Wall clock time and date at job start Tue Mar 31 2020 07:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48497 * 109.47441 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47001 * 299.99904 * 3 2 1 6 6 H 1.48499 * 109.47209 * 59.99747 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53497 * 87.98534 * 153.14183 * 10 9 7 12 12 N 1.46500 * 114.20997 * 139.65257 * 11 10 9 13 13 C 1.34775 * 119.99656 * 111.40003 * 12 11 10 14 14 O 1.21281 * 120.00373 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99603 * 180.02562 * 13 12 11 16 16 H 1.08994 * 110.31025 * 300.69774 * 15 13 12 17 17 C 1.54989 * 110.34843 * 178.51343 * 15 13 12 18 18 C 1.53266 * 104.19079 * 243.62217 * 17 15 13 19 19 H 1.08993 * 110.30097 * 90.99215 * 18 17 15 20 20 C 1.52251 * 113.89555 * 215.60550 * 18 17 15 21 21 C 1.53667 * 107.57472 * 177.22886 * 20 18 17 22 22 C 1.52811 * 110.61754 * 303.87218 * 21 20 18 23 23 C 1.53631 * 110.69836 * 53.74424 * 22 21 20 24 24 N 1.45673 * 107.79523 * 302.62679 * 23 22 21 25 25 C 1.47263 * 116.55255 * 182.79962 * 24 23 22 26 26 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 27 27 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 28 28 H 1.09007 * 113.46858 * 267.91666 * 10 9 7 29 29 H 1.08993 * 113.47208 * 38.36002 * 10 9 7 30 30 H 1.09000 * 114.38223 * 272.46676 * 11 10 9 31 31 H 0.96993 * 119.99895 * 291.40037 * 12 11 10 32 32 H 1.08998 * 110.49012 * 2.29262 * 17 15 13 33 33 H 1.08996 * 110.49110 * 124.80977 * 17 15 13 34 34 H 1.09005 * 109.83813 * 296.74345 * 20 18 17 35 35 H 1.08996 * 109.84237 * 57.64212 * 20 18 17 36 36 H 1.09001 * 109.24612 * 64.16516 * 21 20 18 37 37 H 1.09001 * 109.24606 * 183.57869 * 21 20 18 38 38 H 1.08999 * 109.23270 * 174.05155 * 22 21 20 39 39 H 1.09001 * 109.23560 * 293.42858 * 22 21 20 40 40 H 1.08995 * 109.79724 * 62.19858 * 23 22 21 41 41 H 1.09002 * 109.79864 * 183.05536 * 23 22 21 42 42 H 1.08997 * 110.71064 * 79.11970 * 25 24 23 43 43 H 1.08994 * 110.59018 * 316.08415 * 25 24 23 44 44 H 1.09005 * 113.46156 * 321.64040 * 26 9 7 45 45 H 1.08998 * 113.46839 * 92.07408 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3387 -4.0929 -0.6925 12 7 -0.3514 -5.2910 -0.2082 13 6 -1.2259 -5.9341 -1.0070 14 8 -1.4412 -5.5213 -2.1269 15 6 -1.9363 -7.1662 -0.5086 16 1 -1.2137 -7.9356 -0.2368 17 6 -2.9114 -7.7000 -1.5885 18 6 -4.2962 -7.5590 -0.9471 19 1 -4.7297 -6.5896 -1.1926 20 6 -5.2624 -8.6771 -1.3137 21 6 -6.5694 -8.4320 -0.5436 22 6 -6.3006 -8.3430 0.9581 23 6 -5.2185 -7.2936 1.2547 24 7 -4.0223 -7.6649 0.5109 25 6 -2.8350 -6.8162 0.7073 26 6 1.6797 -3.8155 0.0005 27 1 -0.4849 0.8401 -0.0004 28 1 -0.4897 -2.9528 1.0077 29 1 -0.7251 -2.1596 -0.6083 30 1 0.3759 -4.0270 -1.7799 31 1 -0.1790 -5.6213 0.6873 32 1 -2.8468 -7.0956 -2.4933 33 1 -2.6973 -8.7449 -1.8129 34 1 -5.4565 -8.6615 -2.3862 35 1 -4.8391 -9.6402 -1.0286 36 1 -7.0175 -7.4986 -0.8844 37 1 -7.2598 -9.2530 -0.7370 38 1 -7.2209 -8.0647 1.4717 39 1 -5.9672 -9.3151 1.3214 40 1 -5.5612 -6.3095 0.9352 41 1 -4.9999 -7.2804 2.3225 42 1 -2.3320 -7.0671 1.6411 43 1 -3.1105 -5.7618 0.6899 44 1 2.5452 -4.0479 -0.6200 45 1 1.7491 -4.2455 0.9997 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030308771.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:39 Heat of formation + Delta-G solvation = 20.882104 kcal Electronic energy + Delta-G solvation = -23911.791552 eV Core-core repulsion = 20544.522380 eV Total energy + Delta-G solvation = -3367.269172 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.55548 -39.14590 -37.67301 -34.95035 -33.56759 -32.37616 -31.89792 -29.76548 -27.57603 -27.25146 -24.64638 -24.17417 -22.95476 -22.13641 -21.46170 -20.07608 -19.86027 -19.31841 -17.10538 -16.77536 -16.10585 -15.61184 -15.50894 -14.93719 -14.88744 -14.55704 -14.35833 -13.91610 -13.74430 -13.46683 -13.15121 -12.77604 -12.66394 -12.48549 -12.11353 -11.74715 -11.55444 -11.45686 -11.38651 -11.28785 -10.95190 -10.92898 -10.83601 -10.73484 -10.56652 -10.48763 -10.40061 -10.07077 -9.53057 -9.46095 -8.86201 -8.59836 -8.39797 -6.95811 -5.81060 -3.15295 2.86070 3.36176 3.39901 3.44700 3.45816 3.84064 4.33171 4.43313 4.45460 4.69527 4.79770 4.81792 4.87230 5.02349 5.17240 5.21963 5.30322 5.33406 5.36977 5.44324 5.47379 5.54446 5.58113 5.60958 5.72593 5.72824 5.80145 5.87559 5.92455 5.98701 6.04383 6.10899 6.19242 6.21806 6.37329 6.52556 6.72549 6.74731 7.00769 7.17909 7.32457 7.51915 7.86488 7.92695 8.53317 8.98500 9.65049 10.56140 11.36109 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.029127 B = 0.002983 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.079706 B = 9384.517389 C = 9762.551621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.007 4.007 3 Si 0.916 3.084 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.220 4.220 8 H 0.084 0.916 9 N -0.604 5.604 10 C 0.145 3.855 11 C 0.086 3.914 12 N -0.711 5.711 13 C 0.516 3.484 14 O -0.541 6.541 15 C -0.112 4.112 16 H 0.105 0.895 17 C -0.106 4.106 18 C 0.061 3.939 19 H 0.054 0.946 20 C -0.104 4.104 21 C -0.121 4.121 22 C -0.113 4.113 23 C 0.052 3.948 24 N -0.522 5.522 25 C 0.053 3.947 26 C 0.111 3.889 27 H 0.254 0.746 28 H 0.026 0.974 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.397 0.603 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.035 0.965 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.049 0.951 44 H 0.045 0.955 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.502 -19.804 1.874 22.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.204 4.204 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.347 4.347 8 H 0.102 0.898 9 N -0.330 5.330 10 C 0.018 3.982 11 C -0.019 4.019 12 N -0.360 5.360 13 C 0.301 3.699 14 O -0.418 6.418 15 C -0.134 4.134 16 H 0.123 0.877 17 C -0.144 4.144 18 C -0.047 4.047 19 H 0.072 0.928 20 C -0.142 4.142 21 C -0.159 4.159 22 C -0.151 4.151 23 C -0.076 4.076 24 N -0.247 5.247 25 C -0.075 4.075 26 C -0.016 4.016 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.092 0.908 30 H 0.133 0.867 31 H 0.230 0.770 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.053 0.947 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -10.491 -19.605 1.263 22.271 hybrid contribution 0.330 1.676 0.589 1.807 sum -10.161 -17.929 1.852 20.691 Atomic orbital electron populations 1.69854 1.05081 1.25407 1.55997 1.24848 0.95733 0.97703 1.02113 0.85990 0.78706 0.83401 0.77317 1.20344 1.21555 1.21673 1.18953 0.90155 0.81038 1.44575 0.89808 1.45281 1.02741 0.99177 1.85819 1.22502 0.89034 0.89944 0.96677 1.23624 0.93941 0.84064 1.00299 1.46016 1.43390 1.29162 1.17478 1.20431 0.79370 0.84606 0.85486 1.90671 1.63869 1.67244 1.20004 1.22305 0.98135 0.96270 0.96685 0.87729 1.22181 0.92016 1.01937 0.98314 1.22459 0.95746 0.98256 0.88264 0.92846 1.21497 0.94578 0.98680 0.99427 1.21592 0.97447 1.01609 0.95266 1.21562 0.97557 0.99711 0.96223 1.22042 0.90110 0.96914 0.98575 1.63989 1.04312 1.51159 1.05232 1.22799 0.91217 0.95918 0.97605 1.22710 0.94956 0.87081 0.96876 0.93578 0.95677 0.90781 0.86676 0.76968 0.88741 0.90602 0.91505 0.90837 0.92405 0.91912 0.91780 0.91249 0.94657 0.90642 0.89385 0.93239 0.93644 0.94853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.60 11.51 55.49 0.64 -26.97 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.92 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.22 -6.22 10.75 -15.06 -0.16 -6.38 16 8 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 9 N -0.60 -15.65 3.78 -184.80 -0.70 -16.35 16 10 C 0.15 3.48 7.21 -8.51 -0.06 3.42 16 11 C 0.09 1.68 4.61 -67.82 -0.31 1.37 16 12 N -0.71 -10.75 5.35 -53.63 -0.29 -11.04 16 13 C 0.52 7.93 7.04 -10.99 -0.08 7.86 16 14 O -0.54 -10.56 14.86 5.56 0.08 -10.48 16 15 C -0.11 -1.28 3.47 -89.56 -0.31 -1.59 16 16 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 17 C -0.11 -1.20 6.22 -25.54 -0.16 -1.36 16 18 C 0.06 0.65 2.49 -66.94 -0.17 0.48 16 19 H 0.05 0.66 8.00 -51.93 -0.42 0.25 16 20 C -0.10 -0.91 5.64 -26.77 -0.15 -1.06 16 21 C -0.12 -0.97 5.95 -26.48 -0.16 -1.12 16 22 C -0.11 -0.90 6.06 -26.50 -0.16 -1.06 16 23 C 0.05 0.49 5.88 -4.16 -0.02 0.47 16 24 N -0.52 -5.45 4.84 -224.34 -1.09 -6.53 16 25 C 0.05 0.57 6.22 -2.46 -0.02 0.56 16 26 C 0.11 2.24 8.45 -8.52 -0.07 2.16 16 27 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 2.04 7.12 -51.93 -0.37 1.67 16 30 H 0.12 2.48 7.45 -51.93 -0.39 2.09 16 31 H 0.40 4.82 8.76 -40.82 -0.36 4.46 16 32 H 0.09 1.28 6.50 -51.93 -0.34 0.94 16 33 H 0.08 0.74 8.00 -51.93 -0.42 0.33 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.04 0.36 8.00 -51.93 -0.42 -0.05 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.05 0.62 7.88 -51.93 -0.41 0.21 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.03 0.62 8.13 -51.93 -0.42 0.19 16 LS Contribution 352.23 15.07 5.31 5.31 Total: -1.00 -32.73 352.23 -10.72 -43.45 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -7.73 Total: 1.96 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -1.93 Total: 3.45 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -1.43 Total: -60.89 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.48 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.73 -10.72 -43.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030308771.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.329 kcal (2) G-P(sol) polarization free energy of solvation -32.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds