Wall clock time and date at job start Tue Mar 31 2020 07:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47316 * 87.04370 * 3 2 1 5 5 H 1.48505 * 109.47077 * 327.04455 * 3 2 1 6 6 H 1.48508 * 109.47266 * 207.04640 * 3 2 1 7 7 C 1.38809 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00089 * 13.33964 * 7 2 1 9 9 N 1.36936 * 120.00107 * 193.33185 * 7 2 1 10 10 C 1.47433 * 125.64811 * 38.72367 * 9 7 2 11 11 C 1.54900 * 104.83335 * 204.09008 * 10 9 7 12 12 C 1.55160 * 101.58140 * 322.98582 * 11 10 9 13 13 C 1.47023 * 125.65413 * 218.40812 * 9 7 2 14 14 H 1.09004 * 109.87702 * 59.56037 * 13 9 7 15 15 C 1.53001 * 109.88005 * 298.40005 * 13 9 7 16 16 N 1.46498 * 109.47268 * 61.79108 * 15 13 9 17 17 C 1.34783 * 120.00101 * 186.20438 * 16 15 13 18 18 O 1.21282 * 119.99561 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99910 * 179.97438 * 17 16 15 20 20 C 1.56246 * 116.69187 * 297.57156 * 19 17 16 21 21 C 1.55906 * 102.63552 * 199.97117 * 20 19 17 22 22 N 1.49517 * 105.39526 * 0.47100 * 21 20 19 23 23 C 1.49514 * 105.92644 * 287.97152 * 22 21 20 24 24 C 1.54661 * 105.28727 * 71.25846 * 23 22 21 25 25 C 1.50464 * 102.03514 * 34.38212 * 22 21 20 26 26 H 0.97004 * 119.99861 * 0.02562 * 1 2 3 27 27 H 1.09000 * 110.36264 * 322.92418 * 10 9 7 28 28 H 1.08998 * 110.36767 * 85.24659 * 10 9 7 29 29 H 1.09002 * 111.00513 * 81.05858 * 11 10 9 30 30 H 1.08997 * 111.00830 * 204.87682 * 11 10 9 31 31 H 1.09004 * 110.72319 * 153.86388 * 12 11 10 32 32 H 1.08996 * 110.72288 * 277.13747 * 12 11 10 33 33 H 1.09007 * 109.46880 * 181.78550 * 15 13 9 34 34 H 1.08997 * 109.47424 * 301.78682 * 15 13 9 35 35 H 0.97005 * 120.00230 * 6.19895 * 16 15 13 36 36 H 1.09003 * 110.66889 * 319.48104 * 20 19 17 37 37 H 1.09004 * 110.66673 * 82.61718 * 20 19 17 38 38 H 1.09005 * 110.87762 * 241.14418 * 21 20 19 39 39 H 1.09002 * 109.65835 * 119.17012 * 21 20 19 40 40 H 1.09003 * 110.28729 * 190.21214 * 23 22 21 41 41 H 1.08995 * 110.28178 * 312.21564 * 23 22 21 42 42 H 1.08992 * 110.67062 * 242.22931 * 24 23 22 43 43 H 1.09000 * 110.66769 * 119.08705 * 24 23 22 44 44 H 1.08993 * 111.91550 * 188.40025 * 25 22 21 45 45 H 1.09004 * 111.97018 * 62.20836 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4352 2.0825 1.3982 5 1 1.4803 2.6338 -0.7616 6 1 3.5777 1.4229 -0.6367 7 6 2.0102 -1.2021 0.0005 8 1 1.4921 -2.1249 -0.2148 9 7 3.3519 -1.2180 0.2740 10 6 4.0332 -0.3856 1.2823 11 6 5.5024 -0.3002 0.7988 12 6 5.7250 -1.7247 0.2254 13 6 4.3507 -2.0726 -0.3846 14 1 4.3612 -1.8722 -1.4560 15 6 4.0235 -3.5455 -0.1310 16 7 2.7142 -3.8612 -0.7072 17 6 2.1599 -5.0718 -0.4979 18 8 2.7451 -5.8996 0.1679 19 6 0.8127 -5.3963 -1.0902 20 6 -0.3936 -4.5284 -0.6077 21 6 -1.6208 -5.4199 -0.9679 22 7 -1.0466 -6.6574 -1.5797 23 6 -0.5406 -6.2521 -2.9270 24 6 0.7110 -5.3870 -2.6493 25 6 0.2308 -6.8276 -0.8031 26 1 -0.4850 0.8401 -0.0004 27 1 3.5872 0.6083 1.3177 28 1 3.9833 -0.8599 2.2623 29 1 5.6146 0.4557 0.0216 30 1 6.1771 -0.1040 1.6320 31 1 6.4988 -1.7149 -0.5422 32 1 5.9783 -2.4254 1.0209 33 1 4.7853 -4.1720 -0.5951 34 1 4.0030 -3.7336 0.9425 35 1 2.2460 -3.1989 -1.2393 36 1 -0.3284 -4.3410 0.4641 37 1 -0.4384 -3.5904 -1.1613 38 1 -2.2729 -4.9139 -1.6799 39 1 -2.1727 -5.6677 -0.0611 40 1 -0.2695 -7.1327 -3.5094 41 1 -1.2954 -5.6688 -3.4543 42 1 0.5668 -4.3719 -3.0193 43 1 1.5972 -5.8381 -3.0954 44 1 0.8595 -7.6137 -1.2213 45 1 0.0443 -6.9852 0.2593 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028263534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:36 Heat of formation + Delta-G solvation = 16.924307 kcal Electronic energy + Delta-G solvation = -25223.444226 eV Core-core repulsion = 21856.003431 eV Total energy + Delta-G solvation = -3367.440795 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.85969 -38.79288 -37.68942 -34.00652 -32.73133 -30.85002 -30.49251 -30.04275 -29.06267 -27.88245 -25.11638 -23.94744 -22.36251 -21.82811 -20.80357 -20.46754 -19.77960 -18.72453 -17.25969 -16.34534 -16.10527 -15.91015 -15.50520 -15.15118 -14.74873 -14.36389 -14.05724 -13.51101 -13.13355 -13.04501 -12.65405 -12.58610 -12.38966 -12.36552 -12.00072 -11.97461 -11.59081 -11.38203 -11.32390 -11.30778 -11.09921 -10.96420 -10.78230 -10.55457 -10.41439 -10.22979 -10.10613 -9.90044 -9.61454 -9.31370 -8.96091 -8.68861 -8.38280 -6.87443 -6.09966 -3.59589 3.03312 3.24071 3.37765 3.42414 3.68795 3.97729 4.41634 4.63369 4.68983 4.87986 4.97331 5.06987 5.17849 5.22504 5.24362 5.30049 5.38903 5.39922 5.48536 5.62399 5.69707 5.78624 5.83253 5.87673 5.90270 5.92400 6.02396 6.06263 6.07281 6.08758 6.21779 6.24458 6.29391 6.34681 6.37898 6.52190 6.60697 6.74969 6.79526 6.81448 7.04380 7.81943 8.11860 8.21926 8.68309 8.75682 9.53572 10.14436 11.03257 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017703 B = 0.005593 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.235770 B = 5004.639695 C = 6139.037937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.037 3.963 3 Si 0.894 3.106 4 H -0.288 1.288 5 H -0.304 1.304 6 H -0.268 1.268 7 C -0.260 4.260 8 H 0.092 0.908 9 N -0.602 5.602 10 C 0.117 3.883 11 C -0.136 4.136 12 C -0.121 4.121 13 C 0.143 3.857 14 H 0.048 0.952 15 C 0.116 3.884 16 N -0.702 5.702 17 C 0.547 3.453 18 O -0.558 6.558 19 C -0.127 4.127 20 C -0.130 4.130 21 C 0.014 3.986 22 N -0.469 5.469 23 C 0.014 3.986 24 C -0.135 4.135 25 C 0.040 3.960 26 H 0.265 0.735 27 H 0.040 0.960 28 H 0.030 0.970 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.414 0.586 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.690 -7.018 -4.389 9.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.165 4.165 3 Si 0.726 3.274 4 H -0.216 1.216 5 H -0.233 1.233 6 H -0.193 1.193 7 C -0.388 4.388 8 H 0.109 0.891 9 N -0.328 5.328 10 C -0.008 4.008 11 C -0.174 4.174 12 C -0.160 4.160 13 C 0.036 3.964 14 H 0.065 0.935 15 C -0.010 4.010 16 N -0.354 5.354 17 C 0.331 3.669 18 O -0.437 6.437 19 C -0.132 4.132 20 C -0.169 4.169 21 C -0.115 4.115 22 N -0.189 5.189 23 C -0.115 4.115 24 C -0.174 4.174 25 C -0.089 4.089 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.254 0.746 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.334 -8.064 -3.990 9.595 hybrid contribution 0.725 2.242 -0.100 2.359 sum 4.059 -5.822 -4.089 8.191 Atomic orbital electron populations 1.69758 1.05710 1.26896 1.51915 1.25492 0.95218 0.98089 0.97671 0.86645 0.79917 0.83787 0.77053 1.21579 1.23284 1.19321 1.18689 0.80630 0.93744 1.45693 0.89061 1.44657 1.03746 1.45735 1.38656 1.21902 0.90694 0.95240 0.92916 1.22775 0.97584 0.96813 1.00252 1.22490 0.96302 0.97045 1.00121 1.21280 0.89148 0.89480 0.96466 0.93465 1.21915 0.83562 0.96941 0.98593 1.46249 1.21123 1.14862 1.53191 1.19386 0.85318 0.82094 0.80057 1.90637 1.63777 1.48575 1.40727 1.23729 0.93897 0.98954 0.96644 1.23382 0.91923 0.98609 1.02960 1.23819 0.97031 0.90249 1.00428 1.69974 1.18161 1.28502 1.02289 1.23571 0.95812 0.98835 0.93264 1.23187 0.99300 1.01649 0.93305 1.24292 0.90168 0.94585 0.99896 0.92551 0.94179 0.95165 0.91585 0.91562 0.91406 0.91303 0.92990 0.91799 0.74623 0.90308 0.89474 0.90259 0.90034 0.90079 0.90338 0.90187 0.91100 0.89477 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.46 13.97 55.49 0.78 -24.69 16 2 C 0.04 0.98 5.48 -17.43 -0.10 0.89 16 3 Si 0.89 21.51 24.76 -169.99 -4.21 17.30 16 4 H -0.29 -6.92 6.86 56.52 0.39 -6.53 16 5 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.27 -6.24 6.77 56.52 0.38 -5.86 16 7 C -0.26 -6.55 9.42 -15.06 -0.14 -6.69 16 8 H 0.09 2.34 5.44 -52.49 -0.29 2.06 16 9 N -0.60 -13.23 2.65 -162.57 -0.43 -13.66 16 10 C 0.12 2.39 6.15 -2.53 -0.02 2.38 16 11 C -0.14 -2.21 7.09 -24.59 -0.17 -2.39 16 12 C -0.12 -1.81 6.49 -24.89 -0.16 -1.97 16 13 C 0.14 2.60 3.34 -66.95 -0.22 2.37 16 14 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 15 C 0.12 2.07 5.18 -4.04 -0.02 2.05 16 16 N -0.70 -12.89 4.36 -60.29 -0.26 -13.15 16 17 C 0.55 10.10 7.29 -10.98 -0.08 10.02 16 18 O -0.56 -11.79 16.55 5.56 0.09 -11.70 16 19 C -0.13 -1.97 1.37 -149.92 -0.20 -2.18 16 20 C -0.13 -2.06 6.13 -23.44 -0.14 -2.21 16 21 C 0.01 0.18 6.64 -0.81 -0.01 0.18 16 22 N -0.47 -6.34 6.94 -221.24 -1.54 -7.88 16 23 C 0.01 0.17 6.61 -1.49 -0.01 0.16 16 24 C -0.14 -1.76 6.05 -24.12 -0.15 -1.91 16 25 C 0.04 0.58 6.05 0.43 0.00 0.58 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.04 0.90 3.20 -51.93 -0.17 0.73 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 1.10 7.95 -51.93 -0.41 0.69 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.96 7.84 -51.93 -0.41 0.55 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.06 1.26 8.12 -51.93 -0.42 0.84 16 35 H 0.41 7.85 6.07 -40.82 -0.25 7.60 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 37 H 0.09 1.51 7.86 -51.93 -0.41 1.10 16 38 H 0.08 1.00 7.69 -51.93 -0.40 0.60 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.08 0.86 7.69 -51.93 -0.40 0.46 16 42 H 0.08 1.04 7.86 -51.93 -0.41 0.63 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 340.85 15.07 5.14 5.14 Total: -1.00 -29.25 340.85 -9.23 -38.48 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -7.38 Total: 8.89 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -1.42 Total: 1.28 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -1.45 Total: -59.38 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.21 Total: 17.30 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.25 -9.23 -38.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028263534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.404 kcal (2) G-P(sol) polarization free energy of solvation -29.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds