Wall clock time and date at job start Tue Mar 31 2020 07:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99442 * 2 1 4 4 H 1.48496 * 109.46983 * 274.98392 * 3 2 1 5 5 H 1.48496 * 109.47396 * 34.98602 * 3 2 1 6 6 H 1.48501 * 109.46921 * 154.98507 * 3 2 1 7 7 C 1.38816 * 120.00672 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99883 * 185.06330 * 7 2 1 9 9 N 1.36939 * 119.99400 * 5.06615 * 7 2 1 10 10 C 1.47583 * 134.48923 * 173.47916 * 9 7 2 11 11 C 1.53946 * 86.11687 * 155.35861 * 10 9 7 12 12 N 1.46492 * 113.74169 * 137.95035 * 11 10 9 13 13 C 1.34773 * 119.99897 * 156.92359 * 12 11 10 14 14 O 1.21283 * 120.00148 * 0.02562 * 13 12 11 15 15 C 1.50704 * 119.99847 * 180.02562 * 13 12 11 16 16 H 1.08998 * 110.30611 * 57.84328 * 15 13 12 17 17 C 1.55330 * 110.33554 * 180.02562 * 15 13 12 18 18 C 1.53924 * 102.08713 * 141.07471 * 17 15 13 19 19 H 1.08997 * 111.53706 * 78.90927 * 18 17 15 20 20 C 1.52369 * 113.27560 * 204.91505 * 18 17 15 21 21 C 1.53630 * 107.64748 * 174.98341 * 20 18 17 22 22 C 1.52828 * 110.60829 * 303.55224 * 21 20 18 23 23 C 1.53632 * 110.64978 * 53.87022 * 22 21 20 24 24 N 1.45537 * 107.86324 * 302.87067 * 23 22 21 25 25 C 1.46334 * 117.21668 * 185.53277 * 24 23 22 26 26 C 1.47814 * 134.45904 * 353.34702 * 9 7 2 27 27 H 0.96995 * 120.00322 * 0.02562 * 1 2 3 28 28 H 1.09002 * 113.76681 * 41.05606 * 10 9 7 29 29 H 1.08996 * 113.76853 * 269.66222 * 10 9 7 30 30 H 1.09003 * 113.73966 * 269.15643 * 11 10 9 31 31 H 0.97006 * 120.00294 * 336.92848 * 12 11 10 32 32 H 1.08999 * 110.90950 * 22.87874 * 17 15 13 33 33 H 1.09003 * 110.91054 * 259.27417 * 17 15 13 34 34 H 1.09000 * 109.83280 * 55.42420 * 20 18 17 35 35 H 1.08999 * 109.83215 * 294.53745 * 20 18 17 36 36 H 1.09003 * 109.25107 * 63.84433 * 21 20 18 37 37 H 1.09003 * 109.24799 * 183.26432 * 21 20 18 38 38 H 1.08995 * 109.23959 * 174.16883 * 22 21 20 39 39 H 1.09001 * 109.24086 * 293.60874 * 22 21 20 40 40 H 1.09007 * 109.78291 * 62.45560 * 23 22 21 41 41 H 1.08996 * 109.78722 * 183.22694 * 23 22 21 42 42 H 1.08992 * 110.15103 * 327.20385 * 25 24 23 43 43 H 1.08995 * 110.15026 * 88.95707 * 25 24 23 44 44 H 1.09000 * 113.76787 * 90.37858 * 26 9 7 45 45 H 1.08999 * 113.83617 * 318.91877 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5041 2.6200 0.8027 6 1 3.5963 1.4123 0.5920 7 6 2.0104 -1.2021 0.0005 8 1 3.0872 -1.2037 0.0831 9 7 1.3297 -2.3858 -0.1037 10 6 1.7289 -3.7985 -0.2550 11 6 0.3713 -4.1417 0.3844 12 7 -0.3171 -5.2634 -0.2591 13 6 -1.2384 -5.9704 0.4247 14 8 -1.4980 -5.6778 1.5727 15 6 -1.9461 -7.1247 -0.2372 16 1 -1.2231 -7.8635 -0.5830 17 6 -2.9549 -7.7760 0.7482 18 6 -4.1445 -8.0975 -0.1742 19 1 -3.9660 -9.0010 -0.7572 20 6 -5.4742 -8.1805 0.5650 21 6 -6.5789 -8.3782 -0.4842 22 6 -6.5471 -7.2525 -1.5174 23 6 -5.1460 -7.1227 -2.1343 24 7 -4.2005 -6.8968 -1.0513 25 6 -2.8124 -6.6189 -1.4217 26 6 -0.1000 -2.7610 -0.1072 27 1 -0.4850 0.8400 -0.0004 28 1 2.5863 -4.0806 0.3561 29 1 1.8200 -4.1205 -1.2924 30 1 0.4078 -4.2320 1.4701 31 1 -0.1097 -5.4973 -1.1775 32 1 -3.2464 -7.0724 1.5280 33 1 -2.5420 -8.6866 1.1823 34 1 -5.6490 -7.2567 1.1166 35 1 -5.4625 -9.0255 1.2534 36 1 -6.4290 -9.3330 -0.9883 37 1 -7.5493 -8.3830 0.0122 38 1 -7.2681 -7.4681 -2.3058 39 1 -6.8142 -6.3131 -1.0334 40 1 -4.8891 -8.0409 -2.6627 41 1 -5.1240 -6.2806 -2.8260 42 1 -2.5524 -7.1562 -2.3337 43 1 -2.6685 -5.5477 -1.5623 44 1 -0.5473 -2.7777 -1.1010 45 1 -0.7001 -2.2164 0.6217 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030308772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:40 Heat of formation + Delta-G solvation = -5.364510 kcal Electronic energy + Delta-G solvation = -23950.715104 eV Core-core repulsion = 20582.307793 eV Total energy + Delta-G solvation = -3368.407311 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.53341 -40.32685 -39.06149 -35.78464 -35.12847 -33.74213 -33.15773 -30.71604 -29.27552 -28.15234 -26.63457 -25.52846 -24.11514 -23.14566 -22.29670 -21.36007 -20.91087 -20.56032 -18.78278 -17.99698 -17.36648 -16.99484 -16.88883 -16.52996 -15.80420 -15.72813 -15.41894 -15.15680 -14.86070 -14.57293 -14.32676 -13.85437 -13.69811 -13.46925 -13.29042 -13.24350 -13.16447 -12.86971 -12.74791 -12.58602 -12.46343 -12.29702 -12.01933 -11.95003 -11.77973 -11.53013 -11.52059 -11.25046 -11.17369 -10.91191 -10.75559 -9.93481 -9.19386 -8.97995 -7.94563 -5.29493 1.44453 1.46947 1.56229 1.67231 2.18868 2.49717 2.99273 3.23025 3.38236 3.46229 3.60209 3.83894 3.90738 4.02342 4.07428 4.11388 4.26780 4.34869 4.38473 4.49507 4.53075 4.55574 4.56823 4.65857 4.74290 4.85334 4.85951 4.90176 4.94111 5.04669 5.05122 5.12724 5.19497 5.20852 5.25780 5.28942 5.38890 5.46437 5.53996 5.71447 5.87187 6.07441 6.35865 6.65779 6.86048 7.35026 7.56334 8.50171 9.22904 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.027139 B = 0.003078 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.480358 B = 9093.276213 C = 9584.602787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.983 3.017 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.263 1.263 7 C -0.237 4.237 8 H 0.091 0.909 9 N -0.640 5.640 10 C 0.124 3.876 11 C 0.120 3.880 12 N -0.703 5.703 13 C 0.518 3.482 14 O -0.586 6.586 15 C -0.108 4.108 16 H 0.138 0.862 17 C -0.102 4.102 18 C 0.073 3.927 19 H 0.074 0.926 20 C -0.108 4.108 21 C -0.115 4.115 22 C -0.115 4.115 23 C 0.061 3.939 24 N -0.561 5.561 25 C 0.064 3.936 26 C 0.156 3.844 27 H 0.248 0.752 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.415 0.585 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.025 0.975 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.302 -22.957 -6.101 25.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.810 3.190 4 H -0.212 1.212 5 H -0.224 1.224 6 H -0.187 1.187 7 C -0.365 4.365 8 H 0.109 0.891 9 N -0.367 5.367 10 C -0.002 4.002 11 C 0.013 3.987 12 N -0.354 5.354 13 C 0.306 3.694 14 O -0.465 6.465 15 C -0.130 4.130 16 H 0.156 0.844 17 C -0.140 4.140 18 C -0.035 4.035 19 H 0.092 0.908 20 C -0.146 4.146 21 C -0.153 4.153 22 C -0.153 4.153 23 C -0.067 4.067 24 N -0.287 5.287 25 C -0.064 4.064 26 C 0.029 3.971 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.252 0.748 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.043 0.957 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -9.614 -21.980 -5.058 24.518 hybrid contribution 0.608 0.968 -0.762 1.374 sum -9.006 -21.012 -5.820 23.590 Atomic orbital electron populations 1.70061 1.06766 1.25760 1.57687 1.25767 0.96544 1.01312 1.02614 0.85001 0.77896 0.78726 0.77361 1.21154 1.22355 1.18750 1.19446 0.91422 0.82973 1.42654 0.89107 1.46054 1.03294 1.02188 1.85151 1.23003 0.95045 0.83230 0.98890 1.23133 0.93134 0.84713 0.97694 1.45883 1.40560 1.31772 1.17179 1.21096 0.78626 0.83642 0.86011 1.90673 1.65151 1.70466 1.20258 1.22564 0.98343 0.95303 0.96751 0.84444 1.22337 0.93969 1.00735 0.96952 1.22636 0.95185 0.91729 0.93908 0.90825 1.21532 0.93461 1.01797 0.97801 1.21548 0.98730 0.98574 0.96431 1.21604 0.95710 0.99123 0.98871 1.21990 0.92278 1.00295 0.92141 1.62716 1.07825 1.36995 1.21174 1.22473 0.87144 1.00984 0.95785 1.22510 0.87224 0.90600 0.96729 0.94268 0.91685 0.91554 0.89277 0.74837 0.92009 0.88836 0.93118 0.90162 0.91089 0.91287 0.90062 0.93056 0.93507 0.91202 0.90686 0.91997 0.95718 0.95724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.99 11.51 21.65 0.25 -59.74 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 3 Si 0.98 46.54 29.56 68.60 2.03 48.57 16 4 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 7 C -0.24 -13.50 10.70 84.03 0.90 -12.60 16 8 H 0.09 4.86 7.83 -2.91 -0.02 4.84 16 9 N -0.64 -33.45 3.70 -716.65 -2.65 -36.11 16 10 C 0.12 4.76 8.69 86.49 0.75 5.51 16 11 C 0.12 4.73 4.40 46.75 0.21 4.93 16 12 N -0.70 -20.81 5.32 -447.38 -2.38 -23.19 16 13 C 0.52 16.02 6.95 87.66 0.61 16.63 16 14 O -0.59 -24.13 15.07 -3.04 -0.05 -24.18 16 15 C -0.11 -2.23 3.43 -9.97 -0.03 -2.26 16 16 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 17 C -0.10 -2.16 5.95 31.71 0.19 -1.97 16 18 C 0.07 1.29 2.64 44.65 0.12 1.41 16 19 H 0.07 1.04 8.05 -2.39 -0.02 1.02 16 20 C -0.11 -1.85 5.67 30.60 0.17 -1.67 16 21 C -0.12 -1.59 5.94 30.75 0.18 -1.41 16 22 C -0.12 -1.79 6.06 30.75 0.19 -1.61 16 23 C 0.06 1.03 5.85 86.77 0.51 1.53 16 24 N -0.56 -11.88 4.65 -864.71 -4.02 -15.90 16 25 C 0.06 1.29 6.50 87.17 0.57 1.86 16 26 C 0.16 7.87 7.24 86.44 0.63 8.50 16 27 H 0.25 15.17 8.31 -92.71 -0.77 14.39 16 28 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.07 2.20 8.11 -2.39 -0.02 2.18 16 30 H 0.09 3.93 7.51 -2.39 -0.02 3.91 16 31 H 0.41 9.19 8.71 -92.70 -0.81 8.38 16 32 H 0.06 1.81 6.88 -2.39 -0.02 1.79 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.05 0.65 8.04 -2.38 -0.02 0.63 16 41 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.08 1.08 8.04 -2.39 -0.02 1.06 16 43 H 0.06 1.54 7.69 -2.39 -0.02 1.53 16 44 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.02 1.45 7.37 -2.39 -0.02 1.43 16 Total: -1.00 -75.96 352.74 -1.22 -77.18 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.16 Total: 18.11 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 5.45 Total: 15.26 kcal Atomic # 7 Polarization: -126.13 SS G_CDS: -8.81 Total: -134.94 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.05 Total: -24.18 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -75.96 -1.22 -77.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030308772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.813 kcal (2) G-P(sol) polarization free energy of solvation -75.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds