4.55964 4.64080 4.79432 4.91200 4.94079 4.95393 5.06683 5.08904 5.18891 5.22924 5.25072 5.37996 5.39328 5.47688 5.52203 5.60820 5.70046 5.75692 5.87002 5.91957 5.97454 6.00658 6.01961 6.08505 6.19551 6.30832 6.40945 6.63104 6.72836 6.78482 6.82063 6.82758 7.04099 7.67642 7.70445 8.38429 8.39486 9.49387 10.05765 10.39674 11.42650 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.031913 B = 0.003065 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.179574 B = 9131.800454 C = 9300.452656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.171 3.829 11 H 0.067 0.933 12 C -0.183 4.183 13 C 0.126 3.874 14 H 0.112 0.888 15 N -0.717 5.717 16 C 0.515 3.485 17 O -0.533 6.533 18 C -0.141 4.141 19 H 0.097 0.903 20 C 0.061 3.939 21 N -0.527 5.527 22 C 0.051 3.949 23 C -0.161 4.161 24 C -0.065 4.065 25 C -0.151 4.151 26 C 0.051 3.949 27 C -0.164 4.164 28 H 0.256 0.744 29 H 0.386 0.614 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.395 0.605 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.582 -23.807 6.249 24.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.058 3.942 11 H 0.085 0.915 12 C -0.226 4.226 13 C 0.022 3.978 14 H 0.130 0.870 15 N -0.367 5.367 16 C 0.301 3.699 17 O -0.409 6.409 18 C -0.164 4.164 19 H 0.115 0.885 20 C -0.068 4.068 21 N -0.247 5.247 22 C -0.077 4.077 23 C -0.200 4.200 24 C -0.085 4.085 25 C -0.190 4.190 26 C -0.077 4.077 27 C -0.204 4.204 28 H 0.066 0.934 29 H 0.220 0.780 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.229 0.771 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.115 0.885 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.689 -23.191 6.811 24.180 hybrid contribution -0.561 0.815 -0.502 1.109 sum 0.128 -22.376 6.309 23.249 Atomic orbital electron populations 1.69675 1.05160 1.25744 1.57188 1.24789 0.95538 0.97853 1.02631 0.86093 0.78789 0.83944 0.77200 1.20466 1.21817 1.21802 1.19313 0.91134 0.83880 1.43220 0.90872 1.42204 1.05759 0.99426 1.87061 1.20910 0.95144 0.85431 0.92694 0.91491 1.24298 0.96132 0.99715 1.02415 1.22625 0.99727 0.79805 0.95657 0.86988 1.46151 1.41768 1.10050 1.38739 1.20496 0.79619 0.90254 0.79535 1.90665 1.43297 1.54724 1.52252 1.22128 0.99510 0.94464 1.00342 0.88529 1.22244 0.94209 1.00749 0.89590 1.62520 1.47522 1.07900 1.06784 1.22236 0.95553 0.93533 0.96389 1.22467 0.97404 1.02996 0.97108 1.20884 0.98439 0.94759 0.94397 1.22312 0.98930 0.96069 1.01694 1.22221 0.90105 0.93397 1.01976 1.23879 1.00842 0.99933 0.95733 0.93419 0.77997 0.91313 0.91122 0.77133 0.89841 0.89928 0.90773 0.90675 0.88487 0.92025 0.89874 0.91644 0.91324 0.90659 0.90623 0.90949 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.79 9.97 -15.06 -0.15 -6.94 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.71 -17.70 5.31 -52.63 -0.28 -17.98 16 10 C 0.17 3.33 4.55 -67.12 -0.31 3.02 16 11 H 0.07 1.28 8.11 -51.93 -0.42 0.86 16 12 C -0.18 -3.20 7.68 -25.92 -0.20 -3.40 16 13 C 0.13 2.05 4.13 -67.11 -0.28 1.77 16 14 H 0.11 2.25 7.46 -51.93 -0.39 1.86 16 15 N -0.72 -9.13 5.10 -53.01 -0.27 -9.40 16 16 C 0.52 7.14 6.59 -10.98 -0.07 7.07 16 17 O -0.53 -9.73 13.35 5.55 0.07 -9.65 16 18 C -0.14 -1.43 2.60 -91.50 -0.24 -1.67 16 19 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 20 C 0.06 0.55 5.60 -3.75 -0.02 0.53 16 21 N -0.53 -5.02 5.22 -234.30 -1.22 -6.24 16 22 C 0.05 0.53 6.09 -3.74 -0.02 0.51 16 23 C -0.16 -1.87 5.43 -26.46 -0.14 -2.01 16 24 C -0.07 -0.69 2.59 -90.01 -0.23 -0.92 16 25 C -0.15 -1.21 5.75 -26.46 -0.15 -1.36 16 26 C 0.05 0.40 6.09 -3.73 -0.02 0.38 16 27 C -0.16 -2.56 7.57 -25.91 -0.20 -2.76 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.39 10.37 7.90 -40.82 -0.32 10.05 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.40 3.74 8.63 -40.82 -0.35 3.39 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.82 7.45 -51.93 -0.39 0.44 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.10 1.45 5.59 -51.93 -0.29 1.16 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.99 8.12 -51.93 -0.42 0.57 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.08 0.98 8.12 -51.93 -0.42 0.56 16 LS Contribution 348.31 15.07 5.25 5.25 Total: -1.00 -31.97 348.31 -10.50 -42.47 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -7.62 Total: 11.96 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -2.13 Total: -6.20 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: -1.05 Total: -61.23 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.07 Total: -9.65 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.97 -10.50 -42.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020161793.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.936 kcal (2) G-P(sol) polarization free energy of solvation -31.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds