Wall clock time and date at job start Tue Mar 31 2020 07:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48497 * 109.47441 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47001 * 299.99904 * 3 2 1 6 6 H 1.48499 * 109.47209 * 59.99747 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53497 * 87.98534 * 153.14183 * 10 9 7 12 12 N 1.46500 * 114.20997 * 139.65257 * 11 10 9 13 13 C 1.34775 * 119.99656 * 111.40003 * 12 11 10 14 14 O 1.21281 * 120.00373 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99603 * 180.02562 * 13 12 11 16 16 H 1.08994 * 110.31025 * 300.69774 * 15 13 12 17 17 C 1.54989 * 110.34843 * 178.51343 * 15 13 12 18 18 C 1.53266 * 104.19079 * 243.62217 * 17 15 13 19 19 H 1.08993 * 110.30097 * 90.99215 * 18 17 15 20 20 C 1.52251 * 113.89555 * 215.60550 * 18 17 15 21 21 C 1.53667 * 107.57472 * 177.22886 * 20 18 17 22 22 C 1.52811 * 110.61754 * 303.87218 * 21 20 18 23 23 C 1.53631 * 110.69836 * 53.74424 * 22 21 20 24 24 N 1.45673 * 107.79523 * 302.62679 * 23 22 21 25 25 C 1.47263 * 116.55255 * 182.79962 * 24 23 22 26 26 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 27 27 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 28 28 H 1.09007 * 113.46858 * 267.91666 * 10 9 7 29 29 H 1.08993 * 113.47208 * 38.36002 * 10 9 7 30 30 H 1.09000 * 114.38223 * 272.46676 * 11 10 9 31 31 H 0.96993 * 119.99895 * 291.40037 * 12 11 10 32 32 H 1.08998 * 110.49012 * 2.29262 * 17 15 13 33 33 H 1.08996 * 110.49110 * 124.80977 * 17 15 13 34 34 H 1.09005 * 109.83813 * 296.74345 * 20 18 17 35 35 H 1.08996 * 109.84237 * 57.64212 * 20 18 17 36 36 H 1.09001 * 109.24612 * 64.16516 * 21 20 18 37 37 H 1.09001 * 109.24606 * 183.57869 * 21 20 18 38 38 H 1.08999 * 109.23270 * 174.05155 * 22 21 20 39 39 H 1.09001 * 109.23560 * 293.42858 * 22 21 20 40 40 H 1.08995 * 109.79724 * 62.19858 * 23 22 21 41 41 H 1.09002 * 109.79864 * 183.05536 * 23 22 21 42 42 H 1.08997 * 110.71064 * 79.11970 * 25 24 23 43 43 H 1.08994 * 110.59018 * 316.08415 * 25 24 23 44 44 H 1.09005 * 113.46156 * 321.64040 * 26 9 7 45 45 H 1.08998 * 113.46839 * 92.07408 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3387 -4.0929 -0.6925 12 7 -0.3514 -5.2910 -0.2082 13 6 -1.2259 -5.9341 -1.0070 14 8 -1.4412 -5.5213 -2.1269 15 6 -1.9363 -7.1662 -0.5086 16 1 -1.2137 -7.9356 -0.2368 17 6 -2.9114 -7.7000 -1.5885 18 6 -4.2962 -7.5590 -0.9471 19 1 -4.7297 -6.5896 -1.1926 20 6 -5.2624 -8.6771 -1.3137 21 6 -6.5694 -8.4320 -0.5436 22 6 -6.3006 -8.3430 0.9581 23 6 -5.2185 -7.2936 1.2547 24 7 -4.0223 -7.6649 0.5109 25 6 -2.8350 -6.8162 0.7073 26 6 1.6797 -3.8155 0.0005 27 1 -0.4849 0.8401 -0.0004 28 1 -0.4897 -2.9528 1.0077 29 1 -0.7251 -2.1596 -0.6083 30 1 0.3759 -4.0270 -1.7799 31 1 -0.1790 -5.6213 0.6873 32 1 -2.8468 -7.0956 -2.4933 33 1 -2.6973 -8.7449 -1.8129 34 1 -5.4565 -8.6615 -2.3862 35 1 -4.8391 -9.6402 -1.0286 36 1 -7.0175 -7.4986 -0.8844 37 1 -7.2598 -9.2530 -0.7370 38 1 -7.2209 -8.0647 1.4717 39 1 -5.9672 -9.3151 1.3214 40 1 -5.5612 -6.3095 0.9352 41 1 -4.9999 -7.2804 2.3225 42 1 -2.3320 -7.0671 1.6411 43 1 -3.1105 -5.7618 0.6899 44 1 2.5452 -4.0479 -0.6200 45 1 1.7491 -4.2455 0.9997 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030308771.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:39 Heat of formation + Delta-G solvation = -2.341825 kcal Electronic energy + Delta-G solvation = -23912.798617 eV Core-core repulsion = 20544.522380 eV Total energy + Delta-G solvation = -3368.276237 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.62680 -40.44596 -39.22460 -35.80252 -35.18645 -33.82065 -33.17125 -30.76104 -29.35896 -28.16332 -26.44977 -25.62983 -24.16021 -23.14664 -22.39313 -21.47105 -20.95148 -20.52500 -18.81460 -18.23561 -17.40891 -16.98933 -16.64639 -16.43737 -15.93866 -15.78203 -15.50864 -15.22259 -14.85153 -14.67426 -14.41370 -13.97110 -13.80816 -13.51701 -13.37424 -13.27738 -13.18629 -12.93030 -12.74881 -12.55352 -12.33525 -12.22812 -12.15854 -11.95623 -11.67427 -11.53285 -11.44195 -11.30928 -11.18849 -10.95761 -10.84011 -9.94156 -9.46960 -9.02007 -7.96121 -5.31933 1.43856 1.45871 1.56334 1.59696 2.11962 2.47374 2.97021 3.25462 3.43192 3.45858 3.60256 3.78529 3.86369 3.98266 4.02846 4.11730 4.19730 4.30432 4.32462 4.46589 4.50786 4.55991 4.57573 4.70788 4.71544 4.82184 4.83526 4.86365 4.93955 5.03710 5.08168 5.12162 5.13253 5.16897 5.21120 5.28323 5.32653 5.42551 5.50275 5.68178 5.84942 5.88729 6.18273 6.60494 6.83283 7.28848 7.53436 8.51255 9.21489 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.029127 B = 0.002983 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.079706 B = 9384.517389 C = 9762.551621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.071 4.071 3 Si 0.986 3.014 4 H -0.260 1.260 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.229 4.229 8 H 0.093 0.907 9 N -0.638 5.638 10 C 0.144 3.856 11 C 0.115 3.885 12 N -0.697 5.697 13 C 0.515 3.485 14 O -0.586 6.586 15 C -0.100 4.100 16 H 0.139 0.861 17 C -0.106 4.106 18 C 0.060 3.940 19 H 0.026 0.974 20 C -0.100 4.100 21 C -0.122 4.122 22 C -0.108 4.108 23 C 0.047 3.953 24 N -0.516 5.516 25 C 0.054 3.946 26 C 0.121 3.879 27 H 0.248 0.752 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.093 0.907 31 H 0.416 0.584 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.019 0.981 41 H 0.085 0.915 42 H 0.114 0.886 43 H 0.024 0.976 44 H 0.060 0.940 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.748 -22.256 3.153 24.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.264 4.264 3 Si 0.813 3.187 4 H -0.183 1.183 5 H -0.221 1.221 6 H -0.218 1.218 7 C -0.357 4.357 8 H 0.111 0.889 9 N -0.365 5.365 10 C 0.017 3.983 11 C 0.008 3.992 12 N -0.348 5.348 13 C 0.302 3.698 14 O -0.466 6.466 15 C -0.122 4.122 16 H 0.157 0.843 17 C -0.144 4.144 18 C -0.049 4.049 19 H 0.044 0.956 20 C -0.138 4.138 21 C -0.160 4.160 22 C -0.146 4.146 23 C -0.081 4.081 24 N -0.240 5.240 25 C -0.075 4.075 26 C -0.004 4.004 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.111 0.889 31 H 0.254 0.746 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.037 0.963 41 H 0.104 0.896 42 H 0.132 0.868 43 H 0.042 0.958 44 H 0.078 0.922 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.716 -22.121 2.577 24.298 hybrid contribution 0.058 2.386 0.176 2.393 sum -9.658 -19.735 2.752 22.143 Atomic orbital electron populations 1.70065 1.06761 1.25685 1.57887 1.25773 0.96606 1.01347 1.02667 0.84903 0.78338 0.78760 0.76674 1.18346 1.22053 1.21763 1.19405 0.90904 0.82285 1.43088 0.88888 1.45604 1.03737 1.00965 1.86170 1.22443 0.88027 0.91527 0.96321 1.22871 0.93756 0.83906 0.98653 1.45762 1.42985 1.27588 1.18465 1.21186 0.78587 0.85286 0.84691 1.90666 1.65083 1.68659 1.22205 1.22332 0.98476 0.94630 0.96762 0.84340 1.22174 0.92403 1.02642 0.97231 1.22451 0.95853 0.97849 0.88698 0.95563 1.21489 0.94388 0.97997 0.99903 1.21612 0.97308 1.01829 0.95241 1.21551 0.97483 0.99337 0.96249 1.22156 0.90236 0.96751 0.98984 1.64075 1.04521 1.50555 1.04897 1.22853 0.91594 0.94684 0.98346 1.22820 0.95288 0.83794 0.98545 0.94291 0.95560 0.95492 0.88899 0.74644 0.91444 0.88367 0.91076 0.89999 0.93309 0.90249 0.90569 0.90629 0.96281 0.89619 0.86785 0.95753 0.92206 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.59 11.51 21.65 0.25 -59.34 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 3 Si 0.99 46.26 29.55 68.60 2.03 48.29 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 6 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 7 C -0.23 -12.97 10.75 84.03 0.90 -12.07 16 8 H 0.09 4.94 7.83 -2.91 -0.02 4.92 16 9 N -0.64 -33.20 3.78 -738.57 -2.79 -35.99 16 10 C 0.14 7.11 7.21 83.18 0.60 7.71 16 11 C 0.12 4.48 4.61 45.46 0.21 4.69 16 12 N -0.70 -20.21 5.35 -441.97 -2.36 -22.57 16 13 C 0.51 15.56 7.04 87.66 0.62 16.17 16 14 O -0.59 -23.53 14.86 -3.03 -0.05 -23.58 16 15 C -0.10 -2.09 3.47 -10.11 -0.04 -2.13 16 16 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 17 C -0.11 -2.30 6.22 31.36 0.20 -2.10 16 18 C 0.06 1.24 2.49 44.40 0.11 1.35 16 19 H 0.03 0.68 8.00 -2.39 -0.02 0.66 16 20 C -0.10 -1.59 5.64 30.57 0.17 -1.42 16 21 C -0.12 -1.74 5.95 30.76 0.18 -1.56 16 22 C -0.11 -1.50 6.06 30.74 0.19 -1.31 16 23 C 0.05 0.83 5.88 86.75 0.51 1.34 16 24 N -0.52 -9.87 4.84 -863.69 -4.18 -14.05 16 25 C 0.05 1.06 6.22 86.99 0.54 1.60 16 26 C 0.12 4.67 8.45 83.17 0.70 5.37 16 27 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 28 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.03 1.56 7.12 -2.39 -0.02 1.54 16 30 H 0.09 4.11 7.45 -2.39 -0.02 4.09 16 31 H 0.42 8.95 8.76 -92.71 -0.81 8.14 16 32 H 0.07 1.86 6.50 -2.39 -0.02 1.85 16 33 H 0.10 1.68 8.00 -2.39 -0.02 1.66 16 34 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.02 0.40 8.00 -2.39 -0.02 0.38 16 41 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.02 0.61 7.88 -2.39 -0.02 0.59 16 44 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 45 H 0.07 2.18 8.13 -2.39 -0.02 2.17 16 Total: -1.00 -73.88 352.23 -1.58 -75.47 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.16 Total: 17.78 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 5.36 Total: 13.99 kcal Atomic # 7 Polarization: -122.87 SS G_CDS: -9.09 Total: -131.95 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.05 Total: -23.58 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -73.88 -1.58 -75.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030308771.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.126 kcal (2) G-P(sol) polarization free energy of solvation -73.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds