Wall clock time and date at job start Tue Mar 31 2020 07:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00433 * 2 1 4 4 H 1.48508 * 109.47203 * 270.00594 * 3 2 1 5 5 H 1.48506 * 109.46875 * 30.00160 * 3 2 1 6 6 H 1.48498 * 109.47445 * 150.00159 * 3 2 1 7 7 C 1.38817 * 119.99702 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00116 * 359.97438 * 7 2 1 9 9 N 1.36942 * 119.99888 * 179.97438 * 7 2 1 10 10 C 1.46494 * 120.00058 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.85032 * 336.19763 * 10 9 7 12 12 C 1.53778 * 113.61410 * 107.49886 * 10 9 7 13 13 C 1.53789 * 87.07931 * 139.98129 * 12 10 9 14 14 H 1.09001 * 113.68609 * 220.00653 * 13 12 10 15 15 N 1.46504 * 113.61213 * 89.11751 * 13 12 10 16 16 C 1.34783 * 119.99813 * 107.49941 * 15 13 12 17 17 O 1.21276 * 119.99931 * 0.02562 * 16 15 13 18 18 C 1.50699 * 119.99705 * 179.97438 * 16 15 13 19 19 C 1.54997 * 113.19981 * 61.45978 * 18 16 15 20 20 C 1.54049 * 104.76432 * 146.46511 * 19 18 16 21 21 N 1.48238 * 106.70087 * 1.01976 * 20 19 18 22 22 C 1.48811 * 105.17273 * 332.51142 * 21 20 19 23 23 C 1.47669 * 108.91300 * 88.16133 * 21 20 19 24 24 C 1.52989 * 109.28905 * 312.91780 * 23 21 20 25 25 C 1.53153 * 110.08883 * 304.78545 * 24 23 21 26 26 C 1.53772 * 87.08136 * 334.56913 * 13 12 10 27 27 H 0.97004 * 119.99517 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99863 * 359.97438 * 9 7 2 29 29 H 1.08997 * 113.61741 * 25.43862 * 12 10 9 30 30 H 1.09001 * 113.61959 * 254.52715 * 12 10 9 31 31 H 0.96990 * 119.99906 * 287.50264 * 15 13 12 32 32 H 1.08999 * 110.37793 * 265.28888 * 19 18 16 33 33 H 1.09003 * 110.37650 * 27.64139 * 19 18 16 34 34 H 1.09006 * 110.01157 * 120.33033 * 20 19 18 35 35 H 1.09004 * 110.01898 * 241.70331 * 20 19 18 36 36 H 1.09002 * 110.92883 * 284.56648 * 22 21 20 37 37 H 1.08998 * 110.96037 * 160.91478 * 22 21 20 38 38 H 1.09004 * 109.50434 * 72.86521 * 23 21 20 39 39 H 1.09001 * 109.50570 * 192.93118 * 23 21 20 40 40 H 1.08992 * 109.36856 * 64.97786 * 24 23 21 41 41 H 1.08998 * 109.36677 * 184.72441 * 24 23 21 42 42 H 1.08998 * 109.63444 * 294.29448 * 25 24 23 43 43 H 1.09004 * 109.62683 * 173.70132 * 25 24 23 44 44 H 1.09000 * 113.61541 * 139.98233 * 26 13 12 45 45 H 1.09003 * 113.61559 * 270.80012 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 1 3.5279 -3.2970 0.4047 12 6 4.7865 -2.7929 -1.3451 13 6 5.9843 -3.3096 -0.5306 14 1 6.9514 -3.0435 -0.9572 15 7 5.8878 -4.7291 -0.1812 16 6 6.6780 -5.6301 -0.7979 17 8 7.4691 -5.2658 -1.6418 18 6 6.5791 -7.0902 -0.4380 19 6 5.1811 -7.6959 -0.7229 20 6 5.4614 -9.1539 -1.1340 21 7 6.9293 -9.3445 -1.0536 22 6 7.5108 -7.9951 -1.2891 23 6 7.2831 -9.7631 0.3176 24 6 6.5720 -8.8550 1.3226 25 6 6.9086 -7.3885 1.0365 26 6 5.5263 -2.3659 0.5938 27 1 -0.4849 0.8401 0.0004 28 1 3.8646 -0.3622 -0.0014 29 1 5.0131 -1.9099 -1.9425 30 1 4.2772 -3.5708 -1.9140 31 1 5.2553 -5.0204 0.4940 32 1 4.5646 -7.6667 0.1755 33 1 4.6935 -7.1591 -1.5366 34 1 4.9584 -9.8376 -0.4501 35 1 5.1181 -9.3265 -2.1541 36 1 7.4568 -7.7266 -2.3442 37 1 8.5381 -7.9449 -0.9285 38 1 6.9704 -10.7954 0.4751 39 1 8.3616 -9.6848 0.4551 40 1 5.4949 -9.0009 1.2426 41 1 6.8971 -9.1083 2.3317 42 1 7.9693 -7.2143 1.2171 43 1 6.3133 -6.7434 1.6826 44 1 5.6142 -2.7990 1.5902 45 1 5.9562 -1.3665 0.5273 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020985673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:24 Heat of formation + Delta-G solvation = 8.920687 kcal Electronic energy + Delta-G solvation = -24231.322465 eV Core-core repulsion = 20863.534607 eV Total energy + Delta-G solvation = -3367.787858 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.57598 -39.60982 -37.88963 -34.22861 -33.12519 -32.47051 -31.93895 -30.40326 -29.53465 -25.35112 -25.28531 -24.68516 -23.52265 -22.17532 -21.76188 -20.62740 -19.50039 -19.22542 -17.59612 -17.30487 -16.55488 -16.15511 -15.43592 -15.02741 -14.78404 -14.58647 -14.28069 -14.16677 -13.48237 -13.30130 -13.18518 -13.01215 -12.93769 -12.67711 -12.28639 -12.22399 -12.05325 -11.98312 -11.83028 -11.36954 -11.11880 -11.07021 -11.03907 -10.90853 -10.79904 -10.45224 -10.24791 -9.94286 -9.75656 -9.61831 -8.99220 -8.87570 -8.84716 -7.33143 -5.83724 -3.19771 2.52863 3.08319 3.33154 3.36246 3.41525 3.63721 4.15122 4.30306 4.38789 4.53251 4.61272 4.68042 4.73393 4.79513 4.91305 5.03536 5.06049 5.11366 5.18108 5.22131 5.31317 5.37203 5.41714 5.49321 5.54650 5.62096 5.65432 5.67323 5.71381 5.75093 5.84130 5.87082 5.93544 6.06841 6.13913 6.38868 6.42706 6.47912 6.53513 6.60678 6.90970 7.50942 7.91635 8.19824 8.35804 9.13195 9.85867 10.05346 11.34388 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.030366 B = 0.003168 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.856961 B = 8837.363838 C = 9160.127672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.090 0.910 9 N -0.736 5.736 10 C 0.173 3.827 11 H 0.081 0.919 12 C -0.175 4.175 13 C 0.116 3.884 14 H 0.097 0.903 15 N -0.703 5.703 16 C 0.540 3.460 17 O -0.539 6.539 18 C -0.119 4.119 19 C -0.138 4.138 20 C 0.031 3.969 21 N -0.496 5.496 22 C 0.058 3.942 23 C 0.031 3.969 24 C -0.155 4.155 25 C -0.105 4.105 26 C -0.162 4.162 27 H 0.260 0.740 28 H 0.363 0.637 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.400 0.600 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.156 -19.005 2.767 24.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.190 4.190 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.108 0.892 9 N -0.376 5.376 10 C 0.061 3.939 11 H 0.099 0.901 12 C -0.217 4.217 13 C 0.010 3.990 14 H 0.115 0.885 15 N -0.353 5.353 16 C 0.326 3.674 17 O -0.415 6.415 18 C -0.124 4.124 19 C -0.177 4.177 20 C -0.098 4.098 21 N -0.216 5.216 22 C -0.071 4.071 23 C -0.098 4.098 24 C -0.194 4.194 25 C -0.142 4.142 26 C -0.202 4.202 27 H 0.070 0.930 28 H 0.196 0.804 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.235 0.765 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 15.648 -19.243 1.762 24.865 hybrid contribution -0.187 1.840 0.998 2.101 sum 15.461 -17.403 2.759 23.442 Atomic orbital electron populations 1.69704 1.05149 1.25952 1.57109 1.24701 0.95265 0.97316 1.01743 0.86546 0.79200 0.84880 0.77872 1.20979 1.21668 1.20276 1.19120 0.80643 0.94765 1.43515 0.89190 1.42748 1.04121 1.01964 1.88775 1.21597 0.89398 0.90021 0.92848 0.90101 1.24266 0.96587 1.00839 1.00051 1.21808 0.99908 0.79345 0.97909 0.88527 1.45695 1.40502 1.07070 1.42026 1.19854 0.80060 0.86556 0.80979 1.90693 1.37628 1.80690 1.32521 1.22626 0.98443 0.92873 0.98493 1.22959 0.95127 0.96924 1.02684 1.23082 0.89270 0.94943 1.02497 1.66444 1.07308 1.23876 1.23971 1.23378 0.97376 0.85719 1.00653 1.22627 1.00616 0.98903 0.87618 1.22263 1.01924 0.94845 1.00377 1.21795 1.02258 0.96907 0.93280 1.23878 0.99406 0.99372 0.97574 0.92971 0.80373 0.89652 0.91990 0.76541 0.90197 0.90533 0.90599 0.89838 0.88931 0.89837 0.90285 0.90570 0.90835 0.90978 0.91121 0.91057 0.91485 0.89234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.89 13.97 55.49 0.78 -28.12 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 21.77 27.73 -169.99 -4.71 17.05 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 7 C -0.25 -6.91 10.45 -15.05 -0.16 -7.07 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 9 N -0.74 -16.87 5.20 -52.64 -0.27 -17.14 16 10 C 0.17 3.11 4.36 -67.12 -0.29 2.82 16 11 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 12 C -0.18 -2.90 7.68 -25.92 -0.20 -3.10 16 13 C 0.12 1.63 4.32 -67.12 -0.29 1.34 16 14 H 0.10 1.44 7.46 -51.93 -0.39 1.06 16 15 N -0.70 -8.50 5.25 -53.01 -0.28 -8.78 16 16 C 0.54 6.94 6.81 -10.98 -0.07 6.87 16 17 O -0.54 -8.93 15.78 5.56 0.09 -8.84 16 18 C -0.12 -1.15 0.96 -152.87 -0.15 -1.30 16 19 C -0.14 -1.19 5.49 -25.13 -0.14 -1.32 16 20 C 0.03 0.25 6.20 -2.54 -0.02 0.23 16 21 N -0.50 -4.43 6.07 -228.99 -1.39 -5.82 16 22 C 0.06 0.58 5.44 -1.55 -0.01 0.57 16 23 C 0.03 0.22 5.84 -3.41 -0.02 0.20 16 24 C -0.16 -1.00 5.52 -26.66 -0.15 -1.15 16 25 C -0.10 -0.81 5.03 -26.13 -0.13 -0.94 16 26 C -0.16 -2.35 7.58 -25.92 -0.20 -2.54 16 27 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 28 H 0.36 8.18 5.79 -40.82 -0.24 7.95 16 29 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.40 4.10 8.50 -40.82 -0.35 3.75 16 32 H 0.08 0.59 6.94 -51.93 -0.36 0.23 16 33 H 0.08 0.75 8.00 -51.93 -0.42 0.34 16 34 H 0.08 0.51 6.94 -51.93 -0.36 0.15 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.08 7.94 -51.93 -0.41 0.67 16 37 H 0.08 0.82 7.70 -51.93 -0.40 0.42 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.52 7.87 -51.93 -0.41 0.11 16 40 H 0.07 0.47 5.37 -51.93 -0.28 0.19 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 43 H 0.07 0.52 7.94 -51.93 -0.41 0.11 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.09 1.29 8.12 -51.93 -0.42 0.87 16 LS Contribution 345.87 15.07 5.21 5.21 Total: -1.00 -32.23 345.87 -9.90 -42.14 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -7.41 Total: 9.61 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -1.91 Total: -5.32 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -1.17 Total: -59.85 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.05 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.23 -9.90 -42.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020985673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.057 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds