Wall clock time and date at job start Tue Mar 31 2020 07:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99640 * 2 1 4 4 H 1.48501 * 109.47298 * 271.91889 * 3 2 1 5 5 H 1.48503 * 109.47138 * 31.92599 * 3 2 1 6 6 H 1.48507 * 109.46888 * 151.92091 * 3 2 1 7 7 C 1.38810 * 120.00384 * 179.73213 * 2 1 3 8 8 H 1.08001 * 119.99754 * 343.67141 * 7 2 1 9 9 N 1.36932 * 120.00354 * 163.67542 * 7 2 1 10 10 C 1.47435 * 125.64565 * 324.66226 * 9 7 2 11 11 C 1.54907 * 104.82845 * 155.83427 * 10 9 7 12 12 C 1.55158 * 101.58319 * 37.01518 * 11 10 9 13 13 C 1.47017 * 125.65155 * 144.35919 * 9 7 2 14 14 H 1.08997 * 109.88559 * 300.51064 * 13 9 7 15 15 C 1.52998 * 109.88534 * 61.67885 * 13 9 7 16 16 N 1.46507 * 109.46791 * 298.38922 * 15 13 9 17 17 C 1.34777 * 120.00011 * 173.06011 * 16 15 13 18 18 O 1.21280 * 119.99863 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00093 * 179.97438 * 17 16 15 20 20 C 1.56241 * 116.69019 * 297.57276 * 19 17 16 21 21 C 1.55913 * 102.63655 * 199.97088 * 20 19 17 22 22 N 1.49516 * 105.39208 * 0.46851 * 21 20 19 23 23 C 1.49529 * 105.92316 * 287.97160 * 22 21 20 24 24 C 1.54658 * 105.28129 * 71.26509 * 23 22 21 25 25 C 1.50464 * 102.03646 * 34.37977 * 22 21 20 26 26 H 0.96998 * 120.00089 * 0.26745 * 1 2 3 27 27 H 1.08997 * 110.36781 * 274.67438 * 10 9 7 28 28 H 1.08998 * 110.36313 * 36.88848 * 10 9 7 29 29 H 1.09002 * 110.99768 * 155.08368 * 11 10 9 30 30 H 1.09000 * 111.00892 * 278.93526 * 11 10 9 31 31 H 1.08994 * 110.72273 * 82.85563 * 12 11 10 32 32 H 1.09005 * 110.72087 * 206.13541 * 12 11 10 33 33 H 1.08997 * 109.47156 * 58.38242 * 15 13 9 34 34 H 1.09000 * 109.47267 * 178.39035 * 15 13 9 35 35 H 0.96994 * 120.00053 * 353.06086 * 16 15 13 36 36 H 1.09000 * 110.66384 * 319.47421 * 20 19 17 37 37 H 1.09001 * 110.67167 * 82.61075 * 20 19 17 38 38 H 1.09006 * 110.87384 * 241.14106 * 21 20 19 39 39 H 1.08991 * 109.58367 * 119.12303 * 21 20 19 40 40 H 1.09003 * 110.27986 * 190.21589 * 23 22 21 41 41 H 1.09002 * 110.28122 * 312.30851 * 23 22 21 42 42 H 1.09003 * 110.66214 * 242.22276 * 24 23 22 43 43 H 1.08997 * 110.67201 * 119.08953 * 24 23 22 44 44 H 1.08996 * 111.90963 * 188.39779 * 25 22 21 45 45 H 1.09006 * 111.96862 * 62.21540 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4570 2.0699 -1.3993 5 1 1.4684 2.6406 0.7404 6 1 3.5674 1.4288 0.6590 7 6 2.0103 -1.2021 0.0056 8 1 1.5030 -2.1173 0.2729 9 7 3.3382 -1.2275 -0.3276 10 6 3.9857 -0.3772 -1.3431 11 6 5.4755 -0.3216 -0.9223 12 6 5.7045 -1.7630 -0.3957 13 6 4.3556 -2.1029 0.2725 14 1 4.4151 -1.9209 1.3455 15 6 4.0023 -3.5681 0.0091 16 7 2.7139 -3.8794 0.6332 17 6 2.1311 -5.0751 0.4156 18 8 2.6731 -5.8930 -0.2972 19 6 0.8062 -5.3956 1.0579 20 6 0.7731 -5.4284 2.6197 21 6 -0.5076 -6.2667 2.9161 22 7 -1.0614 -6.6327 1.5764 23 6 -1.6300 -5.3714 1.0091 24 6 -0.4056 -4.4961 0.6534 25 6 0.1887 -6.8091 0.7577 26 1 -0.4850 0.8400 -0.0039 27 1 3.8872 -0.8252 -2.3318 28 1 3.5500 0.6219 -1.3350 29 1 6.1159 -0.1124 -1.7792 30 1 5.6311 0.4125 -0.1317 31 1 5.9139 -2.4457 -1.2192 32 1 6.5110 -1.7822 0.3373 33 1 3.9360 -3.7383 -1.0655 34 1 4.7753 -4.2099 0.4318 35 1 2.2802 -3.2251 1.2029 36 1 1.6706 -5.9053 3.0135 37 1 0.6621 -4.4220 3.0234 38 1 -1.2345 -5.6800 3.4780 39 1 -0.2361 -7.1648 3.4708 40 1 -2.2121 -5.5888 0.1135 41 1 -2.2507 -4.8695 1.7514 42 1 -0.4107 -3.5735 1.2339 43 1 -0.3846 -4.2797 -0.4147 44 1 -0.0337 -6.9393 -0.3013 45 1 0.8151 -7.6158 1.1386 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028263533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:34 Heat of formation + Delta-G solvation = 18.549425 kcal Electronic energy + Delta-G solvation = -25228.896226 eV Core-core repulsion = 21861.525901 eV Total energy + Delta-G solvation = -3367.370325 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.85917 -38.79882 -37.69479 -34.01292 -32.73211 -30.85303 -30.48513 -30.04117 -29.06709 -27.88551 -25.11691 -23.94994 -22.36257 -21.83723 -20.81777 -20.46905 -19.79011 -18.72488 -17.25463 -16.34983 -16.09883 -15.90836 -15.50485 -15.15034 -14.76561 -14.35896 -14.05824 -13.52447 -13.13476 -13.04796 -12.65032 -12.58001 -12.39783 -12.36559 -11.99155 -11.97206 -11.59080 -11.39781 -11.34037 -11.31107 -11.09815 -10.96725 -10.78137 -10.54692 -10.41631 -10.25167 -10.10262 -9.88910 -9.59797 -9.31222 -8.96019 -8.67003 -8.38406 -6.92338 -6.09731 -3.54627 3.03403 3.24045 3.38213 3.42616 3.68641 3.97717 4.42092 4.62633 4.69656 4.86472 4.97121 5.07614 5.14601 5.22539 5.27123 5.29413 5.39194 5.40573 5.47589 5.62470 5.70483 5.77908 5.82573 5.87789 5.89439 5.92210 6.02541 6.05876 6.06996 6.08697 6.20921 6.24357 6.29322 6.34280 6.38036 6.52106 6.61261 6.75228 6.79446 6.81020 7.03819 7.78010 8.11073 8.21477 8.68204 8.75778 9.54397 10.13767 11.04048 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017655 B = 0.005608 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.532664 B = 4991.703551 C = 6129.605760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.035 3.965 3 Si 0.892 3.108 4 H -0.287 1.287 5 H -0.305 1.305 6 H -0.270 1.270 7 C -0.258 4.258 8 H 0.094 0.906 9 N -0.601 5.601 10 C 0.116 3.884 11 C -0.136 4.136 12 C -0.121 4.121 13 C 0.143 3.857 14 H 0.047 0.953 15 C 0.116 3.884 16 N -0.702 5.702 17 C 0.547 3.453 18 O -0.558 6.558 19 C -0.127 4.127 20 C -0.135 4.135 21 C 0.014 3.986 22 N -0.469 5.469 23 C 0.014 3.986 24 C -0.130 4.130 25 C 0.040 3.960 26 H 0.264 0.736 27 H 0.031 0.969 28 H 0.041 0.959 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.413 0.587 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.835 -7.154 4.313 9.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.166 4.166 3 Si 0.724 3.276 4 H -0.216 1.216 5 H -0.233 1.233 6 H -0.195 1.195 7 C -0.386 4.386 8 H 0.111 0.889 9 N -0.328 5.328 10 C -0.008 4.008 11 C -0.174 4.174 12 C -0.160 4.160 13 C 0.036 3.964 14 H 0.065 0.935 15 C -0.010 4.010 16 N -0.354 5.354 17 C 0.332 3.668 18 O -0.437 6.437 19 C -0.132 4.132 20 C -0.174 4.174 21 C -0.115 4.115 22 N -0.189 5.189 23 C -0.115 4.115 24 C -0.169 4.169 25 C -0.089 4.089 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.253 0.747 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.107 0.893 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.439 -8.190 3.889 9.697 hybrid contribution 0.765 2.249 0.133 2.380 sum 4.203 -5.940 4.023 8.315 Atomic orbital electron populations 1.69773 1.05674 1.26860 1.51907 1.25414 0.95210 0.97916 0.98099 0.86697 0.79859 0.84020 0.77025 1.21554 1.23291 1.19534 1.18703 0.81803 0.94009 1.44068 0.88930 1.44682 1.04766 1.43600 1.39712 1.21910 0.90784 0.95196 0.92909 1.22778 0.97524 0.96702 1.00426 1.22493 0.96429 0.96971 1.00064 1.21279 0.89012 0.89445 0.96656 0.93476 1.21928 0.84004 0.96922 0.98169 1.46248 1.22713 1.16233 1.50241 1.19380 0.84839 0.81941 0.80662 1.90637 1.65180 1.48630 1.39237 1.23726 0.94063 0.98897 0.96547 1.23405 0.99098 1.01753 0.93170 1.23794 0.95163 0.99223 0.93310 1.69978 1.18813 1.27809 1.02330 1.23602 0.97099 0.89976 1.00792 1.23163 0.91948 0.98390 1.03421 1.24290 0.90349 0.94782 0.99517 0.92570 0.95097 0.94087 0.91535 0.91608 0.91215 0.91422 0.91734 0.92995 0.74699 0.90930 0.90323 0.90241 0.90186 0.89918 0.90347 0.89430 0.90418 0.89260 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.49 13.97 55.49 0.78 -24.71 16 2 C 0.03 0.93 5.46 -17.43 -0.10 0.84 16 3 Si 0.89 21.53 24.79 -169.99 -4.21 17.31 16 4 H -0.29 -6.91 6.77 56.52 0.38 -6.53 16 5 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.27 -6.34 7.06 56.52 0.40 -5.94 16 7 C -0.26 -6.52 9.49 -15.06 -0.14 -6.66 16 8 H 0.09 2.37 5.33 -52.49 -0.28 2.09 16 9 N -0.60 -13.24 2.69 -162.58 -0.44 -13.68 16 10 C 0.12 2.39 6.23 -2.52 -0.02 2.38 16 11 C -0.14 -2.21 7.08 -24.58 -0.17 -2.38 16 12 C -0.12 -1.81 6.47 -24.90 -0.16 -1.97 16 13 C 0.14 2.59 3.34 -66.96 -0.22 2.36 16 14 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 15 C 0.12 2.06 5.19 -4.04 -0.02 2.04 16 16 N -0.70 -12.87 4.36 -60.29 -0.26 -13.13 16 17 C 0.55 10.10 7.29 -10.99 -0.08 10.02 16 18 O -0.56 -11.79 16.54 5.56 0.09 -11.70 16 19 C -0.13 -1.97 1.37 -149.93 -0.20 -2.18 16 20 C -0.14 -1.75 6.13 -23.44 -0.14 -1.90 16 21 C 0.01 0.17 6.64 -0.81 -0.01 0.16 16 22 N -0.47 -6.35 6.94 -221.23 -1.54 -7.89 16 23 C 0.01 0.19 6.61 -1.48 -0.01 0.18 16 24 C -0.13 -2.08 6.04 -24.12 -0.15 -2.22 16 25 C 0.04 0.58 6.05 0.43 0.00 0.58 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.92 3.02 -51.93 -0.16 0.77 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 0.97 7.86 -51.93 -0.41 0.56 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 1.27 8.11 -51.93 -0.42 0.85 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.41 7.79 6.05 -40.82 -0.25 7.55 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.02 7.86 -51.93 -0.41 0.61 16 38 H 0.08 0.87 7.69 -51.93 -0.40 0.47 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.08 0.99 7.69 -51.93 -0.40 0.59 16 42 H 0.09 1.51 7.86 -51.93 -0.41 1.10 16 43 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 341.11 15.07 5.14 5.14 Total: -1.00 -29.35 341.11 -9.22 -38.57 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -7.36 Total: 8.82 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -1.42 Total: 1.26 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -1.46 Total: -59.41 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.21 Total: 17.31 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.35 -9.22 -38.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028263533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.124 kcal (2) G-P(sol) polarization free energy of solvation -29.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds