Wall clock time and date at job start Tue Mar 31 2020 07:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00433 * 2 1 4 4 H 1.48508 * 109.47203 * 270.00594 * 3 2 1 5 5 H 1.48506 * 109.46875 * 30.00160 * 3 2 1 6 6 H 1.48498 * 109.47445 * 150.00159 * 3 2 1 7 7 C 1.38817 * 119.99702 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00116 * 359.97438 * 7 2 1 9 9 N 1.36942 * 119.99888 * 179.97438 * 7 2 1 10 10 C 1.46494 * 120.00058 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.85032 * 336.19763 * 10 9 7 12 12 C 1.53778 * 113.61410 * 107.49886 * 10 9 7 13 13 C 1.53789 * 87.07931 * 139.98129 * 12 10 9 14 14 H 1.09001 * 113.68609 * 220.00653 * 13 12 10 15 15 N 1.46504 * 113.61213 * 89.11751 * 13 12 10 16 16 C 1.34783 * 119.99813 * 107.49941 * 15 13 12 17 17 O 1.21276 * 119.99931 * 0.02562 * 16 15 13 18 18 C 1.50699 * 119.99705 * 179.97438 * 16 15 13 19 19 C 1.54997 * 113.19981 * 61.45978 * 18 16 15 20 20 C 1.54049 * 104.76432 * 146.46511 * 19 18 16 21 21 N 1.48238 * 106.70087 * 1.01976 * 20 19 18 22 22 C 1.48811 * 105.17273 * 332.51142 * 21 20 19 23 23 C 1.47669 * 108.91300 * 88.16133 * 21 20 19 24 24 C 1.52989 * 109.28905 * 312.91780 * 23 21 20 25 25 C 1.53153 * 110.08883 * 304.78545 * 24 23 21 26 26 C 1.53772 * 87.08136 * 334.56913 * 13 12 10 27 27 H 0.97004 * 119.99517 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99863 * 359.97438 * 9 7 2 29 29 H 1.08997 * 113.61741 * 25.43862 * 12 10 9 30 30 H 1.09001 * 113.61959 * 254.52715 * 12 10 9 31 31 H 0.96990 * 119.99906 * 287.50264 * 15 13 12 32 32 H 1.08999 * 110.37793 * 265.28888 * 19 18 16 33 33 H 1.09003 * 110.37650 * 27.64139 * 19 18 16 34 34 H 1.09006 * 110.01157 * 120.33033 * 20 19 18 35 35 H 1.09004 * 110.01898 * 241.70331 * 20 19 18 36 36 H 1.09002 * 110.92883 * 284.56648 * 22 21 20 37 37 H 1.08998 * 110.96037 * 160.91478 * 22 21 20 38 38 H 1.09004 * 109.50434 * 72.86521 * 23 21 20 39 39 H 1.09001 * 109.50570 * 192.93118 * 23 21 20 40 40 H 1.08992 * 109.36856 * 64.97786 * 24 23 21 41 41 H 1.08998 * 109.36677 * 184.72441 * 24 23 21 42 42 H 1.08998 * 109.63444 * 294.29448 * 25 24 23 43 43 H 1.09004 * 109.62683 * 173.70132 * 25 24 23 44 44 H 1.09000 * 113.61541 * 139.98233 * 26 13 12 45 45 H 1.09003 * 113.61559 * 270.80012 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 1 3.5279 -3.2970 0.4047 12 6 4.7865 -2.7929 -1.3451 13 6 5.9843 -3.3096 -0.5306 14 1 6.9514 -3.0435 -0.9572 15 7 5.8878 -4.7291 -0.1812 16 6 6.6780 -5.6301 -0.7979 17 8 7.4691 -5.2658 -1.6418 18 6 6.5791 -7.0902 -0.4380 19 6 5.1811 -7.6959 -0.7229 20 6 5.4614 -9.1539 -1.1340 21 7 6.9293 -9.3445 -1.0536 22 6 7.5108 -7.9951 -1.2891 23 6 7.2831 -9.7631 0.3176 24 6 6.5720 -8.8550 1.3226 25 6 6.9086 -7.3885 1.0365 26 6 5.5263 -2.3659 0.5938 27 1 -0.4849 0.8401 0.0004 28 1 3.8646 -0.3622 -0.0014 29 1 5.0131 -1.9099 -1.9425 30 1 4.2772 -3.5708 -1.9140 31 1 5.2553 -5.0204 0.4940 32 1 4.5646 -7.6667 0.1755 33 1 4.6935 -7.1591 -1.5366 34 1 4.9584 -9.8376 -0.4501 35 1 5.1181 -9.3265 -2.1541 36 1 7.4568 -7.7266 -2.3442 37 1 8.5381 -7.9449 -0.9285 38 1 6.9704 -10.7954 0.4751 39 1 8.3616 -9.6848 0.4551 40 1 5.4949 -9.0009 1.2426 41 1 6.8971 -9.1083 2.3317 42 1 7.9693 -7.2143 1.2171 43 1 6.3133 -6.7434 1.6826 44 1 5.6142 -2.7990 1.5902 45 1 5.9562 -1.3665 0.5273 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020985673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:23 Heat of formation + Delta-G solvation = -15.476138 kcal Electronic energy + Delta-G solvation = -24232.380391 eV Core-core repulsion = 20863.534607 eV Total energy + Delta-G solvation = -3368.845784 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.35340 -40.74027 -39.11642 -35.88407 -34.40424 -33.21355 -32.98644 -32.11655 -30.24908 -26.69294 -26.55796 -25.64894 -24.58518 -23.48353 -22.79890 -21.37125 -20.67729 -20.30841 -19.44949 -18.23352 -17.35570 -17.21048 -16.66070 -16.32281 -16.17885 -15.68060 -15.48437 -14.96642 -14.88252 -14.45308 -14.16036 -13.98697 -13.92573 -13.75148 -13.61667 -13.51632 -13.36816 -12.90376 -12.71058 -12.62768 -12.46706 -12.08174 -12.03929 -11.88039 -11.83791 -11.79431 -11.63299 -11.47941 -11.26879 -10.90636 -10.77725 -10.07083 -9.50973 -9.29501 -8.03565 -5.36866 1.37971 1.41298 1.48385 1.50946 2.07576 2.47897 2.94577 3.26527 3.43813 3.55052 3.60715 3.66351 3.69818 3.79311 3.96151 4.07912 4.11959 4.16614 4.21574 4.24968 4.38947 4.45381 4.57532 4.61745 4.68079 4.80627 4.85696 4.90011 4.90751 4.94737 4.96755 5.04912 5.09063 5.11097 5.13968 5.17010 5.20626 5.29584 5.62844 5.76055 5.76257 5.99467 6.21495 6.50665 7.06775 7.18361 7.83599 8.02025 9.17815 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.030366 B = 0.003168 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.856961 B = 8837.363838 C = 9160.127672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.954 3.046 4 H -0.282 1.282 5 H -0.297 1.297 6 H -0.247 1.247 7 C -0.234 4.234 8 H 0.059 0.941 9 N -0.742 5.742 10 C 0.156 3.844 11 H 0.080 0.920 12 C -0.174 4.174 13 C 0.131 3.869 14 H 0.094 0.906 15 N -0.695 5.695 16 C 0.539 3.461 17 O -0.579 6.579 18 C -0.115 4.115 19 C -0.134 4.134 20 C 0.031 3.969 21 N -0.506 5.506 22 C 0.058 3.942 23 C 0.029 3.971 24 C -0.149 4.149 25 C -0.101 4.101 26 C -0.141 4.141 27 H 0.257 0.743 28 H 0.367 0.633 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.412 0.588 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.926 -19.761 4.386 26.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.256 4.256 3 Si 0.781 3.219 4 H -0.208 1.208 5 H -0.224 1.224 6 H -0.172 1.172 7 C -0.365 4.365 8 H 0.077 0.923 9 N -0.383 5.383 10 C 0.047 3.953 11 H 0.098 0.902 12 C -0.216 4.216 13 C 0.025 3.975 14 H 0.112 0.888 15 N -0.345 5.345 16 C 0.326 3.674 17 O -0.459 6.459 18 C -0.120 4.120 19 C -0.173 4.173 20 C -0.097 4.097 21 N -0.226 5.226 22 C -0.071 4.071 23 C -0.099 4.099 24 C -0.188 4.188 25 C -0.139 4.139 26 C -0.181 4.181 27 H 0.066 0.934 28 H 0.201 0.799 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.248 0.752 32 H 0.116 0.884 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.108 0.892 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 17.467 -20.054 3.404 26.812 hybrid contribution -0.733 1.930 0.437 2.110 sum 16.734 -18.125 3.840 24.965 Atomic orbital electron populations 1.69885 1.07184 1.26678 1.59680 1.25523 0.96107 1.01316 1.02674 0.85425 0.78848 0.79649 0.77953 1.20842 1.22381 1.17168 1.19106 0.82777 0.93464 1.41169 0.92340 1.42751 1.02462 1.03941 1.89100 1.21934 0.90822 0.88169 0.94420 0.90201 1.24171 0.97594 1.00551 0.99292 1.21551 0.98536 0.80404 0.97037 0.88818 1.45619 1.40555 1.06259 1.42060 1.20414 0.79124 0.87812 0.80046 1.90676 1.39356 1.81543 1.34286 1.22565 0.99056 0.90390 0.99998 1.22961 0.94492 0.96995 1.02866 1.23106 0.88981 0.94862 1.02734 1.66419 1.07712 1.22844 1.25664 1.23268 0.97687 0.86789 0.99352 1.22711 1.00930 0.99696 0.86585 1.22228 1.02174 0.93410 1.00942 1.21822 1.02376 0.98231 0.91502 1.23703 0.95756 1.00012 0.98587 0.93376 0.79927 0.90260 0.92974 0.75169 0.88424 0.92233 0.88663 0.90486 0.91366 0.89889 0.89030 0.90452 0.90259 0.89329 0.91320 0.90076 0.89196 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.50 13.97 21.65 0.30 -62.20 16 2 C -0.06 -3.76 5.50 84.86 0.47 -3.30 16 3 Si 0.95 44.72 27.73 68.60 1.90 46.63 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.25 -10.27 6.52 99.48 0.65 -9.62 16 7 C -0.23 -13.00 10.45 84.03 0.88 -12.12 16 8 H 0.06 3.55 8.06 -2.91 -0.02 3.52 16 9 N -0.74 -33.04 5.20 -320.45 -1.67 -34.71 16 10 C 0.16 5.37 4.36 45.52 0.20 5.57 16 11 H 0.08 2.76 8.10 -2.39 -0.02 2.74 16 12 C -0.17 -5.60 7.68 31.12 0.24 -5.36 16 13 C 0.13 3.45 4.32 45.52 0.20 3.65 16 14 H 0.09 2.64 7.46 -2.39 -0.02 2.62 16 15 N -0.69 -15.59 5.25 -440.03 -2.31 -17.90 16 16 C 0.54 13.36 6.81 87.66 0.60 13.96 16 17 O -0.58 -19.17 15.78 -3.02 -0.05 -19.21 16 18 C -0.12 -2.07 0.96 -51.12 -0.05 -2.12 16 19 C -0.13 -2.11 5.49 31.63 0.17 -1.93 16 20 C 0.03 0.46 6.20 86.40 0.54 0.99 16 21 N -0.51 -8.34 6.07 -878.41 -5.33 -13.67 16 22 C 0.06 1.15 5.44 86.72 0.47 1.63 16 23 C 0.03 0.33 5.84 86.15 0.50 0.84 16 24 C -0.15 -1.43 5.52 30.64 0.17 -1.26 16 25 C -0.10 -1.31 5.03 30.99 0.16 -1.15 16 26 C -0.14 -3.66 7.58 31.12 0.24 -3.42 16 27 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 28 H 0.37 15.68 5.79 -92.71 -0.54 15.14 16 29 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.41 7.43 8.50 -92.72 -0.79 6.64 16 32 H 0.10 1.19 6.94 -2.39 -0.02 1.17 16 33 H 0.06 1.14 8.00 -2.39 -0.02 1.12 16 34 H 0.10 1.02 6.94 -2.38 -0.02 1.00 16 35 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.07 1.66 7.94 -2.39 -0.02 1.64 16 37 H 0.08 1.61 7.70 -2.39 -0.02 1.59 16 38 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 0.89 7.87 -2.39 -0.02 0.87 16 40 H 0.08 0.70 5.37 -2.39 -0.01 0.69 16 41 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.07 0.94 8.07 -2.39 -0.02 0.92 16 43 H 0.08 0.91 7.94 -2.38 -0.02 0.89 16 44 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.10 2.45 8.12 -2.39 -0.02 2.43 16 Total: -1.00 -71.00 345.87 -2.76 -73.76 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: -0.39 Total: 31.33 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 4.77 Total: -4.03 kcal Atomic # 7 Polarization: -119.47 SS G_CDS: -9.00 Total: -128.47 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.05 Total: -19.21 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.90 Total: 46.63 kcal Total: -71.00 -2.76 -73.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020985673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.284 kcal (2) G-P(sol) polarization free energy of solvation -70.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds