Wall clock time and date at job start Tue Mar 31 2020 07:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99442 * 2 1 4 4 H 1.48496 * 109.46983 * 274.98392 * 3 2 1 5 5 H 1.48496 * 109.47396 * 34.98602 * 3 2 1 6 6 H 1.48501 * 109.46921 * 154.98507 * 3 2 1 7 7 C 1.38816 * 120.00672 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99883 * 185.06330 * 7 2 1 9 9 N 1.36939 * 119.99400 * 5.06615 * 7 2 1 10 10 C 1.47583 * 134.48923 * 173.47916 * 9 7 2 11 11 C 1.53946 * 86.11687 * 155.35861 * 10 9 7 12 12 N 1.46492 * 113.74169 * 137.95035 * 11 10 9 13 13 C 1.34773 * 119.99897 * 156.92359 * 12 11 10 14 14 O 1.21283 * 120.00148 * 0.02562 * 13 12 11 15 15 C 1.50704 * 119.99847 * 180.02562 * 13 12 11 16 16 H 1.08998 * 110.30611 * 57.84328 * 15 13 12 17 17 C 1.55330 * 110.33554 * 180.02562 * 15 13 12 18 18 C 1.53924 * 102.08713 * 141.07471 * 17 15 13 19 19 H 1.08997 * 111.53706 * 78.90927 * 18 17 15 20 20 C 1.52369 * 113.27560 * 204.91505 * 18 17 15 21 21 C 1.53630 * 107.64748 * 174.98341 * 20 18 17 22 22 C 1.52828 * 110.60829 * 303.55224 * 21 20 18 23 23 C 1.53632 * 110.64978 * 53.87022 * 22 21 20 24 24 N 1.45537 * 107.86324 * 302.87067 * 23 22 21 25 25 C 1.46334 * 117.21668 * 185.53277 * 24 23 22 26 26 C 1.47814 * 134.45904 * 353.34702 * 9 7 2 27 27 H 0.96995 * 120.00322 * 0.02562 * 1 2 3 28 28 H 1.09002 * 113.76681 * 41.05606 * 10 9 7 29 29 H 1.08996 * 113.76853 * 269.66222 * 10 9 7 30 30 H 1.09003 * 113.73966 * 269.15643 * 11 10 9 31 31 H 0.97006 * 120.00294 * 336.92848 * 12 11 10 32 32 H 1.08999 * 110.90950 * 22.87874 * 17 15 13 33 33 H 1.09003 * 110.91054 * 259.27417 * 17 15 13 34 34 H 1.09000 * 109.83280 * 55.42420 * 20 18 17 35 35 H 1.08999 * 109.83215 * 294.53745 * 20 18 17 36 36 H 1.09003 * 109.25107 * 63.84433 * 21 20 18 37 37 H 1.09003 * 109.24799 * 183.26432 * 21 20 18 38 38 H 1.08995 * 109.23959 * 174.16883 * 22 21 20 39 39 H 1.09001 * 109.24086 * 293.60874 * 22 21 20 40 40 H 1.09007 * 109.78291 * 62.45560 * 23 22 21 41 41 H 1.08996 * 109.78722 * 183.22694 * 23 22 21 42 42 H 1.08992 * 110.15103 * 327.20385 * 25 24 23 43 43 H 1.08995 * 110.15026 * 88.95707 * 25 24 23 44 44 H 1.09000 * 113.76787 * 90.37858 * 26 9 7 45 45 H 1.08999 * 113.83617 * 318.91877 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5041 2.6200 0.8027 6 1 3.5963 1.4123 0.5920 7 6 2.0104 -1.2021 0.0005 8 1 3.0872 -1.2037 0.0831 9 7 1.3297 -2.3858 -0.1037 10 6 1.7289 -3.7985 -0.2550 11 6 0.3713 -4.1417 0.3844 12 7 -0.3171 -5.2634 -0.2591 13 6 -1.2384 -5.9704 0.4247 14 8 -1.4980 -5.6778 1.5727 15 6 -1.9461 -7.1247 -0.2372 16 1 -1.2231 -7.8635 -0.5830 17 6 -2.9549 -7.7760 0.7482 18 6 -4.1445 -8.0975 -0.1742 19 1 -3.9660 -9.0010 -0.7572 20 6 -5.4742 -8.1805 0.5650 21 6 -6.5789 -8.3782 -0.4842 22 6 -6.5471 -7.2525 -1.5174 23 6 -5.1460 -7.1227 -2.1343 24 7 -4.2005 -6.8968 -1.0513 25 6 -2.8124 -6.6189 -1.4217 26 6 -0.1000 -2.7610 -0.1072 27 1 -0.4850 0.8400 -0.0004 28 1 2.5863 -4.0806 0.3561 29 1 1.8200 -4.1205 -1.2924 30 1 0.4078 -4.2320 1.4701 31 1 -0.1097 -5.4973 -1.1775 32 1 -3.2464 -7.0724 1.5280 33 1 -2.5420 -8.6866 1.1823 34 1 -5.6490 -7.2567 1.1166 35 1 -5.4625 -9.0255 1.2534 36 1 -6.4290 -9.3330 -0.9883 37 1 -7.5493 -8.3830 0.0122 38 1 -7.2681 -7.4681 -2.3058 39 1 -6.8142 -6.3131 -1.0334 40 1 -4.8891 -8.0409 -2.6627 41 1 -5.1240 -6.2806 -2.8260 42 1 -2.5524 -7.1562 -2.3337 43 1 -2.6685 -5.5477 -1.5623 44 1 -0.5473 -2.7777 -1.1010 45 1 -0.7001 -2.2164 0.6217 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030308772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:41 Heat of formation + Delta-G solvation = 18.314992 kcal Electronic energy + Delta-G solvation = -23949.688283 eV Core-core repulsion = 20582.307793 eV Total energy + Delta-G solvation = -3367.380490 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.49165 -39.05280 -37.46084 -34.93544 -33.48269 -32.38012 -31.81735 -29.73159 -27.52768 -27.20966 -24.81242 -24.10503 -22.90187 -22.09515 -21.42079 -20.06009 -19.75196 -19.33348 -16.84471 -16.73812 -16.15608 -15.84596 -15.58702 -14.92441 -14.76358 -14.55313 -14.08643 -13.89699 -13.77239 -13.45212 -13.00913 -12.76489 -12.56243 -12.41357 -12.05575 -11.72771 -11.63854 -11.43674 -11.43250 -11.20981 -10.95678 -10.86821 -10.82490 -10.76959 -10.53653 -10.47444 -10.42212 -10.02655 -9.53434 -9.38942 -8.79628 -8.43676 -8.39365 -6.90043 -5.77954 -3.11174 2.94357 3.39405 3.43272 3.47240 3.53497 3.75470 4.32440 4.44220 4.48858 4.69760 4.79440 4.81852 4.89050 5.08027 5.11637 5.15922 5.26160 5.32257 5.35234 5.40904 5.47662 5.57396 5.61343 5.65029 5.65925 5.76574 5.80889 5.87725 5.96336 5.98031 6.04618 6.18927 6.22996 6.29509 6.43799 6.58034 6.79724 6.84708 7.11162 7.25512 7.38130 7.57613 7.92463 7.96860 8.60831 9.03033 9.69361 10.57087 11.39227 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.027139 B = 0.003078 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.480358 B = 9093.276213 C = 9584.602787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.227 4.227 8 H 0.082 0.918 9 N -0.607 5.607 10 C 0.112 3.888 11 C 0.091 3.909 12 N -0.716 5.716 13 C 0.521 3.479 14 O -0.538 6.538 15 C -0.120 4.120 16 H 0.098 0.902 17 C -0.100 4.100 18 C 0.066 3.934 19 H 0.052 0.948 20 C -0.106 4.106 21 C -0.119 4.119 22 C -0.115 4.115 23 C 0.061 3.939 24 N -0.534 5.534 25 C 0.062 3.938 26 C 0.158 3.842 27 H 0.255 0.745 28 H 0.048 0.952 29 H 0.034 0.966 30 H 0.109 0.891 31 H 0.395 0.605 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.030 0.970 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.087 0.913 44 H 0.030 0.970 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.202 -20.340 -4.460 23.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.355 4.355 8 H 0.100 0.900 9 N -0.334 5.334 10 C -0.015 4.015 11 C -0.013 4.013 12 N -0.366 5.366 13 C 0.307 3.693 14 O -0.414 6.414 15 C -0.142 4.142 16 H 0.116 0.884 17 C -0.138 4.138 18 C -0.042 4.042 19 H 0.070 0.930 20 C -0.144 4.144 21 C -0.157 4.157 22 C -0.153 4.153 23 C -0.067 4.067 24 N -0.259 5.259 25 C -0.066 4.066 26 C 0.032 3.968 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.127 0.873 31 H 0.229 0.771 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.049 0.951 41 H 0.093 0.907 42 H 0.064 0.936 43 H 0.105 0.895 44 H 0.048 0.952 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.540 -19.304 -3.377 22.252 hybrid contribution 0.926 0.206 -1.304 1.612 sum -9.615 -19.099 -4.681 21.888 Atomic orbital electron populations 1.69848 1.05076 1.25521 1.55724 1.24856 0.95685 0.97641 1.02039 0.86104 0.78742 0.83466 0.77488 1.21595 1.21622 1.20489 1.18983 0.90723 0.81720 1.44046 0.90047 1.45717 1.02464 1.00518 1.84716 1.22868 0.94753 0.86815 0.97047 1.23891 0.93270 0.85502 0.98686 1.46138 1.40905 1.33222 1.16353 1.20253 0.79413 0.83088 0.86583 1.90681 1.63922 1.68991 1.17843 1.22524 0.97968 0.96727 0.96949 0.88367 1.22346 0.93104 1.00836 0.97513 1.22631 0.95642 0.91521 0.94358 0.92997 1.21522 0.93074 1.02507 0.97323 1.21568 0.98957 0.98235 0.96923 1.21591 0.95649 0.99764 0.98294 1.21945 0.92408 0.99780 0.92570 1.62752 1.07435 1.35744 1.19982 1.22529 0.87097 1.02038 0.94981 1.22638 0.87956 0.88096 0.98147 0.93513 0.93360 0.94807 0.87279 0.77142 0.88311 0.90894 0.90468 0.91606 0.92666 0.91909 0.91814 0.90996 0.95141 0.90674 0.93642 0.89515 0.95249 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.71 11.51 55.49 0.64 -27.07 16 2 C 0.00 -0.14 5.50 -17.43 -0.10 -0.24 16 3 Si 0.91 22.33 29.56 -169.99 -5.02 17.30 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.23 -6.45 10.70 -15.06 -0.16 -6.61 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 N -0.61 -15.78 3.70 -177.87 -0.66 -16.43 16 10 C 0.11 2.25 8.69 -2.97 -0.03 2.23 16 11 C 0.09 1.80 4.40 -70.14 -0.31 1.49 16 12 N -0.72 -11.00 5.32 -55.34 -0.29 -11.30 16 13 C 0.52 8.19 6.95 -10.99 -0.08 8.11 16 14 O -0.54 -10.74 15.07 5.56 0.08 -10.66 16 15 C -0.12 -1.37 3.43 -89.36 -0.31 -1.67 16 16 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 17 C -0.10 -1.13 5.95 -25.01 -0.15 -1.28 16 18 C 0.07 0.66 2.64 -66.50 -0.18 0.48 16 19 H 0.05 0.48 8.05 -51.93 -0.42 0.06 16 20 C -0.11 -0.97 5.67 -26.73 -0.15 -1.12 16 21 C -0.12 -0.95 5.94 -26.49 -0.16 -1.10 16 22 C -0.12 -0.98 6.06 -26.49 -0.16 -1.14 16 23 C 0.06 0.58 5.85 -4.23 -0.02 0.55 16 24 N -0.53 -6.00 4.65 -224.67 -1.05 -7.05 16 25 C 0.06 0.68 6.50 -2.95 -0.02 0.66 16 26 C 0.16 3.84 7.24 -2.84 -0.02 3.82 16 27 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.03 0.63 8.11 -51.93 -0.42 0.21 16 30 H 0.11 2.34 7.51 -51.93 -0.39 1.95 16 31 H 0.40 4.89 8.71 -40.82 -0.36 4.53 16 32 H 0.10 1.40 6.88 -51.93 -0.36 1.04 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.03 0.26 8.04 -51.93 -0.42 -0.15 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.41 8.04 -51.93 -0.42 0.00 16 43 H 0.09 1.11 7.69 -51.93 -0.40 0.71 16 44 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 2.00 7.37 -51.93 -0.38 1.62 16 LS Contribution 352.74 15.07 5.32 5.32 Total: -1.00 -33.25 352.74 -10.57 -43.82 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.76 Total: 1.90 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -1.83 Total: 4.18 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -1.36 Total: -61.85 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.25 -10.57 -43.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030308772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.133 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds