Wall clock time and date at job start Tue Mar 31 2020 07:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47316 * 87.04370 * 3 2 1 5 5 H 1.48505 * 109.47077 * 327.04455 * 3 2 1 6 6 H 1.48508 * 109.47266 * 207.04640 * 3 2 1 7 7 C 1.38809 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00089 * 13.33964 * 7 2 1 9 9 N 1.36936 * 120.00107 * 193.33185 * 7 2 1 10 10 C 1.47433 * 125.64811 * 38.72367 * 9 7 2 11 11 C 1.54900 * 104.83335 * 204.09008 * 10 9 7 12 12 C 1.55160 * 101.58140 * 322.98582 * 11 10 9 13 13 C 1.47023 * 125.65413 * 218.40812 * 9 7 2 14 14 H 1.09004 * 109.87702 * 59.56037 * 13 9 7 15 15 C 1.53001 * 109.88005 * 298.40005 * 13 9 7 16 16 N 1.46498 * 109.47268 * 61.79108 * 15 13 9 17 17 C 1.34783 * 120.00101 * 186.20438 * 16 15 13 18 18 O 1.21282 * 119.99561 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99910 * 179.97438 * 17 16 15 20 20 C 1.56246 * 116.69187 * 297.57156 * 19 17 16 21 21 C 1.55906 * 102.63552 * 199.97117 * 20 19 17 22 22 N 1.49517 * 105.39526 * 0.47100 * 21 20 19 23 23 C 1.49514 * 105.92644 * 287.97152 * 22 21 20 24 24 C 1.54661 * 105.28727 * 71.25846 * 23 22 21 25 25 C 1.50464 * 102.03514 * 34.38212 * 22 21 20 26 26 H 0.97004 * 119.99861 * 0.02562 * 1 2 3 27 27 H 1.09000 * 110.36264 * 322.92418 * 10 9 7 28 28 H 1.08998 * 110.36767 * 85.24659 * 10 9 7 29 29 H 1.09002 * 111.00513 * 81.05858 * 11 10 9 30 30 H 1.08997 * 111.00830 * 204.87682 * 11 10 9 31 31 H 1.09004 * 110.72319 * 153.86388 * 12 11 10 32 32 H 1.08996 * 110.72288 * 277.13747 * 12 11 10 33 33 H 1.09007 * 109.46880 * 181.78550 * 15 13 9 34 34 H 1.08997 * 109.47424 * 301.78682 * 15 13 9 35 35 H 0.97005 * 120.00230 * 6.19895 * 16 15 13 36 36 H 1.09003 * 110.66889 * 319.48104 * 20 19 17 37 37 H 1.09004 * 110.66673 * 82.61718 * 20 19 17 38 38 H 1.09005 * 110.87762 * 241.14418 * 21 20 19 39 39 H 1.09002 * 109.65835 * 119.17012 * 21 20 19 40 40 H 1.09003 * 110.28729 * 190.21214 * 23 22 21 41 41 H 1.08995 * 110.28178 * 312.21564 * 23 22 21 42 42 H 1.08992 * 110.67062 * 242.22931 * 24 23 22 43 43 H 1.09000 * 110.66769 * 119.08705 * 24 23 22 44 44 H 1.08993 * 111.91550 * 188.40025 * 25 22 21 45 45 H 1.09004 * 111.97018 * 62.20836 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4352 2.0825 1.3982 5 1 1.4803 2.6338 -0.7616 6 1 3.5777 1.4229 -0.6367 7 6 2.0102 -1.2021 0.0005 8 1 1.4921 -2.1249 -0.2148 9 7 3.3519 -1.2180 0.2740 10 6 4.0332 -0.3856 1.2823 11 6 5.5024 -0.3002 0.7988 12 6 5.7250 -1.7247 0.2254 13 6 4.3507 -2.0726 -0.3846 14 1 4.3612 -1.8722 -1.4560 15 6 4.0235 -3.5455 -0.1310 16 7 2.7142 -3.8612 -0.7072 17 6 2.1599 -5.0718 -0.4979 18 8 2.7451 -5.8996 0.1679 19 6 0.8127 -5.3963 -1.0902 20 6 -0.3936 -4.5284 -0.6077 21 6 -1.6208 -5.4199 -0.9679 22 7 -1.0466 -6.6574 -1.5797 23 6 -0.5406 -6.2521 -2.9270 24 6 0.7110 -5.3870 -2.6493 25 6 0.2308 -6.8276 -0.8031 26 1 -0.4850 0.8401 -0.0004 27 1 3.5872 0.6083 1.3177 28 1 3.9833 -0.8599 2.2623 29 1 5.6146 0.4557 0.0216 30 1 6.1771 -0.1040 1.6320 31 1 6.4988 -1.7149 -0.5422 32 1 5.9783 -2.4254 1.0209 33 1 4.7853 -4.1720 -0.5951 34 1 4.0030 -3.7336 0.9425 35 1 2.2460 -3.1989 -1.2393 36 1 -0.3284 -4.3410 0.4641 37 1 -0.4384 -3.5904 -1.1613 38 1 -2.2729 -4.9139 -1.6799 39 1 -2.1727 -5.6677 -0.0611 40 1 -0.2695 -7.1327 -3.5094 41 1 -1.2954 -5.6688 -3.4543 42 1 0.5668 -4.3719 -3.0193 43 1 1.5972 -5.8381 -3.0954 44 1 0.8595 -7.6137 -1.2213 45 1 0.0443 -6.9852 0.2593 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028263534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:35 Heat of formation + Delta-G solvation = -4.372554 kcal Electronic energy + Delta-G solvation = -25224.367728 eV Core-core repulsion = 21856.003431 eV Total energy + Delta-G solvation = -3368.364296 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.08619 -40.25158 -39.20166 -35.52426 -34.62776 -32.12881 -31.76852 -31.60901 -30.46774 -29.03874 -26.67198 -25.65050 -23.48427 -23.27937 -22.13353 -21.68823 -21.30508 -20.17337 -18.89888 -17.95784 -17.61410 -17.09978 -17.00222 -16.39036 -16.27908 -15.82764 -15.46297 -15.15455 -14.83069 -14.27548 -14.21875 -13.88715 -13.77995 -13.73954 -13.57808 -13.13983 -13.04381 -12.96381 -12.73587 -12.60216 -12.42565 -12.28863 -12.24527 -12.08292 -11.73828 -11.61400 -11.51923 -11.38442 -11.26153 -10.79882 -10.68085 -10.08665 -9.93331 -8.69943 -8.13989 -5.59936 1.30908 1.40268 1.50691 1.56163 2.28226 2.44686 2.82526 3.09243 3.34236 3.46237 3.49388 3.79683 3.90824 3.94571 3.99398 4.04491 4.12976 4.15368 4.29819 4.31191 4.46619 4.47243 4.52857 4.63445 4.68822 4.73344 4.80227 4.84053 4.85752 4.91396 4.96069 4.98126 4.99368 5.03742 5.12835 5.13585 5.30286 5.46875 5.47011 5.55846 5.65077 5.92499 6.23375 6.60474 6.83588 7.24306 7.56140 8.24101 9.01546 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017703 B = 0.005593 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.235770 B = 5004.639695 C = 6139.037937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.018 4.018 3 Si 0.946 3.054 4 H -0.292 1.292 5 H -0.316 1.316 6 H -0.253 1.253 7 C -0.242 4.242 8 H 0.079 0.921 9 N -0.618 5.618 10 C 0.104 3.896 11 C -0.126 4.126 12 C -0.110 4.110 13 C 0.140 3.860 14 H 0.050 0.950 15 C 0.119 3.881 16 N -0.703 5.703 17 C 0.542 3.458 18 O -0.587 6.587 19 C -0.133 4.133 20 C -0.125 4.125 21 C 0.020 3.980 22 N -0.467 5.467 23 C 0.017 3.983 24 C -0.128 4.128 25 C 0.043 3.957 26 H 0.260 0.740 27 H 0.021 0.979 28 H 0.027 0.973 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.042 0.958 35 H 0.411 0.589 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.582 -7.635 -5.574 10.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.215 4.215 3 Si 0.778 3.222 4 H -0.220 1.220 5 H -0.245 1.245 6 H -0.177 1.177 7 C -0.371 4.371 8 H 0.096 0.904 9 N -0.345 5.345 10 C -0.020 4.020 11 C -0.164 4.164 12 C -0.149 4.149 13 C 0.034 3.966 14 H 0.068 0.932 15 C -0.006 4.006 16 N -0.354 5.354 17 C 0.329 3.671 18 O -0.469 6.469 19 C -0.137 4.137 20 C -0.164 4.164 21 C -0.108 4.108 22 N -0.186 5.186 23 C -0.112 4.112 24 C -0.167 4.167 25 C -0.086 4.086 26 H 0.069 0.931 27 H 0.039 0.961 28 H 0.045 0.955 29 H 0.084 0.916 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.250 0.750 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.119 0.881 41 H 0.111 0.889 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.113 0.887 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.274 -8.688 -5.181 11.408 hybrid contribution 0.167 2.359 0.324 2.387 sum 5.442 -6.329 -4.857 9.657 Atomic orbital electron populations 1.69877 1.07003 1.27021 1.54908 1.26042 0.95730 1.00806 0.98933 0.85797 0.79272 0.80553 0.76577 1.21979 1.24539 1.17719 1.18793 0.82357 0.93106 1.42862 0.90389 1.44836 1.03396 1.46475 1.39746 1.22067 0.93509 0.93753 0.92706 1.22746 0.94736 0.97593 1.01306 1.22522 0.94825 0.96274 1.01242 1.21488 0.90070 0.88465 0.96580 0.93169 1.21907 0.83909 0.97369 0.97452 1.46321 1.21419 1.14759 1.52932 1.19857 0.86100 0.81657 0.79512 1.90611 1.64873 1.49339 1.42048 1.23699 0.91991 0.99464 0.98588 1.23261 0.93835 0.98545 1.00778 1.23807 0.95977 0.89913 1.01146 1.69983 1.17483 1.28180 1.02975 1.23676 0.95402 0.99596 0.92503 1.23170 1.00520 1.02070 0.90900 1.24252 0.90694 0.94000 0.99642 0.93090 0.96091 0.95535 0.91641 0.88403 0.88067 0.90031 0.90784 0.93910 0.75031 0.93173 0.91309 0.88791 0.89661 0.88119 0.88921 0.90374 0.90159 0.88696 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.16 13.97 21.65 0.30 -54.86 16 2 C -0.02 -0.99 5.48 84.86 0.46 -0.53 16 3 Si 0.95 44.94 24.76 68.60 1.70 46.64 16 4 H -0.29 -13.82 6.86 99.48 0.68 -13.14 16 5 H -0.32 -15.42 7.11 99.48 0.71 -14.72 16 6 H -0.25 -11.19 6.77 99.48 0.67 -10.52 16 7 C -0.24 -12.39 9.42 84.03 0.79 -11.60 16 8 H 0.08 4.15 5.44 -2.91 -0.02 4.13 16 9 N -0.62 -26.72 2.65 -668.24 -1.77 -28.49 16 10 C 0.10 4.10 6.15 86.85 0.53 4.63 16 11 C -0.13 -3.63 7.09 31.98 0.23 -3.40 16 12 C -0.11 -2.87 6.49 31.79 0.21 -2.66 16 13 C 0.14 4.79 3.34 45.34 0.15 4.94 16 14 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 15 C 0.12 4.13 5.18 86.38 0.45 4.58 16 16 N -0.70 -25.88 4.36 -463.05 -2.02 -27.90 16 17 C 0.54 20.20 7.29 87.66 0.64 20.83 16 18 O -0.59 -24.95 16.55 -3.04 -0.05 -25.00 16 19 C -0.13 -4.11 1.37 -49.21 -0.07 -4.17 16 20 C -0.12 -4.10 6.13 32.73 0.20 -3.90 16 21 C 0.02 0.54 6.64 86.80 0.58 1.12 16 22 N -0.47 -11.85 6.94 -853.88 -5.93 -17.77 16 23 C 0.02 0.36 6.61 86.36 0.57 0.93 16 24 C -0.13 -3.15 6.05 32.29 0.20 -2.95 16 25 C 0.04 1.24 6.05 87.06 0.53 1.76 16 26 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 27 H 0.02 0.92 3.20 -2.39 -0.01 0.91 16 28 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 1.92 7.95 -2.39 -0.02 1.91 16 30 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.08 1.95 7.84 -2.39 -0.02 1.93 16 33 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.04 1.66 8.12 -2.39 -0.02 1.65 16 35 H 0.41 15.78 6.07 -92.70 -0.56 15.21 16 36 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.07 2.49 7.86 -2.39 -0.02 2.47 16 38 H 0.09 2.24 7.69 -2.38 -0.02 2.22 16 39 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.09 1.75 7.69 -2.39 -0.02 1.74 16 42 H 0.08 1.96 7.86 -2.39 -0.02 1.94 16 43 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 Total: -1.00 -64.42 340.85 -1.94 -66.36 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: 0.36 Total: 31.45 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 5.46 Total: 9.58 kcal Atomic # 7 Polarization: -119.61 SS G_CDS: -9.41 Total: -129.02 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.05 Total: -25.00 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.70 Total: 46.64 kcal Total: -64.42 -1.94 -66.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028263534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.984 kcal (2) G-P(sol) polarization free energy of solvation -64.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds