Wall clock time and date at job start Tue Mar 31 2020 07:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99640 * 2 1 4 4 H 1.48501 * 109.47298 * 271.91889 * 3 2 1 5 5 H 1.48503 * 109.47138 * 31.92599 * 3 2 1 6 6 H 1.48507 * 109.46888 * 151.92091 * 3 2 1 7 7 C 1.38810 * 120.00384 * 179.73213 * 2 1 3 8 8 H 1.08001 * 119.99754 * 343.67141 * 7 2 1 9 9 N 1.36932 * 120.00354 * 163.67542 * 7 2 1 10 10 C 1.47435 * 125.64565 * 324.66226 * 9 7 2 11 11 C 1.54907 * 104.82845 * 155.83427 * 10 9 7 12 12 C 1.55158 * 101.58319 * 37.01518 * 11 10 9 13 13 C 1.47017 * 125.65155 * 144.35919 * 9 7 2 14 14 H 1.08997 * 109.88559 * 300.51064 * 13 9 7 15 15 C 1.52998 * 109.88534 * 61.67885 * 13 9 7 16 16 N 1.46507 * 109.46791 * 298.38922 * 15 13 9 17 17 C 1.34777 * 120.00011 * 173.06011 * 16 15 13 18 18 O 1.21280 * 119.99863 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00093 * 179.97438 * 17 16 15 20 20 C 1.56241 * 116.69019 * 297.57276 * 19 17 16 21 21 C 1.55913 * 102.63655 * 199.97088 * 20 19 17 22 22 N 1.49516 * 105.39208 * 0.46851 * 21 20 19 23 23 C 1.49529 * 105.92316 * 287.97160 * 22 21 20 24 24 C 1.54658 * 105.28129 * 71.26509 * 23 22 21 25 25 C 1.50464 * 102.03646 * 34.37977 * 22 21 20 26 26 H 0.96998 * 120.00089 * 0.26745 * 1 2 3 27 27 H 1.08997 * 110.36781 * 274.67438 * 10 9 7 28 28 H 1.08998 * 110.36313 * 36.88848 * 10 9 7 29 29 H 1.09002 * 110.99768 * 155.08368 * 11 10 9 30 30 H 1.09000 * 111.00892 * 278.93526 * 11 10 9 31 31 H 1.08994 * 110.72273 * 82.85563 * 12 11 10 32 32 H 1.09005 * 110.72087 * 206.13541 * 12 11 10 33 33 H 1.08997 * 109.47156 * 58.38242 * 15 13 9 34 34 H 1.09000 * 109.47267 * 178.39035 * 15 13 9 35 35 H 0.96994 * 120.00053 * 353.06086 * 16 15 13 36 36 H 1.09000 * 110.66384 * 319.47421 * 20 19 17 37 37 H 1.09001 * 110.67167 * 82.61075 * 20 19 17 38 38 H 1.09006 * 110.87384 * 241.14106 * 21 20 19 39 39 H 1.08991 * 109.58367 * 119.12303 * 21 20 19 40 40 H 1.09003 * 110.27986 * 190.21589 * 23 22 21 41 41 H 1.09002 * 110.28122 * 312.30851 * 23 22 21 42 42 H 1.09003 * 110.66214 * 242.22276 * 24 23 22 43 43 H 1.08997 * 110.67201 * 119.08953 * 24 23 22 44 44 H 1.08996 * 111.90963 * 188.39779 * 25 22 21 45 45 H 1.09006 * 111.96862 * 62.21540 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4570 2.0699 -1.3993 5 1 1.4684 2.6406 0.7404 6 1 3.5674 1.4288 0.6590 7 6 2.0103 -1.2021 0.0056 8 1 1.5030 -2.1173 0.2729 9 7 3.3382 -1.2275 -0.3276 10 6 3.9857 -0.3772 -1.3431 11 6 5.4755 -0.3216 -0.9223 12 6 5.7045 -1.7630 -0.3957 13 6 4.3556 -2.1029 0.2725 14 1 4.4151 -1.9209 1.3455 15 6 4.0023 -3.5681 0.0091 16 7 2.7139 -3.8794 0.6332 17 6 2.1311 -5.0751 0.4156 18 8 2.6731 -5.8930 -0.2972 19 6 0.8062 -5.3956 1.0579 20 6 0.7731 -5.4284 2.6197 21 6 -0.5076 -6.2667 2.9161 22 7 -1.0614 -6.6327 1.5764 23 6 -1.6300 -5.3714 1.0091 24 6 -0.4056 -4.4961 0.6534 25 6 0.1887 -6.8091 0.7577 26 1 -0.4850 0.8400 -0.0039 27 1 3.8872 -0.8252 -2.3318 28 1 3.5500 0.6219 -1.3350 29 1 6.1159 -0.1124 -1.7792 30 1 5.6311 0.4125 -0.1317 31 1 5.9139 -2.4457 -1.2192 32 1 6.5110 -1.7822 0.3373 33 1 3.9360 -3.7383 -1.0655 34 1 4.7753 -4.2099 0.4318 35 1 2.2802 -3.2251 1.2029 36 1 1.6706 -5.9053 3.0135 37 1 0.6621 -4.4220 3.0234 38 1 -1.2345 -5.6800 3.4780 39 1 -0.2361 -7.1648 3.4708 40 1 -2.2121 -5.5888 0.1135 41 1 -2.2507 -4.8695 1.7514 42 1 -0.4107 -3.5735 1.2339 43 1 -0.3846 -4.2797 -0.4147 44 1 -0.0337 -6.9393 -0.3013 45 1 0.8151 -7.6158 1.1386 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028263533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:33 Heat of formation + Delta-G solvation = -2.867231 kcal Electronic energy + Delta-G solvation = -25229.824921 eV Core-core repulsion = 21861.525901 eV Total energy + Delta-G solvation = -3368.299020 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.08721 -40.25736 -39.20695 -35.53021 -34.62744 -32.12999 -31.76964 -31.60706 -30.47159 -29.03771 -26.67282 -25.65431 -23.48106 -23.29223 -22.14769 -21.69169 -21.31186 -20.17256 -18.89417 -17.96286 -17.60917 -17.10087 -17.00146 -16.40932 -16.27996 -15.82077 -15.46415 -15.16899 -14.83458 -14.27735 -14.21443 -13.89606 -13.78521 -13.72854 -13.57885 -13.13653 -13.05684 -12.96399 -12.73505 -12.60953 -12.42382 -12.29536 -12.25086 -12.08665 -11.72750 -11.61438 -11.53920 -11.37086 -11.26180 -10.79740 -10.65910 -10.08571 -9.93237 -8.75082 -8.14305 -5.55022 1.30297 1.40021 1.50068 1.56284 2.28088 2.44804 2.82540 3.07790 3.34854 3.45676 3.49974 3.79471 3.89898 3.94616 3.99552 4.04339 4.12374 4.15953 4.30181 4.30512 4.46105 4.47010 4.52765 4.63869 4.68781 4.72867 4.80134 4.84058 4.85701 4.91587 4.95998 4.97682 4.98897 5.03651 5.12988 5.13451 5.29983 5.46781 5.47049 5.55471 5.65177 5.89806 6.22133 6.60208 6.82913 7.24312 7.56941 8.23308 9.02046 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017655 B = 0.005608 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.532664 B = 4991.703551 C = 6129.605760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.021 4.021 3 Si 0.944 3.056 4 H -0.290 1.290 5 H -0.316 1.316 6 H -0.257 1.257 7 C -0.240 4.240 8 H 0.082 0.918 9 N -0.618 5.618 10 C 0.103 3.897 11 C -0.126 4.126 12 C -0.110 4.110 13 C 0.140 3.860 14 H 0.051 0.949 15 C 0.119 3.881 16 N -0.703 5.703 17 C 0.543 3.457 18 O -0.587 6.587 19 C -0.133 4.133 20 C -0.127 4.127 21 C 0.017 3.983 22 N -0.467 5.467 23 C 0.020 3.980 24 C -0.125 4.125 25 C 0.043 3.957 26 H 0.260 0.740 27 H 0.027 0.973 28 H 0.022 0.978 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.410 0.590 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.069 0.931 43 H 0.047 0.953 44 H 0.077 0.923 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.785 -7.825 5.480 11.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.217 4.217 3 Si 0.776 3.224 4 H -0.219 1.219 5 H -0.246 1.246 6 H -0.181 1.181 7 C -0.369 4.369 8 H 0.099 0.901 9 N -0.344 5.344 10 C -0.021 4.021 11 C -0.164 4.164 12 C -0.149 4.149 13 C 0.034 3.966 14 H 0.069 0.931 15 C -0.007 4.007 16 N -0.354 5.354 17 C 0.329 3.671 18 O -0.469 6.469 19 C -0.137 4.137 20 C -0.166 4.166 21 C -0.112 4.112 22 N -0.186 5.186 23 C -0.108 4.108 24 C -0.164 4.164 25 C -0.086 4.086 26 H 0.069 0.931 27 H 0.044 0.956 28 H 0.040 0.960 29 H 0.116 0.884 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.120 0.880 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.249 0.751 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.096 0.904 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.438 -8.866 5.062 11.567 hybrid contribution 0.190 2.383 -0.283 2.407 sum 5.628 -6.484 4.778 9.826 Atomic orbital electron populations 1.69890 1.06959 1.26959 1.54984 1.25954 0.95716 1.00613 0.99452 0.85841 0.79093 0.80819 0.76609 1.21854 1.24575 1.18097 1.18831 0.83460 0.93407 1.41214 0.90120 1.44862 1.04510 1.44381 1.40668 1.22075 0.93796 0.93669 0.92565 1.22748 0.94425 0.97555 1.01649 1.22525 0.95150 0.96132 1.01049 1.21495 0.89775 0.88358 0.97001 0.93086 1.21920 0.84387 0.97393 0.96953 1.46319 1.23008 1.16112 1.49994 1.19853 0.85573 0.81507 0.80177 1.90611 1.66270 1.49430 1.40559 1.23697 0.92206 0.99329 0.98515 1.23394 1.00349 1.02211 0.90664 1.23899 0.94672 1.00087 0.92522 1.69987 1.18209 1.27427 1.03008 1.23589 0.96044 0.89702 1.01509 1.23043 0.93871 0.98379 1.01107 1.24252 0.90831 0.94274 0.99242 0.93130 0.95553 0.96036 0.88401 0.91608 0.89971 0.88039 0.93900 0.90725 0.75067 0.89945 0.90438 0.88823 0.88219 0.89607 0.88871 0.91186 0.93429 0.90434 0.88616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.27 13.97 21.65 0.30 -54.96 16 2 C -0.02 -1.13 5.46 84.86 0.46 -0.67 16 3 Si 0.94 45.04 24.79 68.60 1.70 46.74 16 4 H -0.29 -13.77 6.77 99.48 0.67 -13.10 16 5 H -0.32 -15.51 7.11 99.48 0.71 -14.81 16 6 H -0.26 -11.46 7.06 99.48 0.70 -10.76 16 7 C -0.24 -12.29 9.49 84.03 0.80 -11.49 16 8 H 0.08 4.26 5.33 -2.91 -0.02 4.25 16 9 N -0.62 -26.74 2.69 -668.28 -1.80 -28.54 16 10 C 0.10 4.09 6.23 86.85 0.54 4.63 16 11 C -0.13 -3.63 7.08 31.99 0.23 -3.40 16 12 C -0.11 -2.85 6.47 31.78 0.21 -2.65 16 13 C 0.14 4.76 3.34 45.34 0.15 4.92 16 14 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 15 C 0.12 4.11 5.19 86.38 0.45 4.56 16 16 N -0.70 -25.79 4.36 -463.06 -2.02 -27.81 16 17 C 0.54 20.19 7.29 87.66 0.64 20.83 16 18 O -0.59 -24.97 16.54 -3.03 -0.05 -25.02 16 19 C -0.13 -4.10 1.37 -49.22 -0.07 -4.17 16 20 C -0.13 -3.11 6.13 32.73 0.20 -2.91 16 21 C 0.02 0.36 6.64 86.80 0.58 0.93 16 22 N -0.47 -11.87 6.94 -853.84 -5.93 -17.79 16 23 C 0.02 0.54 6.61 86.36 0.57 1.11 16 24 C -0.12 -4.11 6.04 32.29 0.20 -3.91 16 25 C 0.04 1.24 6.05 87.06 0.53 1.76 16 26 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 27 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.02 0.95 3.02 -2.39 -0.01 0.94 16 29 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.08 1.96 7.86 -2.39 -0.02 1.94 16 32 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.04 1.67 8.11 -2.39 -0.02 1.65 16 34 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.41 15.64 6.05 -92.71 -0.56 15.08 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.08 1.92 7.86 -2.39 -0.02 1.90 16 38 H 0.09 1.77 7.69 -2.38 -0.02 1.75 16 39 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.09 2.23 7.69 -2.39 -0.02 2.21 16 42 H 0.07 2.53 7.86 -2.39 -0.02 2.51 16 43 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 Total: -1.00 -64.72 341.11 -1.93 -66.66 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: 0.38 Total: 31.18 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 5.47 Total: 9.54 kcal Atomic # 7 Polarization: -119.66 SS G_CDS: -9.44 Total: -129.10 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.05 Total: -25.02 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.70 Total: 46.74 kcal Total: -64.72 -1.93 -66.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028263533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.791 kcal (2) G-P(sol) polarization free energy of solvation -64.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds